16-9934622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934622
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934622
    reference: chr 16
allele count: 7
allele frequency: 5.781779136037003e-5
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1533G>A
  hgvsp: ENST00000396575.2:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1533G>A
  hgvsp: ENST00000396573.2:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1533G>A
  hgvsp: ENST00000562109.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1533G>A
  hgvsp: ENST00000404927.2:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1062G>A
  hgvsp: ENST00000535259.1:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1533G>A
  hgvsp: ENST00000330684.3:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser511Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-9934639-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934639
    reference: chr 16
allele count: 3
allele frequency: 2.478970070568015e-5
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1045G>C
  hgvsp: ENSP00000441572.1:p.Val349Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1516G>C
  hgvsp: ENSP00000379820.2:p.Val506Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1516G>C
  hgvsp: ENSP00000379818.2:p.Val506Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1516G>C
  hgvsp: ENSP00000454998.1:p.Val506Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1516G>C
  hgvsp: ENSP00000332549.3:p.Val506Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1516G>C
  hgvsp: ENSP00000385872.2:p.Val506Leu
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val506Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

16-9934664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934664
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934664
    reference: chr 16
allele count: 3
allele frequency: 2.549286199864038e-5
allele num: 117680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-7C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-7C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-7C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-7C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-7C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-7C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13889
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7941
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1498-7C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-9934668-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934668
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934668
    reference: chr 16
allele count: 1
allele frequency: 9.614275275929701e-6
allele num: 104012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-11C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-11C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-11C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-11C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-11C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-11C>A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-9934670-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934671
    reference: chr 16
allele count: 187
allele frequency: 5.241031390134529e-3
allele num: 35680
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-14dupT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-14dupT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-14dupT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-14dupT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-14dupT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-14dupT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 1.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 31655
  bin: 2.5e0
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 3.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 10
num of homozygotes: 9
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-9934670-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934672
    reference: chr 16
allele count: 47
allele frequency: 1.317264573991031e-3
allele num: 35680
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-15_1498-14dupTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-15_1498-14dupTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-15_1498-14dupTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-15_1498-14dupTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-15_1027-14dupTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-15_1498-14dupTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 7
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/16-9934670-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934669
    reference: chr 16
allele count: 781
allele frequency: 2.18890134529148e-2
allele num: 35680
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-14delT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-14delT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-14delT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-14delT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-14delT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-14delT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 1.75e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 502
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 31655
  bin: 2.5e0
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 2.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 6.75e1
  variant carriers: 60
num of homozygotes: 1
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: CA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-9934670-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934668
    reference: chr 16
allele count: 1444
allele frequency: 4.047085201793722e-2
allele num: 35680
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 649
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 1.75e1
  variant carriers: 554
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 3.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 2.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 521
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 31655
  bin: 2.5e0
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 6.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 6.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 73
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 38
  allele frequency: 1.321279554937413e-2
  allele num: 2876
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 63
  allele frequency: 3.264248704663213e-2
  allele num: 1930
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 14
  allele frequency: 4.895104895104895e-2
  allele num: 286
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1150
  allele frequency: 5.455925609640384e-2
  allele num: 21078
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
reference allele: CAA
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/16-9934670-CAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934667
    reference: chr 16
allele count: 844
allele frequency: 2.365470852017937e-2
allele num: 35680
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 1.75e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 6.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 2.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 422
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 31655
  bin: 2.5e0
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 3.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 6.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 29
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 671
  allele frequency: 3.183413986146693e-2
  allele num: 21078
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 27
  allele frequency: 1.398963730569948e-2
  allele num: 1930
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 77
  allele frequency: 3.778213935230618e-2
  allele num: 2038
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 27
  allele frequency: 9.388038942976356e-3
  allele num: 2876
  num of homozygotes: 0
population: African
population: South Asian
population: Other
reference allele: CAAA
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-9934670-CAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934666
    reference: chr 16
allele count: 211
allele frequency: 5.913677130044843e-3
allele num: 35680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-17_1498-14delTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-17_1498-14delTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-17_1498-14delTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-17_1498-14delTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-17_1027-14delTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-17_1498-14delTTTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 1.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 9
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: CAAAA
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

16-9934679-AAAAAAAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934679
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934667
    reference: chr 16
allele count: 1
allele frequency: 9.264749481174029e-6
allele num: 107936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: AAAAAAAAAAAAG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-9934682-AAAAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934682
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934673
    reference: chr 16
allele count: 12
allele frequency: 1.105196264436626e-4
allele num: 108578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 15861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: AAAAAAAAAG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-9934683-AAAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934683
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934675
    reference: chr 16
allele count: 7
allele frequency: 6.428978159842766e-5
allele num: 108882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16075
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: AAAAAAAAG
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

16-9934684-AAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934684
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934677
    reference: chr 16
allele count: 10
allele frequency: 9.275577404693442e-5
allele num: 107810
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-28delCTTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-28delCTTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-28delCTTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-28delCTTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-28delCTTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-28delCTTTTTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15102
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: AAAAAAAG
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

16-9934685-AAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934685
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934679
    reference: chr 16
allele count: 64
allele frequency: 5.95459620394492e-4
allele num: 107480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-29delCTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-29delCTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-29delCTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-29delCTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-29delCTTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-29delCTTTTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16238
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 14778
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 2.75e1
  variant carriers: 6
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: AAAAAAG
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

16-9934686-AAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934686
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934681
    reference: chr 16
allele count: 285
allele frequency: 2.695290334783431e-3
allele num: 105740
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-30delCTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-30delCTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-30delCTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-30delCTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-30delCTTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-30delCTTTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 2.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 2.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 1.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 15522
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 13796
  bin: 2.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 2.75e1
  variant carriers: 30
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: AAAAAG
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-9934687-AAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934683
    reference: chr 16
allele count: 410
allele frequency: 3.994933255383416e-3
allele num: 102630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-31delCTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-31delCTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-31delCTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-31delCTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-31delCTTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-31delCTTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 2.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 2.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 2.5e0
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 2.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 7.5e0
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 3.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 9.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 12738
  bin: 2.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.75e1
  variant carriers: 49
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: AAAAG
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

16-9934688-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934688
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934685
    reference: chr 16
allele count: 144
allele frequency: 1.455751228290099e-3
allele num: 98918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-32delCTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-32delCTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-32delCTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-32delCTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-32delCTT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-32delCTT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 1.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 2.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 2.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 11463
  bin: 2.25e1
  variant carriers: 45
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AAAG
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

16-9934689-A-AAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934691
    reference: chr 16
allele count: 527
allele frequency: 4.870880085771854e-3
allele num: 108194
alternate allele: AAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-33dupCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-33dupCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-33dupCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-33dupCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-33dupCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-33dupCT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 1.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 3.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10797
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 4
num of homozygotes: 12
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-9934689-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934687
    reference: chr 16
allele count: 26728
allele frequency: 2.470377285246871e-1
allele num: 108194
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34_1498-33delCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34_1498-33delCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34_1498-33delCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34_1027-33delCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34_1498-33delCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34_1498-33delCT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 5239
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 2438
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 1333
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 768
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 1.75e1
  variant carriers: 4453
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 3.25e1
  variant carriers: 2510
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 623
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.75e1
  variant carriers: 4105
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 287
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 3.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 1.25e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 431
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 21328
  bin: 9.75e1
  variant carriers: 18650
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 1.75e1
  variant carriers: 203
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 217
genotype quality: GenotypeQuality
  all individuals: 10797
  bin: 6.25e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 8.25e1
  variant carriers: 348
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.25e1
  variant carriers: 284
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 278
num of homozygotes: 3852
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: AAG
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

16-9934689-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
allele count: 33
allele frequency: 3.050076714050687e-4
allele num: 108194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-32T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-32T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-32T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-32T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-32T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-32T>C
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

16-9934689-AAGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934685
    reference: chr 16
allele count: 52
allele frequency: 4.806181488807143e-4
allele num: 108194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-36_1498-33delCTCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-36_1027-33delCTCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-36_1498-33delCTCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-36_1498-33delCTCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-36_1498-33delCTCT
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-36_1498-33delCTCT
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AAGAG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-9934689-AAGAGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934683
    reference: chr 16
allele count: 6
allele frequency: 5.545594025546703e-5
allele num: 108194
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21328
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10797
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 58052
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 818
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10634
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7616
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
reference allele: AAGAGAG
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

16-9934690-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934689
    reference: chr 16
allele count: 21
allele frequency: 3.973058876948691e-4
allele num: 52856
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34delC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34delC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34delC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34delC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34delC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34delC
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4814
  bin: 2.5e0
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 5.25e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: AG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

16-9934691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934691
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934691
    reference: chr 16
allele count: 9
allele frequency: 2.002224694104561e-4
allele num: 44950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-34C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7594
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-9934693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934693
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934693
    reference: chr 16
allele count: 2
allele frequency: 1.69842725636061e-5
allele num: 117756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-36C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-36C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-36C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-36C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-36C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-36C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

16-9934702-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934702
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934702
    reference: chr 16
allele count: 1
allele frequency: 8.369181326682624e-6
allele num: 119486
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-45T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-45T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-45T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-45T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-45T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-45T>C
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7343
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

16-9934709-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934709
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934709
    reference: chr 16
allele count: 1
allele frequency: 8.332361224523806e-6
allele num: 120014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1498-52C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1027-52C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1498-52C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1498-52C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1498-52C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1498-52C>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-9934747-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934747
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934747
    reference: chr 16
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+46C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+46C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+46C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+46C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+46C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+46C>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

16-9934748-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934748
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934748
    reference: chr 16
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+45C>A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

16-9934750-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934750
    reference: chr 16
allele count: 11
allele frequency: 9.071117561683599e-5
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+43G>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+43G>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+43G>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+43G>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+43G>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+43G>C
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14126
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-9934753-TTGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934753
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934749
    reference: chr 16
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+36_1497+39delGACA
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+36_1026+39delGACA
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+36_1497+39delGACA
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+36_1497+39delGACA
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+36_1497+39delGACA
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+36_1497+39delGACA
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14116
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: TTGTC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-9934756-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934756
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934756
    reference: chr 16
allele count: 3
allele frequency: 2.474104374216534e-5
allele num: 121256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+37A>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+37A>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+37A>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+37A>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+37A>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+37A>C
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14115
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

16-9934759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934759
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934759
    reference: chr 16
allele count: 23
allele frequency: 1.897063675354668e-4
allele num: 121240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+34C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+34C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

16-9934762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934762
    reference: chr 16
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+31A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+31A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+31A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+31A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+31A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+31A>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

16-9934771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934771
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934771
    reference: chr 16
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+22T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+22T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+22T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+22T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+22T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+22T>C
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS

16-9934783-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934783
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934783
    reference: chr 16
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1497+10C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1497+10C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1497+10C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1497+10C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1497+10C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1026+10C>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8304
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

16-9934796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934796
    reference: chr 16
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1023T>C
  hgvsp: ENST00000535259.1:c.1023T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1494T>C
  hgvsp: ENST00000396575.2:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1494T>C
  hgvsp: ENST00000404927.2:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1494T>C
  hgvsp: ENST00000562109.1:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1494T>C
  hgvsp: ENST00000330684.3:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1494T>C
  hgvsp: ENST00000396573.2:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly498Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-9934797-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934797
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934797
    reference: chr 16
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1493G>C
  hgvsp: ENSP00000332549.3:p.Gly498Ala
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1493G>C
  hgvsp: ENSP00000385872.2:p.Gly498Ala
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1493G>C
  hgvsp: ENSP00000379820.2:p.Gly498Ala
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1022G>C
  hgvsp: ENSP00000441572.1:p.Gly341Ala
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1493G>C
  hgvsp: ENSP00000379818.2:p.Gly498Ala
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1493G>C
  hgvsp: ENSP00000454998.1:p.Gly498Ala
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14079
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly498Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/16-9934798-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934798
    reference: chr 16
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.1021G>T
  hgvsp: ENSP00000441572.1:p.Gly341Cys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1492G>T
  hgvsp: ENSP00000332549.3:p.Gly498Cys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1492G>T
  hgvsp: ENSP00000379820.2:p.Gly498Cys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1492G>T
  hgvsp: ENSP00000385872.2:p.Gly498Cys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1492G>T
  hgvsp: ENSP00000454998.1:p.Gly498Cys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1492G>T
  hgvsp: ENSP00000379818.2:p.Gly498Cys
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14080
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly498Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-9934832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934832
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934832
    reference: chr 16
allele count: 10
allele frequency: 8.243071698237631e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1458C>A
  hgvsp: ENST00000396573.2:c.1458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.987C>A
  hgvsp: ENST00000535259.1:c.987C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1458C>A
  hgvsp: ENST00000396575.2:c.1458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1458C>A
  hgvsp: ENST00000562109.1:c.1458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1458C>A
  hgvsp: ENST00000330684.3:c.1458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1458C>A
  hgvsp: ENST00000404927.2:c.1458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly486Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-9934835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934835
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934835
    reference: chr 16
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1455T>C
  hgvsp: ENST00000330684.3:c.1455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1455T>C
  hgvsp: ENST00000396575.2:c.1455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1455T>C
  hgvsp: ENST00000404927.2:c.1455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1455T>C
  hgvsp: ENST00000396573.2:c.1455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.984T>C
  hgvsp: ENST00000535259.1:c.984T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1455T>C
  hgvsp: ENST00000562109.1:c.1455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His485His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

16-9934844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934844
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934844
    reference: chr 16
allele count: 3
allele frequency: 2.472880741204788e-5
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1446T>C
  hgvsp: ENST00000562109.1:c.1446T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1446T>C
  hgvsp: ENST00000396573.2:c.1446T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1446T>C
  hgvsp: ENST00000404927.2:c.1446T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1446T>C
  hgvsp: ENST00000330684.3:c.1446T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1446T>C
  hgvsp: ENST00000396575.2:c.1446T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.975T>C
  hgvsp: ENST00000535259.1:c.975T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14067
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn482Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-9934845-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934845
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934845
    reference: chr 16
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1445A>G
  hgvsp: ENSP00000385872.2:p.Asn482Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1445A>G
  hgvsp: ENSP00000379818.2:p.Asn482Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.974A>G
  hgvsp: ENSP00000441572.1:p.Asn325Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1445A>G
  hgvsp: ENSP00000379820.2:p.Asn482Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1445A>G
  hgvsp: ENSP00000454998.1:p.Asn482Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1445A>G
  hgvsp: ENSP00000332549.3:p.Asn482Ser
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn482Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-9934848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934848
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934848
    reference: chr 16
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1442C>T
  hgvsp: ENSP00000454998.1:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1442C>T
  hgvsp: ENSP00000332549.3:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1442C>T
  hgvsp: ENSP00000385872.2:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1442C>T
  hgvsp: ENSP00000379818.2:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.971C>T
  hgvsp: ENSP00000441572.1:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1442C>T
  hgvsp: ENSP00000379820.2:p.Thr481Ile
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14065
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr481Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

16-9934853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934853
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934853
    reference: chr 16
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1437G>C
  hgvsp: ENST00000396573.2:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1437G>C
  hgvsp: ENST00000396575.2:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1437G>C
  hgvsp: ENST00000562109.1:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1437G>C
  hgvsp: ENST00000330684.3:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1437G>C
  hgvsp: ENST00000404927.2:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.966G>C
  hgvsp: ENST00000535259.1:c.966G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu479Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

16-9934859-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934859
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934859
    reference: chr 16
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.960C>G
  hgvsp: ENST00000535259.1:c.960C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1431C>G
  hgvsp: ENST00000404927.2:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1431C>G
  hgvsp: ENST00000562109.1:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1431C>G
  hgvsp: ENST00000396573.2:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1431C>G
  hgvsp: ENST00000330684.3:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1431C>G
  hgvsp: ENST00000396575.2:c.1431C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu477Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-9934862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934862
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934862
    reference: chr 16
allele count: 3
allele frequency: 2.472921509471289e-5
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1428C>T
  hgvsp: ENST00000562109.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1428C>T
  hgvsp: ENST00000396573.2:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1428C>T
  hgvsp: ENST00000404927.2:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1428C>T
  hgvsp: ENST00000330684.3:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.957C>T
  hgvsp: ENST00000535259.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1428C>T
  hgvsp: ENST00000396575.2:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp476Asp
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-9934864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934864
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934864
    reference: chr 16
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1426G>A
  hgvsp: ENSP00000379818.2:p.Asp476Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1426G>A
  hgvsp: ENSP00000385872.2:p.Asp476Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1426G>A
  hgvsp: ENSP00000454998.1:p.Asp476Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.955G>A
  hgvsp: ENSP00000441572.1:p.Asp319Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1426G>A
  hgvsp: ENSP00000379820.2:p.Asp476Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1426G>A
  hgvsp: ENSP00000332549.3:p.Asp476Asn
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp476Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

16-9934865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934865
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934865
    reference: chr 16
allele count: 4
allele frequency: 3.297283038776049e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1425C>T
  hgvsp: ENST00000330684.3:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1425C>T
  hgvsp: ENST00000396575.2:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1425C>T
  hgvsp: ENST00000562109.1:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1425C>T
  hgvsp: ENST00000396573.2:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.954C>T
  hgvsp: ENST00000535259.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1425C>T
  hgvsp: ENST00000404927.2:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr475Tyr
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

16-9934879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934879
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934879
    reference: chr 16
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1411G>A
  hgvsp: ENSP00000379820.2:p.Val471Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1411G>A
  hgvsp: ENSP00000379818.2:p.Val471Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1411G>A
  hgvsp: ENSP00000454998.1:p.Val471Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.940G>A
  hgvsp: ENSP00000441572.1:p.Val314Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1411G>A
  hgvsp: ENSP00000385872.2:p.Val471Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1411G>A
  hgvsp: ENSP00000332549.3:p.Val471Met
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val471Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-9934880-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934880
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934880
    reference: chr 16
allele count: 12
allele frequency: 9.891686037885158e-5
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1410T>G
  hgvsp: ENST00000404927.2:c.1410T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1410T>G
  hgvsp: ENST00000330684.3:c.1410T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1410T>G
  hgvsp: ENST00000562109.1:c.1410T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1410T>G
  hgvsp: ENST00000396573.2:c.1410T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.939T>G
  hgvsp: ENST00000535259.1:c.939T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1410T>G
  hgvsp: ENST00000396575.2:c.1410T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr470Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-9934881-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934881
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934881
    reference: chr 16
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1409C>A
  hgvsp: ENSP00000332549.3:p.Thr470Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1409C>A
  hgvsp: ENSP00000379820.2:p.Thr470Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.938C>A
  hgvsp: ENSP00000441572.1:p.Thr313Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1409C>A
  hgvsp: ENSP00000385872.2:p.Thr470Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1409C>A
  hgvsp: ENSP00000379818.2:p.Thr470Asn
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1409C>A
  hgvsp: ENSP00000454998.1:p.Thr470Asn
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14048
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr470Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/16-9934902-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934902
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934902
    reference: chr 16
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.917T>G
  hgvsp: ENSP00000441572.1:p.Ile306Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1388T>G
  hgvsp: ENSP00000454998.1:p.Ile463Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1388T>G
  hgvsp: ENSP00000332549.3:p.Ile463Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1388T>G
  hgvsp: ENSP00000379820.2:p.Ile463Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1388T>G
  hgvsp: ENSP00000385872.2:p.Ile463Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1388T>G
  hgvsp: ENSP00000379818.2:p.Ile463Ser
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14045
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile463Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-9934904-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934904
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934904
    reference: chr 16
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.915T>A
  hgvsp: ENSP00000441572.1:p.Asp305Glu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1386T>A
  hgvsp: ENSP00000379820.2:p.Asp462Glu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1386T>A
  hgvsp: ENSP00000385872.2:p.Asp462Glu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1386T>A
  hgvsp: ENSP00000454998.1:p.Asp462Glu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1386T>A
  hgvsp: ENSP00000379818.2:p.Asp462Glu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1386T>A
  hgvsp: ENSP00000332549.3:p.Asp462Glu
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14044
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp462Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-9934913-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934913
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934913
    reference: chr 16
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1377C>G
  hgvsp: ENSP00000379818.2:p.Phe459Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1377C>G
  hgvsp: ENSP00000385872.2:p.Phe459Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1377C>G
  hgvsp: ENSP00000332549.3:p.Phe459Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.906C>G
  hgvsp: ENSP00000441572.1:p.Phe302Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1377C>G
  hgvsp: ENSP00000379820.2:p.Phe459Leu
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1377C>G
  hgvsp: ENSP00000454998.1:p.Phe459Leu
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe459Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-9934916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934916
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934916
    reference: chr 16
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.903G>A
  hgvsp: ENST00000535259.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1374G>A
  hgvsp: ENST00000396575.2:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1374G>A
  hgvsp: ENST00000562109.1:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1374G>A
  hgvsp: ENST00000404927.2:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1374G>A
  hgvsp: ENST00000396573.2:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1374G>A
  hgvsp: ENST00000330684.3:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly458Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

16-9934936-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934936
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934936
    reference: chr 16
allele count: 36
allele frequency: 2.974862412613417e-4
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.883G>A
  hgvsp: ENSP00000441572.1:p.Val295Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1354G>A
  hgvsp: ENSP00000454998.1:p.Val452Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1354G>A
  hgvsp: ENSP00000332549.3:p.Val452Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1354G>A
  hgvsp: ENSP00000385872.2:p.Val452Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1354G>A
  hgvsp: ENSP00000379820.2:p.Val452Met
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1354G>A
  hgvsp: ENSP00000379818.2:p.Val452Met
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 14466
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14046
  bin: 9.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 23558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val452Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

16-9934938-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934938
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934938
    reference: chr 16
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1352A>G
  hgvsp: ENSP00000379818.2:p.Asn451Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.881A>G
  hgvsp: ENSP00000441572.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1352A>G
  hgvsp: ENSP00000385872.2:p.Asn451Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1352A>G
  hgvsp: ENSP00000379820.2:p.Asn451Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1352A>G
  hgvsp: ENSP00000332549.3:p.Asn451Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1352A>G
  hgvsp: ENSP00000454998.1:p.Asn451Ser
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn451Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-9934946-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934946
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934946
    reference: chr 16
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1344G>C
  hgvsp: ENSP00000332549.3:p.Glu448Asp
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.873G>C
  hgvsp: ENSP00000441572.1:p.Glu291Asp
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1344G>C
  hgvsp: ENSP00000379818.2:p.Glu448Asp
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1344G>C
  hgvsp: ENSP00000454998.1:p.Glu448Asp
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1344G>C
  hgvsp: ENSP00000385872.2:p.Glu448Asp
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1344G>C
  hgvsp: ENSP00000379820.2:p.Glu448Asp
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu448Asp
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

16-9934949-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934949
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934949
    reference: chr 16
allele count: 5
allele frequency: 4.143257263129983e-5
allele num: 120678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1341T>A
  hgvsp: ENSP00000454998.1:p.Asn447Lys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1341T>A
  hgvsp: ENSP00000379818.2:p.Asn447Lys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.870T>A
  hgvsp: ENSP00000441572.1:p.Asn290Lys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1341T>A
  hgvsp: ENSP00000385872.2:p.Asn447Lys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1341T>A
  hgvsp: ENSP00000379820.2:p.Asn447Lys
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1341T>A
  hgvsp: ENSP00000332549.3:p.Asn447Lys
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14007
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn447Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

16-9934959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934959
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934959
    reference: chr 16
allele count: 2
allele frequency: 1.659916340216453e-5
allele num: 120488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.860A>G
  hgvsp: ENSP00000441572.1:p.Asn287Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1331A>G
  hgvsp: ENSP00000379818.2:p.Asn444Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1331A>G
  hgvsp: ENSP00000332549.3:p.Asn444Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1331A>G
  hgvsp: ENSP00000379820.2:p.Asn444Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1331A>G
  hgvsp: ENSP00000385872.2:p.Asn444Ser
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1331A>G
  hgvsp: ENSP00000454998.1:p.Asn444Ser
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13999
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn444Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

16-9934969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934969
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934969
    reference: chr 16
allele count: 683
allele frequency: 5.682290886703606e-3
allele num: 120198
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-8C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-8C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-8C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-8C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-8C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  clinical significance: benign&likely_benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-8C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 14081
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 19276
  bin: 2.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14155
  bin: 9.75e1
  variant carriers: 656
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 1
hgvs: c.1329-8C>T
num of homozygotes: 19
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-9934970-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934970
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934970
    reference: chr 16
allele count: 39
allele frequency: 3.245726460160788e-4
allele num: 120158
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-9T>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-9T>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-9T>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-9T>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-9T>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-9T>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 19373
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13624
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ

16-9934977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9934977
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9934977
    reference: chr 16
allele count: 1
allele frequency: 8.3380582329987e-6
allele num: 119932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-16G>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-16G>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-16G>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-16G>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-16G>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-16G>A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

16-9935005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9935005
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9935005
    reference: chr 16
allele count: 1
allele frequency: 8.424741781664392e-6
allele num: 118698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-44C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-44C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-44C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-44C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-44C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-44C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13550
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

16-9935006-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9935006
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9935006
    reference: chr 16
allele count: 3
allele frequency: 2.527124469303861e-5
allele num: 118712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-45C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-45C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-45C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-45C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-45C>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-45C>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

16-9935006-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9935006
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9935006
    reference: chr 16
allele count: 1
allele frequency: 8.423748231012871e-6
allele num: 118712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-45C>A
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-45C>A
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13548
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-9935008-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9935008
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9935008
    reference: chr 16
allele count: 1
allele frequency: 8.427581789681268e-6
allele num: 118658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-47A>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-47A>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-47A>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-47A>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-47A>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-47A>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10909
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-9935008-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9935008
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9935008
    reference: chr 16
allele count: 1
allele frequency: 8.427581789681268e-6
allele num: 118658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1329-47A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1329-47A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.858-47A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1329-47A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1329-47A>G
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1329-47A>G
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13545
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-9943565-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9943565
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9943565
    reference: chr 16
allele count: 50
allele frequency: 4.124119500486646e-4
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1328+48T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1328+48T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1328+48T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1328+48T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.857+48T>C
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1328+48T>C
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23413
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6299
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

16-9943573-G-GGGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9943573
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9943577
    reference: chr 16
allele count: 3
allele frequency: 2.474308430793593e-5
allele num: 121246
alternate allele: GGGTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.857+36_857+39dupAACC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1328+36_1328+39dupAACC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1328+36_1328+39dupAACC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1328+36_1328+39dupAACC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1328+36_1328+39dupAACC
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1328+36_1328+39dupAACC
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23393
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

16-9943578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9943578
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 9943578
    reference: chr 16
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000332549
  ensembl transcript: ENST00000330684
  gene symbol: GRIN2A
  hgvsc: ENST00000330684.3:c.1328+35C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379818
  ensembl transcript: ENST00000396573
  gene symbol: GRIN2A
  hgvsc: ENST00000396573.2:c.1328+35C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000441572
  ensembl transcript: ENST00000535259
  gene symbol: GRIN2A
  hgvsc: ENST00000535259.1:c.857+35C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000454998
  ensembl transcript: ENST00000562109
  gene symbol: GRIN2A
  hgvsc: ENST00000562109.1:c.1328+35C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000379820
  ensembl transcript: ENST00000396575
  gene symbol: GRIN2A
  hgvsc: ENST00000396575.2:c.1328+35C>T
  variant of: http://identifiers.org/hgnc/4585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183454
  ensembl protein: ENSP00000385872
  ensembl transcript: ENST00000404927
  gene symbol: GRIN2A
  hgvsc: ENST00000404927.2:c.1328+35C>T
  variant of: http://identifiers.org/hgnc/4585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23399
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6090
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001110410852015e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.93012931866435e-4
allele num: 10362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 2.625e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 2.594409e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6076
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.029385034837928e-4
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.373e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 2.591801e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.045e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 9559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5782
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.632203075782842e-5
allele num: 64764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.414346e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
all individuals: 2591
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.624271330153684e-5
allele num: 15096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

QD
type: SiteQuality
SIO_000300: 1.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.605e0

VQSLOD
type: SiteQuality
SIO_000300: -1.842e0

MQ
type: SiteQuality
SIO_000300: 5.696e1

FS
type: SiteQuality
SIO_000300: 1.527e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.275e0

DP
type: SiteQuality
SIO_000300: 2.328547e6

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 587
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4342
bin: 2.25e1
variant carriers: 48

GenotypeQuality
all individuals: 456
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2186
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 4

East Asian
type: Population
allele count: 16
allele frequency: 8.290155440414507e-3
allele num: 1930
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 3.591160220994475e-3
allele num: 3620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 2.453385672227674e-3
allele num: 2038
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 1.748251748251748e-2
allele num: 286
num of homozygotes: 1

Latino
type: Population
allele count: 9
allele frequency: 3.129346314325452e-3
allele num: 2876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 113
allele frequency: 5.361039946864029e-3
allele num: 21078
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 6.749740394600207e-3
allele num: 3852
num of homozygotes: 8

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.068e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

QD
type: SiteQuality
SIO_000300: 2.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 5.741e0

DP
type: SiteQuality
SIO_000300: 2.096105e6

MQ
type: SiteQuality
SIO_000300: 5.642e1

GenotypeQuality
all individuals: 2158
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 31655
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 1830
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 977
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 456
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2186
bin: 9.75e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.472031403336605e-3
allele num: 2038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 1.233513616092608e-3
allele num: 21078
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.036269430051813e-3
allele num: 1930
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.043115438108484e-3
allele num: 2876
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.104972375690608e-3
allele num: 3620
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 2.336448598130841e-3
allele num: 3852
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

DP
type: SiteQuality
SIO_000300: 2.096105e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.068e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

FS
type: SiteQuality
SIO_000300: 5.741e0

MQ
type: SiteQuality
SIO_000300: 5.642e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
all individuals: 346
bin: 8.25e1
variant carriers: 23

GenotypeQuality
all individuals: 977
bin: 4.25e1
variant carriers: 82

GenotypeQuality
all individuals: 1830
bin: 3.75e1
variant carriers: 96

GenotypeQuality
all individuals: 4750
bin: 7.5e0
variant carriers: 113

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 20

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 374
bin: 7.25e1
variant carriers: 33

South Asian
type: Population
allele count: 7
allele frequency: 1.81723779854621e-3
allele num: 3852
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 3.496503496503497e-2
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 621
allele frequency: 2.946199829205807e-2
allele num: 21078
num of homozygotes: 1

African
type: Population
allele count: 23
allele frequency: 6.353591160220995e-3
allele num: 3620
num of homozygotes: 0

East Asian
type: Population
allele count: 42
allele frequency: 2.176165803108808e-2
allele num: 1930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 61
allele frequency: 2.993130520117762e-2
allele num: 2038
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 5.910987482614743e-3
allele num: 2876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.068e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 2.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

FS
type: SiteQuality
SIO_000300: 5.741e0

DP
type: SiteQuality
SIO_000300: 2.096105e6

MQ
type: SiteQuality
SIO_000300: 5.642e1

South Asian
type: Population
allele count: 22
allele frequency: 5.711318795430945e-3
allele num: 3852
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 7.458563535911602e-3
allele num: 3620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 130
allele frequency: 6.378802747791953e-2
allele num: 2038
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 5.741e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.068e-1

MQ
type: SiteQuality
SIO_000300: 5.642e1

DP
type: SiteQuality
SIO_000300: 2.096105e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

African
type: Population
allele count: 12
allele frequency: 3.314917127071823e-3
allele num: 3620
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 6.230529595015576e-3
allele num: 3852
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 2.097902097902098e-2
allele num: 286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

DP
type: SiteQuality
SIO_000300: 2.096105e6

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.068e-1

MQ
type: SiteQuality
SIO_000300: 5.642e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

FS
type: SiteQuality
SIO_000300: 5.741e0

QD
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

GenotypeQuality
all individuals: 31655
bin: 2.5e0
variant carriers: 73

GenotypeQuality
all individuals: 963
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1830
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 456
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2266
bin: 1.25e1
variant carriers: 25

GenotypeQuality
all individuals: 714
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 346
bin: 8.25e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 160
allele frequency: 7.590853022108359e-3
allele num: 21078
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 5.699481865284974e-3
allele num: 1930
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 6.993006993006993e-3
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 8.287292817679558e-4
allele num: 3620
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 4.153686396677051e-3
allele num: 3852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 6.869479882237487e-3
allele num: 2038
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.738525730180807e-3
allele num: 2876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

MQ
type: SiteQuality
SIO_000300: 5.642e1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

DP
type: SiteQuality
SIO_000300: 2.096105e6

FS
type: SiteQuality
SIO_000300: 5.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.068e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 2.65e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13290
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.306760847628658e-5
allele num: 15856
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.922e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.425e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 2.543367e6

MQRankSum
type: SiteQuality
SIO_000300: -2.226e0

MQ
type: SiteQuality
SIO_000300: 5.548e1

QD
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e0

GenotypeQuality
all individuals: 445
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3689
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15115
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4475
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.556675062972292e-4
allele num: 15880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.282e0

VQSLOD
type: SiteQuality
SIO_000300: -1.776e0

DP
type: SiteQuality
SIO_000300: 2.550684e6

QD
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.041e0

MQ
type: SiteQuality
SIO_000300: 5.642e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

GenotypeQuality
all individuals: 2555
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.325556733828208e-4
allele num: 7544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.012866356982923e-5
allele num: 59846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.815315315315315e-4
allele num: 10656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 7.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

DP
type: SiteQuality
SIO_000300: 2.552206e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.812e1

GenotypeQuality
all individuals: 2559
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 753
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1326
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1625
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.631321370309951e-4
allele num: 6130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.077194889915738e-4
allele num: 7358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.013718997094006e-4
allele num: 59188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.713e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

VQSLOD
type: SiteQuality
SIO_000300: -1.583e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.736e0

DP
type: SiteQuality
SIO_000300: 2.552978e6

GenotypeQuality
all individuals: 3250
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 603
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2616
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4542
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1633
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 716
bin: 5.25e1
variant carriers: 6

African
type: Population
allele count: 6
allele frequency: 8.198961464881115e-4
allele num: 7318
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.976917854718263e-4
allele num: 58920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10524
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.265182186234818e-4
allele num: 15808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.14603798297315e-3
allele num: 6108
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.199040767386091e-3
allele num: 834
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.87e-1

DP
type: SiteQuality
SIO_000300: 2.551667e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

QD
type: SiteQuality
SIO_000300: 2.4e-1

MQ
type: SiteQuality
SIO_000300: 5.825e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.636e0

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1380
bin: 2.5e0
variant carriers: 28

GenotypeQuality
all individuals: 562
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4536
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1171
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1188
bin: 3.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1022
bin: 5.25e1
variant carriers: 13

South Asian
type: Population
allele count: 5
allele frequency: 3.201024327784891e-4
allele num: 15620
num of homozygotes: 0

African
type: Population
allele count: 49
allele frequency: 6.887826820354231e-3
allele num: 7114
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.523977788995457e-4
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.309066843150232e-3
allele num: 6044
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.774783445620789e-4
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 3.475704651564932e-3
allele num: 57830
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.444987775061125e-3
allele num: 818
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.791e1

VQSLOD
type: SiteQuality
SIO_000300: -1.616e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.619e0

FS
type: SiteQuality
SIO_000300: 7.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.713e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 2.535189e6

GenotypeQuality
all individuals: 15980
bin: 6.25e1
variant carriers: 22

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 37

GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 738
bin: 1.25e1
variant carriers: 46

GenotypeQuality
all individuals: 938
bin: 5.25e1
variant carriers: 29

GenotypeQuality
all individuals: 481
bin: 5.75e1
variant carriers: 17

European (Non-Finnish)
type: Population
allele count: 294
allele frequency: 5.282259513457185e-3
allele num: 55658
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.771929824561403e-3
allele num: 798
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.551020408163266e-4
allele num: 7840
num of homozygotes: 0

African
type: Population
allele count: 57
allele frequency: 8.424475317765297e-3
allele num: 6766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 43
allele frequency: 7.483466759484859e-3
allele num: 5746
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.826374053214216e-4
allele num: 10298
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.495231e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

MQ
type: SiteQuality
SIO_000300: 5.779e1

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

FS
type: SiteQuality
SIO_000300: 3.222e0

MQRankSum
type: SiteQuality
SIO_000300: -1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

GenotypeQuality
all individuals: 2213
bin: 7.5e0
variant carriers: 44

GenotypeQuality
all individuals: 1642
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 714
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 15606
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 738
bin: 9.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 2.920774005111355e-3
allele num: 5478
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.980982567353407e-4
allele num: 10096
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 3.310214375788146e-3
allele num: 6344
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.326259946949602e-3
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.615062761506276e-4
allele num: 15296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 100
allele frequency: 1.881679963871745e-3
allele num: 53144
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 2.957e0

QD
type: SiteQuality
SIO_000300: 5.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 2.444881e6

VQSLOD
type: SiteQuality
SIO_000300: -1.203e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

GenotypeQuality
all individuals: 1102
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 739
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1770
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1121
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 21328
bin: 9.75e1
variant carriers: 471

GenotypeQuality
all individuals: 1172
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 931
bin: 7.5e0
variant carriers: 3

East Asian
type: Population
allele count: 425
allele frequency: 5.580357142857143e-2
allele num: 7616
num of homozygotes: 12

African
type: Population
allele count: 7
allele frequency: 7.371524852569503e-4
allele num: 9496
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.667481662591687e-3
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.034417904833553e-3
allele num: 10634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.890374147316199e-4
allele num: 58052
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.527486414760521e-3
allele num: 15826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.738525730180807e-4
allele num: 5752
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 2.171529e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.64e-2

FS
type: SiteQuality
SIO_000300: 2.617e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
all individuals: 931
bin: 7.5e0
variant carriers: 161

GenotypeQuality
all individuals: 2996
bin: 2.5e0
variant carriers: 141

GenotypeQuality
all individuals: 1054
bin: 5.75e1
variant carriers: 390

GenotypeQuality
all individuals: 1458
bin: 7.75e1
variant carriers: 351

GenotypeQuality
all individuals: 3546
bin: 6.75e1
variant carriers: 392

GenotypeQuality
all individuals: 739
bin: 8.75e1
variant carriers: 285

GenotypeQuality
all individuals: 1102
bin: 5.25e1
variant carriers: 358

Other
type: Population
allele count: 181
allele frequency: 2.212713936430318e-1
allele num: 818
num of homozygotes: 21

Latino
type: Population
allele count: 2227
allele frequency: 2.094226067331202e-1
allele num: 10634
num of homozygotes: 223

African
type: Population
allele count: 4988
allele frequency: 5.25273799494524e-1
allele num: 9496
num of homozygotes: 1326

European (Finnish)
type: Population
allele count: 1255
allele frequency: 2.181849791376912e-1
allele num: 5752
num of homozygotes: 163

East Asian
type: Population
allele count: 540
allele frequency: 7.090336134453781e-2
allele num: 7616
num of homozygotes: 18

South Asian
type: Population
allele count: 3168
allele frequency: 2.001769240490332e-1
allele num: 15826
num of homozygotes: 313

European (Non-Finnish)
type: Population
allele count: 14369
allele frequency: 2.475194653069662e-1
allele num: 58052
num of homozygotes: 1788

DP
type: SiteQuality
SIO_000300: 2.171529e6

MQ
type: SiteQuality
SIO_000300: 5.823e1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.64e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.485e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 2.617e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
all individuals: 10797
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3546
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1582
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 855
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21328
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1172
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1054
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 3.545168067226891e-3
allele num: 7616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.03355612209743e-4
allele num: 58052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10634
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 2.617e0

QD
type: SiteQuality
SIO_000300: 1.485e1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

DP
type: SiteQuality
SIO_000300: 2.171529e6

GenotypeQuality
all individuals: 1890
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1075
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21328
bin: 9.75e1
variant carriers: 52

East Asian
type: Population
allele count: 12
allele frequency: 1.57563025210084e-3
allele num: 7616
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.791069924178601e-3
allele num: 9496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10634
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.89561481107039e-4
allele num: 15826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.72259353682905e-5
allele num: 58052
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

FS
type: SiteQuality
SIO_000300: 2.617e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.64e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

DP
type: SiteQuality
SIO_000300: 2.171529e6

African
type: Population
allele count: 6
allele frequency: 6.318449873631002e-4
allele num: 9496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.171529e6

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.64e-2

MQ
type: SiteQuality
SIO_000300: 5.823e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

FS
type: SiteQuality
SIO_000300: 2.617e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
all individuals: 1497
bin: 2.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1179
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2507
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7061
bin: 6.25e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.219575016097875e-4
allele num: 27954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.079027355623101e-4
allele num: 3290
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 5.681818181818182e-3
allele num: 1584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.122082585278277e-4
allele num: 8912
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.682e0

FS
type: SiteQuality
SIO_000300: 3.0189e1

QD
type: SiteQuality
SIO_000300: 9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

DP
type: SiteQuality
SIO_000300: 1.39422e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 4990
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GenotypeQuality
all individuals: 892
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.660989888238425e-4
allele num: 7516
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.683501683501683e-3
allele num: 1188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.094328558264221e-4
allele num: 23874
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

DP
type: SiteQuality
SIO_000300: 1.371197e6

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

QD
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 1.4794e1

MQ
type: SiteQuality
SIO_000300: 5.873e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1107
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64866
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11194
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228048630725777e-4
allele num: 16286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 1.578e0

DP
type: SiteQuality
SIO_000300: 2.476893e6

QD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.583e0

MQ
type: SiteQuality
SIO_000300: 5.449e1

GenotypeQuality
all individuals: 691
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4948
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variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52012647452268e-5
allele num: 65784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 4.707e0

VQSLOD
type: SiteQuality
SIO_000300: -1.149e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.647e1

DP
type: SiteQuality
SIO_000300: 2.516432e6

QD
type: SiteQuality
SIO_000300: 1.664e1

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 973
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variant carriers: 0

GenotypeQuality
all individuals: 14761
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.011e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.331e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -5.119e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

QD
type: SiteQuality
SIO_000300: 1.478e1

DP
type: SiteQuality
SIO_000300: 2.537791e6

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14132
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.16e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 2.428849e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.326e0

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
all individuals: 4474
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14130
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GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.403e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 2.428845e6

MQ
type: SiteQuality
SIO_000300: 6.15e1

VQSLOD
type: SiteQuality
SIO_000300: -1.777e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

FS
type: SiteQuality
SIO_000300: 9.428000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.451241671714113e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

FS
type: SiteQuality
SIO_000300: 1.273e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.667e0

DP
type: SiteQuality
SIO_000300: 2.428912e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.639e1

FS
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.154e0

QD
type: SiteQuality
SIO_000300: 1.402e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 2.42852e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
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FS
type: SiteQuality
SIO_000300: 4.782e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.428606e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.448e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 2.678779408339157e-3
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.428959e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 14087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4458
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.765e0

QD
type: SiteQuality
SIO_000300: 1.52e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.054e1

VQSLOD
type: SiteQuality
SIO_000300: -4.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.427586e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.756e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.305e0

DP
type: SiteQuality
SIO_000300: 2.427462e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14082
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23765
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.427503e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.335e0

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 5.208e0

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14081
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 2.427633e6

FS
type: SiteQuality
SIO_000300: 1.455e0

QD
type: SiteQuality
SIO_000300: 1.33e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 2.427534e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 1.6606e1

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

QD
type: SiteQuality
SIO_000300: 1.603e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.427466e6

QD
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -4.848e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

FS
type: SiteQuality
SIO_000300: 2.7678e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14078
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.609840476648087e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.062e0

DP
type: SiteQuality
SIO_000300: 2.428248e6

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 1.744e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23821
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

FS
type: SiteQuality
SIO_000300: 1.189e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 2.427382e6

QD
type: SiteQuality
SIO_000300: 1.057e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23825
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

DP
type: SiteQuality
SIO_000300: 2.427506e6

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 2.427272e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.03e0

GenotypeQuality
all individuals: 23832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.427224e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -3.422e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 5.582e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 14063
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

DP
type: SiteQuality
SIO_000300: 2.427125e6

MQ
type: SiteQuality
SIO_000300: 5.859e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.42702e6

FS
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.843e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.358e0

QD
type: SiteQuality
SIO_000300: 1.696e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
SIO_000300: -1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.841e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.881e1

DP
type: SiteQuality
SIO_000300: 2.427061e6

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8304
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.426919e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: -2.852e0

QD
type: SiteQuality
SIO_000300: 1.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.782e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14061
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600104004160167e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.348e1

FS
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

DP
type: SiteQuality
SIO_000300: 2.427166e6

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14058
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3000
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variant carriers: 0

GenotypeQuality
all individuals: 23825
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.97e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

QD
type: SiteQuality
SIO_000300: 1.359e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

DP
type: SiteQuality
SIO_000300: 2.426559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.115e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14058
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 3001
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.433e1

DP
type: SiteQuality
SIO_000300: 2.427066e6

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.902e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

FS
type: SiteQuality
SIO_000300: 6.43e-1

DP
type: SiteQuality
SIO_000300: 2.426058e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.546e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3322
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GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.95e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.311e1

FS
type: SiteQuality
SIO_000300: 8.837999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.515e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 2.425354e6

GenotypeQuality
all individuals: 4464
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8296
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GenotypeQuality
all individuals: 2152
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.425215e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 2.599e0

QD
type: SiteQuality
SIO_000300: 1.246e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.958e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.806e1

VQSLOD
type: SiteQuality
SIO_000300: -1.832e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 23770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14043
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
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variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.848e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e0

QD
type: SiteQuality
SIO_000300: 1.492e1

FS
type: SiteQuality
SIO_000300: 3.083e0

VQSLOD
type: SiteQuality
SIO_000300: -4.414e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 2.424357e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2997
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.4237e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.617e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.99e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.796e0

GenotypeQuality
all individuals: 3311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4455
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.344803614876608e-4
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.910925674364448e-3
allele num: 10306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.047e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.174e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

DP
type: SiteQuality
SIO_000300: 2.419823e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

GenotypeQuality
all individuals: 2994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 23568
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.492e1

FS
type: SiteQuality
SIO_000300: 5.79e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 2.417095e6

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
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variant carriers: 0

GenotypeQuality
all individuals: 14006
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.018e0

DP
type: SiteQuality
SIO_000300: 2.412611e6

MQRankSum
type: SiteQuality
SIO_000300: -1.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.054999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.854e0

QD
type: SiteQuality
SIO_000300: 1.007e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 4430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.830223880597014e-4
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 9.42e0

DP
type: SiteQuality
SIO_000300: 2.408791e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508568670045861e-5
allele num: 66288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.68e0

DP
type: SiteQuality
SIO_000300: 2.403534e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.493e1

GenotypeQuality
all individuals: 3264
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7959
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22704
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424830261881668e-4
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 649
allele frequency: 6.429562116108579e-2
allele num: 10094
num of homozygotes: 19

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.561093636583596e-5
allele num: 66128
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.094240837696335e-3
allele num: 11460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

FS
type: SiteQuality
SIO_000300: 7.97e-1

DP
type: SiteQuality
SIO_000300: 2.394509e6

QD
type: SiteQuality
SIO_000300: 1.362e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.81e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
all individuals: 8026
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 7.25e1
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GenotypeQuality
all individuals: 2150
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025169409486931e-5
allele num: 66112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.182611858857766e-3
allele num: 16494
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

FS
type: SiteQuality
SIO_000300: 2.216e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 2.374437e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 2142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
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GenotypeQuality
all individuals: 13594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515656734062869e-5
allele num: 65978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

QD
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

DP
type: SiteQuality
SIO_000300: 2.361256e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 2507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.532285250222181e-5
allele num: 65262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.35e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.296e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 2.218125e6

VQSLOD
type: SiteQuality
SIO_000300: -2.875e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532426137060194e-5
allele num: 65256
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017708121310808e-4
allele num: 9826
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.795074758135444e-5
allele num: 11370
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.481e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.213684e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532426137060194e-5
allele num: 65256
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.213684e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533507130808158e-5
allele num: 65210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 2.203679e6

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.24e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533507130808158e-5
allele num: 65210
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 2.203679e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 49
allele frequency: 2.968617472434266e-3
allele num: 16506
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.636e1

FS
type: SiteQuality
SIO_000300: 1.137e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49802087081684e-5
allele num: 66696
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQ
type: SiteQuality
SIO_000300: 5.263e1

MQRankSum
type: SiteQuality
SIO_000300: -2.751e0

DP
type: SiteQuality
SIO_000300: 2.50541e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0