17-42990828-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990828
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990828
    reference: chr 17
allele count: 21
allele frequency: 1.880372492836676e-4
allele num: 111680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.239C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+268C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1945C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.95-30C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-30C>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14970
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12176
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-42990830-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990830
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990830
    reference: chr 17
allele count: 6
allele frequency: 5.388221348132981e-5
allele num: 111354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.237A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1943A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+266A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.95-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-32A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-32A>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

17-42990848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990848
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990848
    reference: chr 17
allele count: 1
allele frequency: 9.437345463468036e-6
allele num: 105962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1925G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+248G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.219G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.95-50G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-50G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-42990924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990924
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990924
    reference: chr 17
allele count: 1
allele frequency: 1.012125260622255e-5
allele num: 98802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+172G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.143G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+47G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1849G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-126G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

17-42990925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990925
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990925
    reference: chr 17
allele count: 11
allele frequency: 1.113653390568368e-4
allele num: 98774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1848C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.142C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+46C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-127C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+171C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-127C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13279
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

17-42990925-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990925
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990925
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 98774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.142C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1848C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+171C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-127C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+46C>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-42990926-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990926
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990926
    reference: chr 17
allele count: 1
allele frequency: 1.003935426873344e-5
allele num: 99608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+170A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.141A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1847A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+45A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-128A>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

17-42990935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990935
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990935
    reference: chr 17
allele count: 3
allele frequency: 2.993235288248558e-5
allele num: 100226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1838C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.132C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+36C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-137C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+161C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13802
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

17-42990940-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990940
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990940
    reference: chr 17
allele count: 2
allele frequency: 1.96367206676485e-5
allele num: 101850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.127A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+156A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-142A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1833A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+31A>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

17-42990943-CTGTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990943
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990939
    reference: chr 17
allele count: 2
allele frequency: 1.955301800832959e-5
allele num: 102286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+149_*18-146delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+149_*263-146delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1826_82+1829delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-149_523-146delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-146_-44+149delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-146_-115+149delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-146_571+149delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.120_123delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-146_618+149delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-146_618+149delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+24_94+27delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+149_618+152delAACA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-146_618+149delAACA
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTGTT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-42990945-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990945
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990945
    reference: chr 17
allele count: 2
allele frequency: 1.949621773375965e-5
allele num: 102584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.122C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-43-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1828C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.619-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+26C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.619-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.572-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*263-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*18-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-114-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.619-147C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+151C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-42990949-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990949
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990949
    reference: chr 17
allele count: 1
allele frequency: 9.603933771272713e-6
allele num: 104124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.118C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-151C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+22C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1824C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+147C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+147C>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-42990951-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990951
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990951
    reference: chr 17
allele count: 1
allele frequency: 9.49541371517557e-6
allele num: 105314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-153G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1822G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.116G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+145G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+20G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-42990951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990951
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990951
    reference: chr 17
allele count: 1
allele frequency: 9.49541371517557e-6
allele num: 105314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.116G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-153G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+20G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+145G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1822G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS

17-42990962-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990962
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990962
    reference: chr 17
allele count: 1
allele frequency: 8.988602452090748e-6
allele num: 111252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-164A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+9A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.105A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+134A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1811A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+134A>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31065
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

17-42990970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990970
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990970
    reference: chr 17
allele count: 52
allele frequency: 4.51773209848656e-4
allele num: 115102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94+1G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-172G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.97G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+126G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1803G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: c.94+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-42990971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990971
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990971
    reference: chr 17
allele count: 4
allele frequency: 3.45865181752153e-5
allele num: 115652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.94G>A
  hgvsp: ENST00000587997.1:c.94G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.96G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-173G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+125G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1802G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+125G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.94G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

17-42990977-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990977
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990977
    reference: chr 17
allele count: 1
allele frequency: 8.506873553831496e-6
allele num: 117552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.90T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-179T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1796T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.88T>C
  hgvsp: ENST00000587997.1:c.88T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+119T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+119T>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp30Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-42990977-ATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990977
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990975
    reference: chr 17
allele count: 1
allele frequency: 8.506873553831496e-6
allele num: 117552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.86_87delGA
  hgvsp: ENSP00000465624.1:p.Asp30LeufsTer21
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+117_618+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+117_-44+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+117_571+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+117_618+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+117_618+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.88_89delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-181_523-180delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+117_618+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+117_-115+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+117_*17+118delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1794_82+1795delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+117_*262+118delGA
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp30LeufsTer21
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: ATC
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-42990986-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990986
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990986
    reference: chr 17
allele count: 78
allele frequency: 6.531459865016496e-4
allele num: 119422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.79A>T
  hgvsp: ENSP00000465624.1:p.Arg27Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1787A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-188A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+110A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+110A>T
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8351
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33079
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg27Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-42990990-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990989
    reference: chr 17
allele count: 51
allele frequency: 4.255248139371892e-4
allele num: 119852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.76delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-193delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.74delG
  hgvsp: ENSP00000465624.1:p.Glu26ArgfsTer36
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+105delG
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1782delG
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11510
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Glu26ArgfsTer36
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: TC
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-42990994-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42990994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42990994
    reference: chr 17
allele count: 1
allele frequency: 8.314072398942449e-6
allele num: 120278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.71G>C
  hgvsp: ENSP00000465624.1:p.Glu25Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-196G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.73G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1779G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+102G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+102G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu25Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

17-42991006-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991006
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991006
    reference: chr 17
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.61G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1767G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.59G>C
  hgvsp: ENSP00000465624.1:p.Asp21His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-208G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+90G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+90G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp21His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-42991008-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991008
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991008
    reference: chr 17
allele count: 2
allele frequency: 1.652346331791144e-5
allele num: 121040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.57G>C
  hgvsp: ENSP00000465624.1:p.Arg20Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1765G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-210G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+88G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.59G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg20Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-42991013-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991013
    reference: chr 17
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.52T>G
  hgvsp: ENST00000587997.1:c.52T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.54T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-215T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1760T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+83T>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+83T>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr18Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

17-42991015-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991015
    reference: chr 17
allele count: 7
allele frequency: 5.777865821447438e-5
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1758A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-217A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.52A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.50A>T
  hgvsp: ENSP00000465624.1:p.Thr18Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+81A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+81A>T
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr18Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

17-42991019-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991019
    reference: chr 17
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-221T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.48T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.46T>C
  hgvsp: ENST00000587997.1:c.46T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1754T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+77T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+77T>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala16Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

17-42991022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991022
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991022
    reference: chr 17
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-224A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.43A>G
  hgvsp: ENST00000587997.1:c.43A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+74A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.45A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1751A>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu15Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

17-42991022-TTCTCTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991022
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991016
    reference: chr 17
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+68_618+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+68_571+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.37_42delCAGAGA
  hgvsp: ENSP00000465624.1:p.Asp13_Arg14del
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+68_618+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+68_-44+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+68_*17+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+68_-115+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+68_618+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+68_618+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.39_44delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-230_523-225delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+68_*262+73delCAGAGA
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp13_Arg14del
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: TTCTCTG
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum

17-42991028-GTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991026
    reference: chr 17
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+66_-44+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.35_36delGA
  hgvsp: ENSP00000465624.1:p.Asp13GlnfsTer4
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+66_571+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+66_618+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+66_618+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-232_523-231delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+66_-115+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+66_*262+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.37_38delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1743_82+1744delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+66_618+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+66_618+67delGA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+66_*17+67delGA
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp13GlnfsTer4
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: GTC
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

17-42991030-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991030
    reference: chr 17
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-232G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1743G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.35G>C
  hgvsp: ENSP00000465624.1:p.Asp13His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+66G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.37G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp13His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

17-42991032-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991030
    reference: chr 17
allele count: 175
allele frequency: 1.442846777917024e-3
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+62_-115+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+62_618+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+62_*17+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.31_32delCA
  hgvsp: ENSP00000465624.1:p.Asp11GlufsTer6
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+62_-44+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.33_34delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+62_618+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+62_571+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-236_523-235delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+62_*262+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+62_618+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+62_618+63delCA
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1739_82+1740delCA
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 33128
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Asp11GlufsTer6
num of homozygotes: 3
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: CTG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-42991034-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991034
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991034
    reference: chr 17
allele count: 83
allele frequency: 6.85542487115105e-4
allele num: 121072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.31C>G
  hgvsp: ENSP00000465624.1:p.Asp11Glu
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.33C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1739C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-236C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+62C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+62C>G
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33111
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Asp11Glu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-42991035-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991035
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991035
    reference: chr 17
allele count: 110
allele frequency: 9.094667217858619e-4
allele num: 120950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.30A>C
  hgvsp: ENSP00000465624.1:p.Asp11Ala
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1738A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-237A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.32A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+61A>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33051
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp11Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-42991036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991036
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991036
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.29G>C
  hgvsp: ENSP00000465624.1:p.Asp11His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-238G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1737G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.31G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+60G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+60G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp11His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-42991041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991041
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991041
    reference: chr 17
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.24G>A
  hgvsp: ENSP00000465624.1:p.Gly9Glu
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+55G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-243G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1732G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly9Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

17-42991044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991044
    reference: chr 17
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1729G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-246G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.23G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.21G>A
  hgvsp: ENSP00000465624.1:p.Arg8Lys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+52G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+52G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg8Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-42991046-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991046
    reference: chr 17
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.21G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.19G>C
  hgvsp: ENSP00000465624.1:p.Glu7Asp
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1727G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-248G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+50G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+50G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu7Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

17-42991048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991048
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991048
    reference: chr 17
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.19G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.17G>A
  hgvsp: ENSP00000465624.1:p.Glu7Lys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1725G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-250G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+48G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+48G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu7Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

17-42991049-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991049
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.16T>C
  hgvsp: ENST00000587997.1:c.16T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.18T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-251T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+47T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1724T>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr6Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

17-42991051-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991051
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991051
    reference: chr 17
allele count: 42
allele frequency: 3.460264627856778e-4
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-253A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465624
  ensembl transcript: ENST00000587997
  gene symbol: GFAP
  hgvsc: ENST00000587997.1:c.14A>T
  hgvsp: ENSP00000465624.1:p.Thr6Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1722A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000590922
  gene symbol: GFAP
  hgvsc: ENST00000590922.1:n.16A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+45A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+45A>T
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr6Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

17-42991069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991069
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991069
    reference: chr 17
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-271C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1704C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+27C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+27C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-42991070-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991070
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991070
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1703G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+26G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-272G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+26G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

17-42991078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991078
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1695G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-280G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+18G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+18G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

17-42991083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991083
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991083
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-285C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1690C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+13C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+13C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

17-42991085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991085
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-287G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1688G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+11G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+11G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-42991088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991088
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991088
    reference: chr 17
allele count: 9
allele frequency: 7.412776331828814e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1685C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-290C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+8C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.618+8C>T
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-42991091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991091
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991091
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1682G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-293G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+5G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+5G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.618+5G>A
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

17-42991093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991093
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991093
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.618+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.618+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*262+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1680G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-44+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.618+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.618+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.523-295G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.571+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*17+3G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-115+3G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.618+3G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

17-42991105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991105
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.609C>T
  hgvsp: ENST00000435360.2:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1668C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.609C>T
  hgvsp: ENST00000586793.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*8C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*253C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.609C>T
  hgvsp: ENST00000253408.5:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.609C>T
  hgvsp: ENST00000592320.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+291C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-124C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.562C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile203Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

17-42991109-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991109
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991109
    reference: chr 17
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.605A>C
  hgvsp: ENSP00000403962.1:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-57A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1664A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.605A>C
  hgvsp: ENSP00000253408.4:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.605A>C
  hgvsp: ENSP00000468500.1:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.*4A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*249A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+287A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-128A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.605A>C
  hgvsp: ENSP00000465320.1:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.558A>C
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys202Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

17-42991113-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991113
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991113
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-132A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.601A>C
  hgvsp: ENST00000586793.1:c.601A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*245A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.601A>C
  hgvsp: ENST00000253408.5:c.601A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1660A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-61A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.540A>C
  hgvsp: ENSP00000366189.4:p.Ter180CysextTer35
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.601A>C
  hgvsp: ENST00000435360.2:c.601A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.601A>C
  hgvsp: ENST00000592320.1:c.601A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+283A>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.554A>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter180CysextTer35
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-42991115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991115
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991115
    reference: chr 17
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.538T>C
  hgvsp: ENSP00000366189.4:p.Ter180ArgextTer35
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-134T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.599T>C
  hgvsp: ENSP00000253408.4:p.Leu200Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1658T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.599T>C
  hgvsp: ENSP00000403962.1:p.Leu200Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*243T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.552T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-63T>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.599T>C
  hgvsp: ENSP00000468500.1:p.Leu200Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.599T>C
  hgvsp: ENSP00000465320.1:p.Leu200Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+281T>C
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter180ArgextTer35
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-42991121-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991121
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991121
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.593G>A
  hgvsp: ENSP00000468500.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*237G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.593G>A
  hgvsp: ENSP00000403962.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.593G>A
  hgvsp: ENSP00000253408.4:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1652G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-140G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.546G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.532G>A
  hgvsp: ENSP00000366189.4:p.Gly178Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.593G>A
  hgvsp: ENSP00000465320.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+275G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg198Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

17-42991124-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991124
    reference: chr 17
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.590T>A
  hgvsp: ENSP00000403962.1:p.Ile197Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+272T>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-143T>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.590T>A
  hgvsp: ENSP00000465320.1:p.Ile197Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.590T>A
  hgvsp: ENSP00000468500.1:p.Ile197Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.590T>A
  hgvsp: ENSP00000253408.4:p.Ile197Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-72T>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*234T>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.529T>A
  hgvsp: ENSP00000366189.4:p.Ser177Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1649T>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.543T>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ile197Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

17-42991128-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991128
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991128
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*230G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.586G>C
  hgvsp: ENSP00000403962.1:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.525G>C
  hgvsp: ENSP00000366189.4:p.Arg175Ser
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1645G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+268G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.539G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-76G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.586G>C
  hgvsp: ENSP00000468500.1:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.586G>C
  hgvsp: ENSP00000465320.1:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.586G>C
  hgvsp: ENSP00000253408.4:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-147G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu196Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

17-42991130-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991130
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991130
    reference: chr 17
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.523A>T
  hgvsp: ENSP00000366189.4:p.Arg175Trp
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.584A>T
  hgvsp: ENSP00000403962.1:p.Glu195Val
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.584A>T
  hgvsp: ENSP00000465320.1:p.Glu195Val
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.584A>T
  hgvsp: ENSP00000468500.1:p.Glu195Val
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-78A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.584A>T
  hgvsp: ENSP00000253408.4:p.Glu195Val
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.537A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-149A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1643A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*228A>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+266A>T
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu195Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-42991131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991131
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991131
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-79G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.583G>A
  hgvsp: ENSP00000468500.1:p.Glu195Lys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.583G>A
  hgvsp: ENSP00000403962.1:p.Glu195Lys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.522G>A
  hgvsp: ENST00000376990.4:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.583G>A
  hgvsp: ENSP00000465320.1:p.Glu195Lys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-150G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+265G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.536G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.583G>A
  hgvsp: ENSP00000253408.4:p.Glu195Lys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*227G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1642G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu195Lys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

17-42991138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991138
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991138
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1635G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-157G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.576G>A
  hgvsp: ENST00000586793.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.529G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*220G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.576G>A
  hgvsp: ENST00000253408.5:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.515G>A
  hgvsp: ENSP00000366189.4:p.Arg172His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.576G>A
  hgvsp: ENST00000435360.2:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-86G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.576G>A
  hgvsp: ENST00000592320.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+258G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg172His
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-42991139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991139
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991139
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.575C>T
  hgvsp: ENSP00000468500.1:p.Ser192Leu
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.575C>T
  hgvsp: ENSP00000253408.4:p.Ser192Leu
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+257C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.528C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.514C>T
  hgvsp: ENSP00000366189.4:p.Arg172Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.575C>T
  hgvsp: ENSP00000403962.1:p.Ser192Leu
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1634C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-87C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*219C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.575C>T
  hgvsp: ENSP00000465320.1:p.Ser192Leu
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser192Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

17-42991155-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991155
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991155
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.559G>C
  hgvsp: ENSP00000465320.1:p.Glu187Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-103G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.498G>C
  hgvsp: ENSP00000366189.4:p.Trp166Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.559G>C
  hgvsp: ENSP00000403962.1:p.Glu187Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.559G>C
  hgvsp: ENSP00000468500.1:p.Glu187Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.559G>C
  hgvsp: ENSP00000253408.4:p.Glu187Gln
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1618G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-174G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*203G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+241G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.512G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu187Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

17-42991161-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991161
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991161
    reference: chr 17
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+235G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.492G>C
  hgvsp: ENSP00000366189.4:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1612G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*197G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-180G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.553G>C
  hgvsp: ENSP00000403962.1:p.Asp185His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.553G>C
  hgvsp: ENSP00000468500.1:p.Asp185His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.506G>C
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.553G>C
  hgvsp: ENSP00000465320.1:p.Asp185His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.553G>C
  hgvsp: ENSP00000253408.4:p.Asp185His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-109G>C
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp185His
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

17-42991166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991166
    reference: chr 17
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-114G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.548G>A
  hgvsp: ENSP00000468500.1:p.Arg183His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1607G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*192G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.501G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.548G>A
  hgvsp: ENSP00000465320.1:p.Arg183His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.548G>A
  hgvsp: ENSP00000403962.1:p.Arg183His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.548G>A
  hgvsp: ENSP00000253408.4:p.Arg183His
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.487G>A
  hgvsp: ENSP00000366189.4:p.Val163Ile
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-185G>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+230G>A
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183His
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-42991167-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991167
    reference: chr 17
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.547C>T
  hgvsp: ENSP00000468500.1:p.Arg183Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466163
  ensembl transcript: ENST00000588037
  gene symbol: GFAP
  hgvsc: ENST00000588037.1:c.568C>T
  hgvsp: ENST00000588037.1:c.568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+229C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-186C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.547C>T
  hgvsp: ENSP00000465320.1:p.Arg183Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-115C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.547C>T
  hgvsp: ENSP00000253408.4:p.Arg183Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.547C>T
  hgvsp: ENSP00000403962.1:p.Arg183Cys
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.500C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.486C>T
  hgvsp: ENST00000376990.4:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*191C>T
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1606C>T
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12010
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

17-42991175-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991175
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991175
    reference: chr 17
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+221C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-194C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.492C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-123C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*183C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.539C>A
  hgvsp: ENSP00000465320.1:p.Thr180Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1598C>A
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.478C>A
  hgvsp: ENSP00000366189.4:p.Pro160Thr
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466163
  ensembl transcript: ENST00000588037
  gene symbol: GFAP
  hgvsc: ENST00000588037.1:c.560C>A
  hgvsp: ENSP00000466163.1:p.Thr187Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.539C>A
  hgvsp: ENSP00000403962.1:p.Thr180Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.539C>A
  hgvsp: ENSP00000468500.1:p.Thr180Asn
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.539C>A
  hgvsp: ENSP00000253408.4:p.Thr180Asn
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr180Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

17-42991178-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991178
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991178
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.536C>G
  hgvsp: ENSP00000253408.4:p.Ala179Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-126C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.475C>G
  hgvsp: ENSP00000366189.4:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466163
  ensembl transcript: ENST00000588037
  gene symbol: GFAP
  hgvsc: ENST00000588037.1:c.557C>G
  hgvsp: ENSP00000466163.1:p.Ala186Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.536C>G
  hgvsp: ENSP00000468500.1:p.Ala179Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.536C>G
  hgvsp: ENSP00000403962.1:p.Ala179Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1595C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+218C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-197C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.536C>G
  hgvsp: ENSP00000465320.1:p.Ala179Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.489C>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*180C>G
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala179Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-42991184-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42991184
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42991184
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465565
  ensembl transcript: ENST00000588957
  gene symbol: GFAP
  hgvsc: ENST00000588957.1:c.-203A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131095
  ensembl transcript: ENST00000591327
  gene symbol: GFAP
  hgvsc: ENST00000591327.1:n.483A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465208
  ensembl transcript: ENST00000585728
  gene symbol: GFAP
  hgvsc: ENST00000585728.1:c.*174A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465629
  ensembl transcript: ENST00000588316
  gene symbol: GFAP
  hgvsc: ENST00000588316.1:c.522+212A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000403962
  ensembl transcript: ENST00000435360
  gene symbol: GFAP
  hgvsc: ENST00000435360.2:c.530A>G
  hgvsp: ENSP00000403962.1:p.Asp177Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000366189
  ensembl transcript: ENST00000376990
  gene symbol: GFAP
  hgvsc: ENST00000376990.4:c.469A>G
  hgvsp: ENSP00000366189.4:p.Met157Val
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466163
  ensembl transcript: ENST00000588037
  gene symbol: GFAP
  hgvsc: ENST00000588037.1:c.551A>G
  hgvsp: ENSP00000466163.1:p.Asp184Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000468500
  ensembl transcript: ENST00000586793
  gene symbol: GFAP
  hgvsc: ENST00000586793.1:c.530A>G
  hgvsp: ENSP00000468500.1:p.Asp177Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000465320
  ensembl transcript: ENST00000592320
  gene symbol: GFAP
  hgvsc: ENST00000592320.1:c.530A>G
  hgvsp: ENSP00000465320.1:p.Asp177Gly
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000466598
  ensembl transcript: ENST00000588735
  gene symbol: GFAP
  hgvsc: ENST00000588735.1:c.82+1589A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000464795
  ensembl transcript: ENST00000586127
  gene symbol: GFAP
  hgvsc: ENST00000586127.1:c.-132A>G
  variant of: http://identifiers.org/hgnc/4235
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131095
  ensembl protein: ENSP00000253408
  ensembl transcript: ENST00000253408
  gene symbol: GFAP
  hgvsc: ENST00000253408.5:c.530A>G
  hgvsp: ENSP00000253408.4:p.Asp177Gly
  variant of: http://identifiers.org/hgnc/4235
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp177Gly
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 569
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4676
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6236
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1557
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.757469244288225e-4
allele num: 5690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.265519380857525e-4
allele num: 61246
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

FS
type: SiteQuality
SIO_000300: 7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.454522e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeDepth
all individuals: 620
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3511
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 611
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6556
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6224
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.633587786259542e-4
allele num: 7860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 1.434474e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

FS
type: SiteQuality
SIO_000300: 2.782e0

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeDepth
all individuals: 571
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15083
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9826
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 620
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4665
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7367
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.023122570083896e-4
allele num: 9774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58140
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.266e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.345631e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeDepth
all individuals: 67
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2917
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7934
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.846858493702212e-5
allele num: 54146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.744e-1

DP
type: SiteQuality
SIO_000300: 1.09467e6

QD
type: SiteQuality
SIO_000300: 1.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 3.805e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeDepth
all individuals: 76
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2947
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4765
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 918
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.386748844375963e-3
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.335291761249833e-4
allele num: 14978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.937e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.092e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.097484e6

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 623
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4765
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6104
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 784
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 3.937e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.097484e6

GenotypeDepth
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1283
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4561
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6633
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15068
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.524855138761818e-4
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.101492e6

VQSLOD
type: SiteQuality
SIO_000300: -1.786e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 702
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5038
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14803
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.328830926874709e-4
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15126
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 4.983e0

DP
type: SiteQuality
SIO_000300: 1.158341e6

GenotypeDepth
all individuals: 64
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3551
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3811
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.585900240255316e-5
allele num: 55774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.205721e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 8.189e0

VQSLOD
type: SiteQuality
SIO_000300: -1.402e0

QD
type: SiteQuality
SIO_000300: 1.591e1

GenotypeDepth
all individuals: 22519
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.571173487608028e-5
allele num: 56004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.652e1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

DP
type: SiteQuality
SIO_000300: 1.234781e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeDepth
all individuals: 1405
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4007
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1392
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.284669865204478e-4
allele num: 8754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.106e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 1.6408e1

DP
type: SiteQuality
SIO_000300: 1.258755e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeDepth
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.755433065337219e-5
allele num: 56966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15376
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.372e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 1.300291e6

FS
type: SiteQuality
SIO_000300: 2.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e0

QD
type: SiteQuality
SIO_000300: 1.368e1

GenotypeDepth
all individuals: 76
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8972
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5379
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.453278265358803e-5
allele num: 15496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.472e0

FS
type: SiteQuality
SIO_000300: 4.529e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.322263e6

QD
type: SiteQuality
SIO_000300: 1.29e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeDepth
all individuals: 64
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2751
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 160
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.453278265358803e-5
allele num: 15496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

DP
type: SiteQuality
SIO_000300: 1.322263e6

QD
type: SiteQuality
SIO_000300: 1.29e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.472e0

FS
type: SiteQuality
SIO_000300: 4.529e0

GenotypeDepth
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1496
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 860
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.264879087833605e-5
allele num: 15962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.978e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.440908e6

QD
type: SiteQuality
SIO_000300: 7.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.34e-1

GenotypeDepth
all individuals: 1121
bin: 4.25e1
variant carriers: 7

GenotypeDepth
all individuals: 32391
bin: 2.25e1
variant carriers: 6

GenotypeDepth
all individuals: 66
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33521
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 9.75e1
variant carriers: 50

GenotypeQuality
all individuals: 995
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 8.129044598170167e-4
allele num: 62738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.081002542680712e-5
allele num: 11012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 1.514177e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.182e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeDepth
all individuals: 75
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2311
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32388
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.342561760695144e-5
allele num: 63066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.865e1

DP
type: SiteQuality
SIO_000300: 1.52141e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

GenotypeDepth
all individuals: 67
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 654
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64256
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.029e1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 1.562655e6

QD
type: SiteQuality
SIO_000300: 1.782e1

GenotypeDepth
all individuals: 160
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7579
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004217714400482e-4
allele num: 9958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.029e1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 1.562655e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

QD
type: SiteQuality
SIO_000300: 1.782e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

GenotypeDepth
all individuals: 729
bin: 4.75e1
variant carriers: 5

GenotypeDepth
all individuals: 167
bin: 9.75e1
variant carriers: 7

GenotypeDepth
all individuals: 94
bin: 6.75e1
variant carriers: 3

GenotypeDepth
all individuals: 78
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3652
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 9.75e1
variant carriers: 78

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.588138133545408e-5
allele num: 65386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 73
allele frequency: 8.530030380930123e-3
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.289e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.29e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.593761e6

GenotypeDepth
all individuals: 332
bin: 5.25e1
variant carriers: 8

GenotypeDepth
all individuals: 420
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33141
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 49
allele frequency: 4.838072669826225e-3
allele num: 10128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65656
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 1.604518e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 1.369e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

GenotypeDepth
all individuals: 81
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515564851019975e-5
allele num: 65982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 1.612514e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.314e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.539e0

QD
type: SiteQuality
SIO_000300: 1.891e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

GenotypeDepth
all individuals: 8711
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

DP
type: SiteQuality
SIO_000300: 1.626446e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeDepth
all individuals: 11845
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2879
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007428348019608e-5
allele num: 66502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.163e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: -5.08e-2

DP
type: SiteQuality
SIO_000300: 1.627194e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.413e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

GenotypeDepth
all individuals: 119
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33219
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.629935e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.63e0

VQSLOD
type: SiteQuality
SIO_000300: -3.099e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

QD
type: SiteQuality
SIO_000300: 3.049e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 8761
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 804
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.242424242424243e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.398e1

DP
type: SiteQuality
SIO_000300: 1.630056e6

GenotypeDepth
all individuals: 8760
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1636
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.628e0

QD
type: SiteQuality
SIO_000300: 1.428e1

MQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

DP
type: SiteQuality
SIO_000300: 1.631759e6

GenotypeDepth
all individuals: 807
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 101
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8437
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001560811622043e-5
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.82e1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.995e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

DP
type: SiteQuality
SIO_000300: 1.632436e6

GenotypeDepth
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1649
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8437
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.82e1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

MQ
type: SiteQuality
SIO_000300: 5.995e1

DP
type: SiteQuality
SIO_000300: 1.632436e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeDepth
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8440
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.709e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 6.103e0

MQ
type: SiteQuality
SIO_000300: 6.189e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.637739e6

GenotypeDepth
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.647e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

FS
type: SiteQuality
SIO_000300: 1.226e0

DP
type: SiteQuality
SIO_000300: 1.638298e6

QD
type: SiteQuality
SIO_000300: 1.894e1

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 4

GenotypeDepth
all individuals: 11944
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 292
bin: 9.75e1
variant carriers: 118

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 9.75e1
variant carriers: 172

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36699
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999670036296008e-5
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 167
allele frequency: 1.60824345146379e-2
allele num: 10384
num of homozygotes: 3

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

QD
type: SiteQuality
SIO_000300: 1.693e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

FS
type: SiteQuality
SIO_000300: 9.58e-1

DP
type: SiteQuality
SIO_000300: 1.648213e6

MQ
type: SiteQuality
SIO_000300: 6.094e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

GenotypeDepth
all individuals: 53
bin: 8.75e1
variant carriers: 8

GenotypeDepth
all individuals: 108
bin: 6.75e1
variant carriers: 7

GenotypeDepth
all individuals: 209
bin: 9.75e1
variant carriers: 22

GenotypeDepth
all individuals: 121
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.75e1
variant carriers: 83

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8434
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.850275807722617e-5
allele num: 10152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 82
allele frequency: 4.967288587351587e-3
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

FS
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.636406e6

GenotypeDepth
all individuals: 2908
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 339
bin: 9.75e1
variant carriers: 79

GenotypeDepth
all individuals: 221
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 81
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.75e1
variant carriers: 110

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 106
allele frequency: 1.053259141494436e-2
allele num: 10064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.661142e6

FS
type: SiteQuality
SIO_000300: 8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

QD
type: SiteQuality
SIO_000300: 1.497e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

GenotypeDepth
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36653
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.579e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e0

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.640646e6

GenotypeDepth
all individuals: 108
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11961
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.332e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.128e0

DP
type: SiteQuality
SIO_000300: 1.6409e6

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.640996e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.533e0

FS
type: SiteQuality
SIO_000300: 3.057e0

QD
type: SiteQuality
SIO_000300: 1.321e1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: -5.666e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeDepth
all individuals: 833
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 36702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.846893633391037e-4
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.641507e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

GenotypeDepth
all individuals: 11970
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.328e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 1.456e0

DP
type: SiteQuality
SIO_000300: 1.641543e6

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2953
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.497e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.296e0

VQSLOD
type: SiteQuality
SIO_000300: -1.447e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.929e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.211e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 1.641355e6

GenotypeDepth
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 833
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.036627505183138e-3
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.896999310530891e-4
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

DP
type: SiteQuality
SIO_000300: 1.646493e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.249e0

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.284e0

DP
type: SiteQuality
SIO_000300: 1.64247e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.43e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

FS
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 1.642613e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.947e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.14e-1

QD
type: SiteQuality
SIO_000300: 1.014e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.351e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.642847e6

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.88e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.46e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.98e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.642947e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.442e0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 2.589e0

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 1.643159e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeDepth
all individuals: 180
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36701
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.77336327517706e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 1.796e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.645496e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.025e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.41e-1

GenotypeDepth
all individuals: 404
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 6.912e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

DP
type: SiteQuality
SIO_000300: 1.643255e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.484e0

GenotypeDepth
all individuals: 404
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.643377e6

FS
type: SiteQuality
SIO_000300: 2.612e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.239e0

QD
type: SiteQuality
SIO_000300: 7.72e0

VQSLOD
type: SiteQuality
SIO_000300: -2.399e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36696
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.218e0

MQRankSum
type: SiteQuality
SIO_000300: -1.917e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.643473e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.827e-1

GenotypeQuality
all individuals: 8448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.643588e6

FS
type: SiteQuality
SIO_000300: 1.745e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.465e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.212e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.297e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.643307e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.751e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.643473e6

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.643452e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 1.226e0

QD
type: SiteQuality
SIO_000300: 1.424e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 1.644045e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.643343e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.122e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.602e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.168e0

QD
type: SiteQuality
SIO_000300: 1.128e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

DP
type: SiteQuality
SIO_000300: 1.643857e6

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 1.64372e6

FS
type: SiteQuality
SIO_000300: 5.747e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.216e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.649e0

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

DP
type: SiteQuality
SIO_000300: 1.643545e6

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.99e-1

GenotypeQuality
all individuals: 8442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

FS
type: SiteQuality
SIO_000300: 3.78e0

DP
type: SiteQuality
SIO_000300: 1.643544e6

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36648
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: -2.833e0

DP
type: SiteQuality
SIO_000300: 1.643504e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.217e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

FS
type: SiteQuality
SIO_000300: 1.5064e1

DP
type: SiteQuality
SIO_000300: 1.643916e6

VQSLOD
type: SiteQuality
SIO_000300: -1.393e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.186e1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994305409860632e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.643983e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

FS
type: SiteQuality
SIO_000300: 1.363e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeDepth
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.917e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.905e1

DP
type: SiteQuality
SIO_000300: 1.64417e6

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeDepth
all individuals: 2970
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8452
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.438e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.615e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

VQSLOD
type: SiteQuality
SIO_000300: -3.063e0

DP
type: SiteQuality
SIO_000300: 1.643921e6

GenotypeDepth
all individuals: 1678
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 1.643816e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 1.487e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 6.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.989e1