17-34499226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499226
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499226
    reference: chr 17
allele count: 6
allele frequency: 6.028454304316373e-5
allele num: 99528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.485G>A
  hgvsp: ENSP00000381781.3:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.485G>A
  hgvsp: ENSP00000390852.2:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.457G>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5329C>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41213
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg162Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-34499227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499227
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499227
    reference: chr 17
allele count: 3
allele frequency: 3.013197806391997e-5
allele num: 99562
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5328G>A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.484C>T
  hgvsp: ENSP00000390852.2:p.Arg162Ter
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.484C>T
  hgvsp: ENSP00000381781.3:p.Arg162Ter
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.456C>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg162Ter
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-34499229-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499229
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499229
    reference: chr 17
allele count: 1
allele frequency: 1.003451874448101e-5
allele num: 99656
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5326T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.454A>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.482A>T
  hgvsp: ENSP00000381781.3:p.Asp161Val
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.482A>T
  hgvsp: ENSP00000390852.2:p.Asp161Val
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41099
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39613
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp161Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-34499236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499236
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499236
    reference: chr 17
allele count: 5
allele frequency: 5.01222984081158e-5
allele num: 99756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.475T>C
  hgvsp: ENSP00000381781.3:p.Phe159Leu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5319A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.475T>C
  hgvsp: ENSP00000390852.2:p.Phe159Leu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.447T>C
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39585
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe159Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

17-34499241-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499241
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499241
    reference: chr 17
allele count: 1
allele frequency: 1.003754040110011e-5
allele num: 99626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.442T>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.470T>A
  hgvsp: ENSP00000390852.2:p.Met157Lys
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5314A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.470T>A
  hgvsp: ENSP00000381781.3:p.Met157Lys
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met157Lys
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

17-34499243-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499243
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499243
    reference: chr 17
allele count: 17
allele frequency: 1.709195471637409e-4
allele num: 99462
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5312A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.468T>C
  hgvsp: ENST00000454519.3:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.468T>C
  hgvsp: ENST00000398801.3:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.440T>C
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37582
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5832
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35531
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8370
  bin: 2.25e1
  variant carriers: 2
hgvs: p.His156His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-34499245-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499245
    reference: chr 17
allele count: 1685
allele frequency: 1.715466688385731e-2
allele num: 98224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.466C>G
  hgvsp: ENSP00000381781.3:p.His156Asp
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.438C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.466C>G
  hgvsp: ENSP00000390852.2:p.His156Asp
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5310G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 2.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34837
  bin: 2.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 2.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 8570
  bin: 2.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 5.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 7.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 46
hgvs: p.His156Asp
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-34499246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499246
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499246
    reference: chr 17
allele count: 1
allele frequency: 1.005813602623162e-5
allele num: 99422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.437G>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.465G>A
  hgvsp: ENST00000398801.3:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.465G>A
  hgvsp: ENST00000454519.3:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5309C>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys155Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-34499247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499247
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499247
    reference: chr 17
allele count: 3220
allele frequency: 3.360537686029764e-2
allele num: 95818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.436A>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.464A>G
  hgvsp: ENSP00000381781.3:p.Lys155Arg
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5308T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.464A>G
  hgvsp: ENSP00000390852.2:p.Lys155Arg
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 29989
  bin: 2.25e1
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 441
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 2.5e0
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 3.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 7.5e0
  variant carriers: 549
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 1.25e1
  variant carriers: 531
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.75e1
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 1.75e1
  variant carriers: 310
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.25e1
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.75e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.25e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 206
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 2.5e0
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 7.5e0
  variant carriers: 248
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.75e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.25e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 8116
  bin: 2.25e1
  variant carriers: 249
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 9.75e1
  variant carriers: 1080
genotype quality: GenotypeQuality
  all individuals: 5382
  bin: 6.75e1
  variant carriers: 147
hgvs: p.Lys155Arg
num of homozygotes: 124
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

17-34499253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499253
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499253
    reference: chr 17
allele count: 5
allele frequency: 5.004904806710576e-5
allele num: 99902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.458T>C
  hgvsp: ENSP00000381781.3:p.Leu153Ser
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.458T>C
  hgvsp: ENSP00000390852.2:p.Leu153Ser
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.430T>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5302A>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4848
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu153Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

17-34499254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499254
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499254
    reference: chr 17
allele count: 3
allele frequency: 3.007518796992481e-5
allele num: 99750
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5301A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.457T>C
  hgvsp: ENST00000398801.3:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.457T>C
  hgvsp: ENST00000454519.3:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.429T>C
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6029
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5056
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu153Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

17-34499256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499256
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499256
    reference: chr 17
allele count: 452
allele frequency: 4.564181274739478e-3
allele num: 99032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5299G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.427C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.455C>T
  hgvsp: ENSP00000381781.3:p.Thr152Ile
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.455C>T
  hgvsp: ENSP00000390852.2:p.Thr152Ile
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 1.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 1.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26675
  bin: 2.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 5501
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 12594
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 5889
  bin: 6.75e1
  variant carriers: 14
hgvs: p.Thr152Ile
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

17-34499260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499260
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499260
    reference: chr 17
allele count: 42
allele frequency: 4.390458071125421e-4
allele num: 95662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.451G>A
  hgvsp: ENSP00000381781.3:p.Gly151Arg
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.451G>A
  hgvsp: ENSP00000390852.2:p.Gly151Arg
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5295C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.423G>A
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21565
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7620
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14793
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.75e1
  variant carriers: 20
hgvs: p.Gly151Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-34499261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499261
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499261
    reference: chr 17
allele count: 12
allele frequency: 1.254757622652558e-4
allele num: 95636
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5294G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.422C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.450C>T
  hgvsp: ENST00000398801.3:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.450C>T
  hgvsp: ENST00000454519.3:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14861
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7671
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser150Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-34499269-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499269
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499269
    reference: chr 17
allele count: 1
allele frequency: 6.858710562414266e-5
allele num: 14580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.442G>T
  hgvsp: ENSP00000390852.2:p.Asp148Tyr
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.442G>T
  hgvsp: ENSP00000381781.3:p.Asp148Tyr
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5286C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.414G>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5337
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp148Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-34499271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499271
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499271
    reference: chr 17
allele count: 9
allele frequency: 1.732101616628176e-3
allele num: 5196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5284C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.440G>A
  hgvsp: ENSP00000390852.2:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.412G>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.440G>A
  hgvsp: ENSP00000381781.3:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg147Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

17-34499272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499272
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499272
    reference: chr 17
allele count: 16
allele frequency: 3.075740099961553e-3
allele num: 5202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.439C>T
  hgvsp: ENSP00000390852.2:p.Arg147Trp
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.439C>T
  hgvsp: ENSP00000381781.3:p.Arg147Trp
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.411C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5283G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6383
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Arg147Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

17-34499273-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499273
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499273
    reference: chr 17
allele count: 3
allele frequency: 5.818463925523662e-4
allele num: 5156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.410C>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.438C>A
  hgvsp: ENSP00000381781.3:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.438C>A
  hgvsp: ENSP00000390852.2:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5282G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp146Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

17-34499275-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499275
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499275
    reference: chr 17
allele count: 2
allele frequency: 3.916960438699569e-4
allele num: 5106
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5280C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.408G>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.436G>C
  hgvsp: ENSP00000390852.2:p.Asp146His
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.436G>C
  hgvsp: ENSP00000381781.3:p.Asp146His
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp146His
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

17-34499275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499275
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499275
    reference: chr 17
allele count: 7
allele frequency: 1.370936153544849e-3
allele num: 5106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.408G>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.436G>A
  hgvsp: ENSP00000390852.2:p.Asp146Asn
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5280C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.436G>A
  hgvsp: ENSP00000381781.3:p.Asp146Asn
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp146Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

17-34499285-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499285
    reference: chr 17
allele count: 2
allele frequency: 8.453085376162299e-4
allele num: 2366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5270G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.398C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.426C>G
  hgvsp: ENSP00000390852.2:p.Ile142Met
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.426C>G
  hgvsp: ENSP00000381781.3:p.Ile142Met
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6869
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile142Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/17-34499342-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499342
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499342
    reference: chr 17
allele count: 10
allele frequency: 5.0e-1
allele num: 20
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.388-19G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5213C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.360-19G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.388-19G>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.5e0
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

17-34499364-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499364
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 10
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.360-41C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5191G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.388-41C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.388-41C>G
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

17-34499368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499368
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 6
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.388-45C>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.388-45C>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.360-45C>A
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-5187G>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

17-34499765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499765
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499765
    reference: chr 17
allele count: 1
allele frequency: 5.0e-1
allele num: 2
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.247C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.40-5C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.40-5C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.280-5C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4790G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.280-5C>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
hgvs: c.280-5C>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

17-34499796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499796
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499796
    reference: chr 17
allele count: 5
allele frequency: 1.785714285714286e-1
allele num: 28
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.280-36C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.40-36C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.216C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.280-36C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4759G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.40-36C>T
  variant of: http://identifiers.org/hgnc/27011
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 5
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

17-34499801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34499801
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34499801
    reference: chr 17
allele count: 1
allele frequency: 2.631578947368421e-2
allele num: 38
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224226
  ensembl transcript: ENST00000588574
  gene symbol: TBC1D3B
  hgvsc: ENST00000588574.1:n.211C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.40-41C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.280-41C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.40-41C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.280-41C>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4754G>A
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-34500158-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500158
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500158
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 26156
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+46G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+46G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+46G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4397C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+46G>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-34500161-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500161
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500161
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25490
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4394T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+43A>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+43A>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+43A>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+43A>C
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17158
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12436
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/17-34500162-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500162
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500162
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 23952
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4393C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+42G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+42G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+42G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+42G>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17164
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19196
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12422
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

17-34500162-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500162
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500162
    reference: chr 17
allele count: 5
allele frequency: 2.0875083500334e-4
allele num: 23952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+42G>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4393C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+42G>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+42G>C
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+42G>C
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12682
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17164
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12422
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-34500167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500167
    reference: chr 17
allele count: 1
allele frequency: 4.220834036805673e-5
allele num: 23692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+37C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4388G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+37C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+37C>G
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+37C>G
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7277
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/17-34500174-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500174
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500174
    reference: chr 17
allele count: 1
allele frequency: 4.434196523589925e-5
allele num: 22552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+30G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+30G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+30G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4381C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+30G>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16267
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14858
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-34500198-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500198
    reference: chr 17
allele count: 1
allele frequency: 5.242189138184106e-5
allele num: 19076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.39+6G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.279+6G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.279+6G>T
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4357C>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.39+6G>T
  variant of: http://identifiers.org/hgnc/27011
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14280
  bin: 2.25e1
  variant carriers: 0
hgvs: c.279+6G>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

17-34500231-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34500231
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34500231
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000466792
  ensembl transcript: ENST00000586369
  gene symbol: TBC1D3B
  hgvsc: ENST00000586369.1:c.12C>A
  hgvsp: ENSP00000466792.1:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000464888
  ensembl transcript: ENST00000589443
  gene symbol: TBC1D3B
  hgvsc: ENST00000589443.1:c.12C>A
  hgvsp: ENSP00000464888.1:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000381781
  ensembl transcript: ENST00000398801
  gene symbol: TBC1D3B
  hgvsc: ENST00000398801.3:c.252C>A
  hgvsp: ENSP00000381781.3:p.Asp84Glu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224226
  ensembl protein: ENSP00000390852
  ensembl transcript: ENST00000454519
  gene symbol: TBC1D3B
  hgvsc: ENST00000454519.3:c.252C>A
  hgvsp: ENSP00000390852.2:p.Asp84Glu
  variant of: http://identifiers.org/hgnc/27011
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267118
  ensembl transcript: ENST00000592460
  gene symbol: CTB-91J4.1
  hgvsc: ENST00000592460.1:n.158-4324G>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp84Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

17-34522643-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34522643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34522643
    reference: chr 17
allele count: 1
allele frequency: 4.642525533890436e-4
allele num: 2154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  hgvsc: ENST00000589736.1:n.300A>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.*42A>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.1083A>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
  hgvsc: ENST00000589380.1:n.160-886T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
  hgvsc: ENST00000592498.1:n.77-911T>G
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

17-34522805-TGGGGAATCCAGCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34522805
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34522792
    reference: chr 17
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: TGGGGAATCCAGCC
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

17-34522966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34522966
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34522966
    reference: chr 17
allele count: 37
allele frequency: 6.498068141903758e-3
allele num: 5694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
  hgvsc: ENST00000592498.1:n.77-588T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.77-206A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.951-191A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
  hgvsc: ENST00000589380.1:n.160-563T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.192-191A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  hgvsc: ENST00000589736.1:n.168-191A>G
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.25e1
  variant carriers: 15
num of homozygotes: 9
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-34522999-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34522999
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34522999
    reference: chr 17
allele count: 14
allele frequency: 2.492877492877493e-3
allele num: 5616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  hgvsc: ENST00000589736.1:n.167+198G>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
  hgvsc: ENST00000592498.1:n.77-555C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.191+198G>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.77-239G>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
  hgvsc: ENST00000589380.1:n.160-530C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.950+198G>C
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9742
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 4
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

17-34523036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523036
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523036
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 5076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.950+161G>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.77-276G>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
  hgvsc: ENST00000589380.1:n.160-493C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
  hgvsc: ENST00000592498.1:n.77-518C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  hgvsc: ENST00000589736.1:n.167+161G>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.191+161G>C
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

17-34523045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523045
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523045
    reference: chr 17
allele count: 1
allele frequency: 3.367003367003367e-4
allele num: 2970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
  hgvsc: ENST00000592498.1:n.77-509C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  hgvsc: ENST00000589736.1:n.167+152G>A
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.191+152G>A
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
  hgvsc: ENST00000589380.1:n.160-484C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.950+152G>A
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.77-285G>A
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

17-34523338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523338
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523338
    reference: chr 17
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.77-27C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.809C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000589736
  gene symbol: CCL3L3
  hgvsc: ENST00000589736.1:n.53-27C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000592498
  gene symbol: AC131056.3
  hgvsc: ENST00000592498.1:n.77-216G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.77-578C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267488
  ensembl transcript: ENST00000589380
  gene symbol: AC131056.3
  hgvsc: ENST00000589380.1:n.160-191G>A
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-34523953-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523953
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523953
    reference: chr 17
allele count: 9
allele frequency: 3.201252045244362e-4
allele num: 28114
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.76+44T>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.194T>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.76+44T>C
  variant of: http://identifiers.org/hgnc/30554
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11574
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 4
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-34523959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523959
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523959
    reference: chr 17
allele count: 9
allele frequency: 3.322504430005907e-4
allele num: 27088
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.76+38T>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.76+38T>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.188T>C
  variant of: http://identifiers.org/hgnc/30554
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ

17-34523965-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523965
    reference: chr 17
allele count: 1
allele frequency: 3.951007506914263e-5
allele num: 25310
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.76+32A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.182A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.76+32A>G
  variant of: http://identifiers.org/hgnc/30554
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-34523966-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523966
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523966
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25016
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.76+31C>A
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.181C>A
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.76+31C>A
  variant of: http://identifiers.org/hgnc/30554
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9673
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/17-34523979-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523979
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523979
    reference: chr 17
allele count: 2
allele frequency: 1.01461038961039e-4
allele num: 19712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.76+18T>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.76+18T>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.168T>G
  variant of: http://identifiers.org/hgnc/30554
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 541
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12876
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 7115
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

17-34523991-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34523991
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34523991
    reference: chr 17
allele count: 17
allele frequency: 1.827171109200344e-3
allele num: 9304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.156T>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.76+6T>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.76+6T>C
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3229
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 278
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
hgvs: c.76+6T>C
num of homozygotes: 3
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

17-34524002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34524002
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34524002
    reference: chr 17
allele count: 7
allele frequency: 8.544921875e-4
allele num: 8192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.71C>T
  hgvsp: ENSP00000367605.3:p.Ala24Val
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.145C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.71C>T
  hgvsp: ENSP00000377994.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14515
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13264
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala24Val
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-34524036-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34524036
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34524036
    reference: chr 17
allele count: 3
allele frequency: 3.707365299060801e-4
allele num: 8092
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.37T>C
  hgvsp: ENSP00000367605.3:p.Cys13Arg
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.37T>C
  hgvsp: ENSP00000377994.1:p.Cys13Arg
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.111T>C
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Cys13Arg
num of homozygotes: 1
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

17-34524068-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34524068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34524068
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 6404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.5A>C
  hgvsp: ENSP00000377994.1:p.Gln2Pro
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.79A>C
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.5A>C
  hgvsp: ENSP00000367605.3:p.Gln2Pro
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Gln2Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

17-34524075-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34524075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34524075
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 5882
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.-3A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.72A>G
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

17-34524105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34524105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34524105
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 3928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.42C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.-33C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10620
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

17-34524124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34524124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34524124
    reference: chr 17
allele count: 3
allele frequency: 9.428032683846638e-4
allele num: 3182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000377994
  ensembl transcript: ENST00000394484
  gene symbol: CCL3L3
  hgvsc: ENST00000394484.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000256515
  ensembl protein: ENSP00000367605
  ensembl transcript: ENST00000378354
  gene symbol: CCL3L3
  hgvsc: ENST00000378354.4:c.-52C>T
  variant of: http://identifiers.org/hgnc/30554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256515
  ensembl transcript: ENST00000588817
  gene symbol: CCL3L3
  hgvsc: ENST00000588817.1:n.23C>T
  variant of: http://identifiers.org/hgnc/30554
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

17-34538532-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34538532
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34538532
    reference: chr 17
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-34539127-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539127
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539127
    reference: chr 17
allele count: 62
allele frequency: 1.341991341991342e-1
allele num: 462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.76+508A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.89+232A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.76+508A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.77-51A>C
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 2.5e0
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 5
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

17-34539187-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539187
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539187
    reference: chr 17
allele count: 87
allele frequency: 8.717434869739479e-2
allele num: 998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.86A>T
  hgvsp: ENSP00000367601.4:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.86A>T
  hgvsp: ENSP00000367603.4:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.86A>T
  hgvsp: ENSP00000405533.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-508A>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-237A>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.86A>T
  hgvsp: ENSP00000468405.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.86A>T
  hgvsp: ENSP00000467085.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.86A>T
  hgvsp: ENSP00000467658.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.86A>T
  hgvsp: ENSP00000465568.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.86A>T
  hgvsp: ENSP00000467722.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.86A>T
  hgvsp: ENSP00000466720.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.76+568A>T
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14167
  bin: 2.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 7.5e0
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Asp29Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-34539234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539234
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539234
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.133C>T
  hgvsp: ENSP00000467722.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.133C>T
  hgvsp: ENSP00000468405.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.133C>T
  hgvsp: ENSP00000466720.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.133C>T
  hgvsp: ENSP00000367603.4:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.133C>T
  hgvsp: ENSP00000367601.4:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.133C>T
  hgvsp: ENSP00000465568.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.133C>T
  hgvsp: ENSP00000467085.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.133C>T
  hgvsp: ENSP00000467658.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-190C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.76+615C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.133C>T
  hgvsp: ENSP00000405533.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-461C>T
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18543
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg45Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS

17-34539235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539235
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539235
    reference: chr 17
allele count: 1045
allele frequency: 3.596008258774948e-1
allele num: 2906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-189G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.76+616G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.134G>A
  hgvsp: ENSP00000467658.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.134G>A
  hgvsp: ENSP00000466720.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.134G>A
  hgvsp: ENSP00000405533.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.134G>A
  hgvsp: ENSP00000468405.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.134G>A
  hgvsp: ENSP00000367601.4:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.134G>A
  hgvsp: ENSP00000467722.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-460G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.134G>A
  hgvsp: ENSP00000467085.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.134G>A
  hgvsp: ENSP00000465568.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.134G>A
  hgvsp: ENSP00000367603.4:p.Arg45His
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 7.5e0
  variant carriers: 1911
genotype depth: GenotypeDepth
  all individuals: 15341
  bin: 2.5e0
  variant carriers: 1057
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 616
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg45His
num of homozygotes: 57
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

17-34539244-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539244
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539244
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-180T>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.143T>C
  hgvsp: ENSP00000466720.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.143T>C
  hgvsp: ENSP00000467722.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.76+625T>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.143T>C
  hgvsp: ENSP00000467085.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.143T>C
  hgvsp: ENSP00000468405.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.143T>C
  hgvsp: ENSP00000367603.4:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.143T>C
  hgvsp: ENSP00000367601.4:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-451T>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.143T>C
  hgvsp: ENSP00000465568.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.143T>C
  hgvsp: ENSP00000405533.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.143T>C
  hgvsp: ENSP00000467658.1:p.Val48Ala
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18953
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val48Ala
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

17-34539248-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539248
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539248
    reference: chr 17
allele count: 1
allele frequency: 4.472271914132379e-4
allele num: 2236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.76+629A>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.147A>G
  hgvsp: ENST00000589336.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.147A>G
  hgvsp: ENST00000591167.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.147A>G
  hgvsp: ENST00000378352.4:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.147A>G
  hgvsp: ENST00000589079.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.147A>G
  hgvsp: ENST00000591637.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-447A>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.147A>G
  hgvsp: ENST00000378350.4:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.147A>G
  hgvsp: ENST00000588929.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.147A>G
  hgvsp: ENST00000586598.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.147A>G
  hgvsp: ENST00000444414.1:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-176A>G
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val49Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-34539263-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539263
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539263
    reference: chr 17
allele count: 29
allele frequency: 1.375711574952562e-2
allele num: 2108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.162C>A
  hgvsp: ENST00000586598.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-636C>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-432C>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-161C>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.162C>A
  hgvsp: ENST00000589336.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.162C>A
  hgvsp: ENST00000588929.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.162C>A
  hgvsp: ENST00000591637.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.162C>A
  hgvsp: ENST00000378350.4:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.162C>A
  hgvsp: ENST00000591167.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.162C>A
  hgvsp: ENST00000589079.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.162C>A
  hgvsp: ENST00000444414.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.162C>A
  hgvsp: ENST00000378352.4:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10631
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17362
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Thr54Thr
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-34539308-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539309
    reference: chr 17
allele count: 2
allele frequency: 7.993605115907274e-4
allele num: 2502
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-385dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*14dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+23dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-114dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-589dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+18dupG
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-34539316-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539316
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539316
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 3666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-379C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+29C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-108C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*20C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-583C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+24C>G
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

17-34539336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539336
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539336
    reference: chr 17
allele count: 1
allele frequency: 1.201923076923077e-4
allele num: 8320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-563C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-88C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-359C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+49C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+44C>T
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-34539380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539380
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539380
    reference: chr 17
allele count: 1
allele frequency: 3.941974140649637e-5
allele num: 25368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+93G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-519G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-44G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*84G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+88G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-315G>A
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

17-34539409-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539409
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539409
    reference: chr 17
allele count: 2
allele frequency: 1.483019427554501e-4
allele num: 13486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-490C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*113C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-15C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+122C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+117C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-286C>G
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-34539411-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539411
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539411
    reference: chr 17
allele count: 1
allele frequency: 7.827175954915466e-5
allele num: 12776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+124T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-13T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*115T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-284T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-488T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+119T>A
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-34539418-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539418
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539418
    reference: chr 17
allele count: 3
allele frequency: 2.934272300469484e-4
allele num: 10224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+131C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*122C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.90-6C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-277C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-481C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+126C>G
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.90-6C>G
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-34539435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539435
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539435
    reference: chr 17
allele count: 4
allele frequency: 7.5046904315197e-4
allele num: 5330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.93+8G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-464G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+148G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-260G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*139G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+143G>A
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.93+8G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-34539465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539465
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539465
    reference: chr 17
allele count: 1
allele frequency: 2.941176470588235e-3
allele num: 340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*169C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.93+38C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-230C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+178C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+173C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-434C>T
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

17-34539535-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539535
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539535
    reference: chr 17
allele count: 19
allele frequency: 2.567567567567567e-1
allele num: 74
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.93+108G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-364G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.192-201G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+248G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+243G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*239G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.192-180G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+243G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.192-170G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.192-231G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.192-160G>C
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-160G>C
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.5e0
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.5e0
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 2
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-34539544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34539544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34539544
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367603
  ensembl transcript: ENST00000378352
  gene symbol: CCL4L1
  hgvsc: ENST00000378352.4:c.186+257C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000468405
  ensembl transcript: ENST00000591637
  gene symbol: CCL4L1
  hgvsc: ENST00000591637.1:c.192-161C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000367601
  ensembl transcript: ENST00000378350
  gene symbol: CCL4L1
  hgvsc: ENST00000378350.4:c.192-192C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000465568
  ensembl transcript: ENST00000588929
  gene symbol: CCL4L1
  hgvsc: ENST00000588929.1:c.191+252C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000373720
  ensembl transcript: ENST00000389068
  gene symbol: CCL4L1
  hgvsc: ENST00000389068.5:c.77-355C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000383538
  ensembl transcript: ENST00000400702
  gene symbol: CCL4L1
  hgvsc: ENST00000400702.4:c.77-151C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000405533
  ensembl transcript: ENST00000444414
  gene symbol: CCL4L1
  hgvsc: ENST00000444414.1:c.191+252C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000351606
  ensembl transcript: ENST00000358756
  gene symbol: CCL4L1
  hgvsc: ENST00000358756.5:c.93+117C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467085
  ensembl transcript: ENST00000591167
  gene symbol: CCL4L1
  hgvsc: ENST00000591167.1:c.192-222C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000466720
  ensembl transcript: ENST00000589079
  gene symbol: CCL4L1
  hgvsc: ENST00000589079.1:c.192-171C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467658
  ensembl transcript: ENST00000586598
  gene symbol: CCL4L1
  hgvsc: ENST00000586598.1:c.*248C>T
  variant of: http://identifiers.org/hgnc/10631
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205020
  ensembl protein: ENSP00000467722
  ensembl transcript: ENST00000589336
  gene symbol: CCL4L1
  hgvsc: ENST00000589336.1:c.192-151C>T
  variant of: http://identifiers.org/hgnc/10631
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.264542235710673e-4
allele num: 7908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.666712889135408e-5
allele num: 57692
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.155013e6

VQSLOD
type: SiteQuality
SIO_000300: -3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 3.357e1

FS
type: SiteQuality
SIO_000300: 2.094e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

GenotypeQuality
all individuals: 39481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.263902932254803e-4
allele num: 7912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.466685155654163e-5
allele num: 57692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7016
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

FS
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 1.155657e6

VQSLOD
type: SiteQuality
SIO_000300: -3.768e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 3.337e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

QD
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.73190162798753e-5
allele num: 57740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10916
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -4.178e0

QD
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 1.155774e6

FS
type: SiteQuality
SIO_000300: 6.49e-1

MQ
type: SiteQuality
SIO_000300: 3.358e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.647704034207102e-4
allele num: 10758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 3.373e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.145697e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.731661702569786e-5
allele num: 57748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.131513e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.874e0

MQ
type: SiteQuality
SIO_000300: 3.329e1

MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

QD
type: SiteQuality
SIO_000300: 7.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.733282490380282e-5
allele num: 57694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.424907381020234e-4
allele num: 7018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.383508577753182e-3
allele num: 10842
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.73e0

QD
type: SiteQuality
SIO_000300: 4.81e0

MQ
type: SiteQuality
SIO_000300: 3.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 1.122442e6

GenotypeQuality
all individuals: 5403
bin: 6.75e1
variant carriers: 58

GenotypeQuality
all individuals: 33258
bin: 6.25e1
variant carriers: 61

GenotypeQuality
all individuals: 1082
bin: 9.75e1
variant carriers: 790

Latino
type: Population
allele count: 72
allele frequency: 6.721433905899925e-3
allele num: 10712
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 3.170979198376458e-3
allele num: 7884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1343
allele frequency: 2.365269461077844e-2
allele num: 56780
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.426126640045636e-4
allele num: 7012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 131
allele frequency: 2.997711670480549e-2
allele num: 4370
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 1.911764705882353e-2
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 100
allele frequency: 9.271277582050807e-3
allele num: 10786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.264902e6

MQ
type: SiteQuality
SIO_000300: 3.358e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

GenotypeQuality
all individuals: 1024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.230201218386561e-5
allele num: 10834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.178306e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 3.367e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
all individuals: 474
bin: 3.75e1
variant carriers: 168

GenotypeQuality
all individuals: 30074
bin: 6.25e1
variant carriers: 157

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 101

Latino
type: Population
allele count: 186
allele frequency: 1.773455377574371e-2
allele num: 10488
num of homozygotes: 2

African
type: Population
allele count: 204
allele frequency: 2.693424874570901e-2
allele num: 7574
num of homozygotes: 3

East Asian
type: Population
allele count: 1352
allele frequency: 2.131819615263324e-1
allele num: 6342
num of homozygotes: 76

European (Non-Finnish)
type: Population
allele count: 1008
allele frequency: 1.794105083297736e-2
allele num: 56184
num of homozygotes: 29

South Asian
type: Population
allele count: 317
allele frequency: 3.06517114678012e-2
allele num: 10342
num of homozygotes: 8

Other
type: Population
allele count: 19
allele frequency: 2.818991097922849e-2
allele num: 674
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 134
allele frequency: 3.179876601803512e-2
allele num: 4214
num of homozygotes: 5

DP
type: SiteQuality
SIO_000300: 1.299491e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.019e0

FS
type: SiteQuality
SIO_000300: 5.658e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 3.26e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.469e-1

MQ
type: SiteQuality
SIO_000300: 3.371e1

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.424501424501425e-3
allele num: 702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.902025744556027e-5
allele num: 57954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.819e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 4.299e0

QD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.189916e6

MQ
type: SiteQuality
SIO_000300: 3.363e1

GenotypeQuality
all individuals: 115
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.796507213363706e-4
allele num: 7902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.206e0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 3.28e0

MQ
type: SiteQuality
SIO_000300: 3.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

DP
type: SiteQuality
SIO_000300: 1.185726e6

FS
type: SiteQuality
SIO_000300: 5.067e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.44e-1

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 27555
bin: 6.25e1
variant carriers: 21

GenotypeQuality
all individuals: 367
bin: 9.75e1
variant carriers: 279

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.03950103950104e-4
allele num: 57720
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.391723881981815e-3
allele num: 10778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

African
type: Population
allele count: 428
allele frequency: 5.53543714433523e-2
allele num: 7732
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.567546880979717e-5
allele num: 10452
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.906976744186046e-3
allele num: 688
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

DP
type: SiteQuality
SIO_000300: 1.185341e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.991e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.38e1

QD
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 796
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 2.071953286871351e-3
allele num: 10618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 2.649708532061473e-3
allele num: 7548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6932
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.162564e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.018e0

QD
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 3.384e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 882
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 5.299417064122947e-4
allele num: 7548
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 8.690614136732329e-4
allele num: 6904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.772421127259837e-5
allele num: 56420
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.529051987767584e-3
allele num: 654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.161512e6

VQSLOD
type: SiteQuality
SIO_000300: -4.098e0

QD
type: SiteQuality
SIO_000300: 3.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQ
type: SiteQuality
SIO_000300: 3.373e1

FS
type: SiteQuality
SIO_000300: 6.896e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.004016064257028e-3
allele num: 996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.634e1

VQSLOD
type: SiteQuality
SIO_000300: -2.663e0

DP
type: SiteQuality
SIO_000300: 1.09893e6

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 3.45e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
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GenotypeQuality
all individuals: 95
bin: 7.75e1
variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.41025641025641e-3
allele num: 312
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South Asian
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allele count: 2
allele frequency: 5.649717514124294e-3
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.54320987654321e-3
allele num: 3240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 286
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.877e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.024e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

DP
type: SiteQuality
SIO_000300: 1.15718e5

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 4.612546125461255e-3
allele num: 3252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
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European (Finnish)
type: Population
allele count: 1
allele frequency: 2.0e-2
allele num: 50
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 50
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DP
type: SiteQuality
SIO_000300: 1.11807e5

MQ
type: SiteQuality
SIO_000300: 3.426e1

VQSLOD
type: SiteQuality
SIO_000300: -2.211e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.78e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.339975093399751e-4
allele num: 3212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.928e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 1.05684e5

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.61e-2

MQ
type: SiteQuality
SIO_000300: 3.421e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 342
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
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Latino
type: Population
allele count: 1
allele frequency: 3.448275862068965e-3
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.134796238244514e-4
allele num: 3190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.54e-2

DP
type: SiteQuality
SIO_000300: 9.6265e4

MQ
type: SiteQuality
SIO_000300: 3.348e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

FS
type: SiteQuality
SIO_000300: 3.391e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.567398119122257e-3
allele num: 3190
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.54e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.804e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

DP
type: SiteQuality
SIO_000300: 9.6265e4

FS
type: SiteQuality
SIO_000300: 3.391e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 3.348e1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
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South Asian
type: Population
allele count: 2
allele frequency: 1.204819277108434e-2
allele num: 166
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.44e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.17e-2

MQ
type: SiteQuality
SIO_000300: 3.442e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.6487e4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 6

GenotypeQuality
all individuals: 3
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variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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Other
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 5.0e-1
allele num: 12
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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European (Finnish)
type: Population
allele count: 4
allele frequency: 5.0e-1
allele num: 8
num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.255e3

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.142e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.64e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6
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East Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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African
type: Population
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allele num: 0
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Other
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allele frequency: NaN
allele num: 0
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Latino
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allele num: 0
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VQSLOD
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DP
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FS
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QD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 0
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Latino
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allele frequency: NaN
allele num: 0
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African
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: NaN
allele num: 0
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European (Finnish)
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MQRankSum
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BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele num: 0
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European (Non-Finnish)
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allele frequency: 5.0e-1
allele num: 2
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East Asian
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allele num: 0
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Other
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allele frequency: NaN
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Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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East Asian
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Other
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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allele num: 14
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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VQSLOD
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1128
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.43e0

InbreedingCoeff
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SIO_000300: -3.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.049e0

MQ
type: SiteQuality
SIO_000300: 3.53e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 3.857e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.334e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.734e0

DP
type: SiteQuality
SIO_000300: 3.78835e5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 3.342e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.984e0

DP
type: SiteQuality
SIO_000300: 3.77947e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 1
allele frequency: 1.497005988023952e-3
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.214919207872676e-4
allele num: 16462
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.012145748987854e-3
allele num: 988
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1090
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.470588235294118e-3
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.984e0

DP
type: SiteQuality
SIO_000300: 3.77947e5

MQ
type: SiteQuality
SIO_000300: 3.342e1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

QD
type: SiteQuality
SIO_000300: 3.54e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 3766
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.01010101010101e-3
allele num: 990
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

QD
type: SiteQuality
SIO_000300: 2.835e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.423e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.64e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.255e0

DP
type: SiteQuality
SIO_000300: 3.56273e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 650
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.39386189258312e-5
allele num: 15640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.339e1

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 3.39303e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: -3.756e0

FS
type: SiteQuality
SIO_000300: 7.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 3.591954022988506e-4
allele num: 2784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 7.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.204e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.37e1

DP
type: SiteQuality
SIO_000300: 2.79637e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 2
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

FS
type: SiteQuality
SIO_000300: 1.0792e1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.030000000000001e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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DP
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SIO_000300: 2.0519e4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 176
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African
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allele count: 1
allele frequency: 1.533742331288344e-3
allele num: 652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: NaN
allele num: 0
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South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
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allele count: 0
allele frequency: NaN
allele num: 0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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QD
type: SiteQuality
SIO_000300: 6.93e0

FS
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Latino
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allele frequency: 4.464285714285714e-3
allele num: 224
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 4.8e-2
allele num: 250
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South Asian
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allele frequency: 3.291639236339697e-3
allele num: 3038
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European (Non-Finnish)
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allele count: 11
allele frequency: 7.452574525745257e-3
allele num: 1476
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Other
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allele num: 42
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 5
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Latino
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allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

South Asian
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allele frequency: 3.3003300330033e-4
allele num: 3030
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East Asian
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allele frequency: 8.403361344537815e-3
allele num: 238
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European (Finnish)
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Other
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allele frequency: 4.545454545454546e-2
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African
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allele frequency: 1.666666666666667e-3
allele num: 600
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European (Non-Finnish)
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allele count: 8
allele frequency: 5.54016620498615e-3
allele num: 1444
num of homozygotes: 3

DP
type: SiteQuality
SIO_000300: 1.11403e5

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.11e1

ClippingRankSum
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QD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
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SIO_000300: -4.68e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

FS
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QD
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InbreedingCoeff
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MQ
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.8867e4

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
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allele frequency: 2.183406113537118e-3
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: NaN
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East Asian
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allele frequency: NaN
allele num: 0
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South Asian
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allele frequency: NaN
allele num: 0
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Latino
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allele count: 0
allele frequency: NaN
allele num: 0
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African
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allele count: 0
allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele frequency: NaN
allele num: 0
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European (Finnish)
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allele frequency: NaN
allele num: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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DP
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MQ
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.346096320670057e-3
allele num: 6686
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

InbreedingCoeff
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SIO_000300: -2.19e-2

MQ
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.853881278538813e-4
allele num: 3504
num of homozygotes: 0

African
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allele frequency: 1.234949058351343e-3
allele num: 6478
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 6352
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
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MQ
type: SiteQuality
SIO_000300: 2.3e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 3274
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.987281399046105e-4
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: -3.9e-2

MQRankSum
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VQSLOD
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DP
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 3.5628e5

InbreedingCoeff
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SIO_000300: -3.81e-2

FS
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SIO_000300: 0.0e0

MQ
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QD
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VQSLOD
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 4.844961240310077e-4
allele num: 4128
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African
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.39e-2

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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ClippingRankSum
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QD
type: SiteQuality
SIO_000300: 1.174e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele frequency: 4.219409282700422e-3
allele num: 474
num of homozygotes: 1

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 5.112474437627812e-3
allele num: 2934
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.86e-1

VQSLOD
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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allele frequency: 4.742547425474255e-3
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European (Non-Finnish)
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

African
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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Latino
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South Asian
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MQ
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DP
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QD
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InbreedingCoeff
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FS
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VQSLOD
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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DP
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InbreedingCoeff
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VQSLOD
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QD
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FS
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MQ
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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African
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Other
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QD
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FS
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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African
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South Asian
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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European (Finnish)
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allele frequency: NaN
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Latino
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele frequency: 5.0e-1
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Other
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South Asian
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allele frequency: 2.285714285714286e-1
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European (Finnish)
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African
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allele frequency: 1.834862385321101e-2
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DP
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MQRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 8.333333333333333e-2
allele num: 12
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 2.197802197802198e-2
allele num: 182
num of homozygotes: 0

Latino
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allele frequency: 3.703703703703703e-2
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num of homozygotes: 0

African
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allele frequency: 2.617801047120419e-3
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Other
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South Asian
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allele frequency: 1.449275362318841e-1
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Other
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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DP
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 1

African
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East Asian
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 5.202312138728323e-1
allele num: 692
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FS
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QD
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
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VQSLOD
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DP
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FS
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.186e0

ReadPosRankSum
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SIO_000300: 2.52e-1

ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 21

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

African
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allele count: 29
allele frequency: 4.915254237288136e-2
allele num: 590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.415458937198068e-3
allele num: 828
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.403e1

VQSLOD
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InbreedingCoeff
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SIO_000300: -9.1e-2

ReadPosRankSum
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FS
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SIO_000300: 6.028e0

ClippingRankSum
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MQRankSum
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BaseQRankSum
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SIO_000300: 2.89e-1

QD
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SIO_000300: 6.38e0

DP
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SIO_000300: 6.9475e4

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.278e1

QD
type: SiteQuality
SIO_000300: 1.707e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -7.95e-2

DP
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VQSLOD
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SIO_000300: -5.2e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 5.656108597285068e-4
allele num: 1768
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.011e0

QD
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ReadPosRankSum
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FS
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DP
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 4.3e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504664459825459e-4
allele num: 6646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.3e1

ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 4.405286343612335e-4
allele num: 4540
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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Other
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
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allele frequency: 4.476275738585497e-4
allele num: 2234
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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DP
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3962
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.85480093676815e-4
allele num: 1708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.46969696969697e-4
allele num: 2112
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.340000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.61716e5

MQ
type: SiteQuality
SIO_000300: 2.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 1.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 513
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.166666666666667e-3
allele num: 960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.261e0

DP
type: SiteQuality
SIO_000300: 8.1479e4

FS
type: SiteQuality
SIO_000300: 4.507e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

QD
type: SiteQuality
SIO_000300: 7.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.620689655172414e-3
allele num: 116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 2.737e1

VQSLOD
type: SiteQuality
SIO_000300: -3.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.5821e4

FS
type: SiteQuality
SIO_000300: 3.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.82e-2

QD
type: SiteQuality
SIO_000300: 8.07e0

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 72

GenotypeQuality
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bin: 1.25e1
variant carriers: 67

GenotypeQuality
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bin: 7.25e1
variant carriers: 8

GenotypeQuality
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bin: 2.25e1
variant carriers: 24

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 4

GenotypeQuality
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bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2000
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variant carriers: 87

GenotypeQuality
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bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 10
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 6.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 3.863636363636364e-1
allele num: 44
num of homozygotes: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.88e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 2.696e1

DP
type: SiteQuality
SIO_000300: 1.067e4

FS
type: SiteQuality
SIO_000300: 2.757e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.204e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.667e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2189
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GenotypeQuality
all individuals: 134
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 1