19-33892751-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892751
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892751
    reference: chr 19
allele count: 1
allele frequency: 8.731489242805253e-6
allele num: 114528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.334T>C
  hgvsp: ENST00000588328.1:c.334T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.276T>C
  hgvsp: ENST00000609145.1:c.276T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.478T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.720T>C
  hgvsp: ENST00000397032.4:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.518T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.1008T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.651T>C
  hgvsp: ENST00000436370.3:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.843T>C
  hgvsp: ENST00000244137.7:c.843T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34033
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr281Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

19-33892752-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892752
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892752
    reference: chr 19
allele count: 1
allele frequency: 8.731336767659129e-6
allele num: 114530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.719A>G
  hgvsp: ENSP00000380226.3:p.Tyr240Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.1007A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.650A>G
  hgvsp: ENSP00000391890.2:p.Tyr217Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.333A>G
  hgvsp: ENSP00000468516.2:p.Tyr112Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.477A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.275A>G
  hgvsp: ENSP00000476514.1:p.Tyr92Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.517A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.842A>G
  hgvsp: ENSP00000244137.5:p.Tyr281Cys
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6042
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr281Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

19-33892753-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892753
    reference: chr 19
allele count: 24
allele frequency: 2.095301286864207e-4
allele num: 114542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.649T>A
  hgvsp: ENSP00000391890.2:p.Tyr217Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.274T>A
  hgvsp: ENSP00000476514.1:p.Tyr92Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.718T>A
  hgvsp: ENSP00000380226.3:p.Tyr240Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.841T>A
  hgvsp: ENSP00000244137.5:p.Tyr281Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.476T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.1006T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.516T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.332T>A
  hgvsp: ENSP00000468516.2:p.Tyr112Asn
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33901
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr281Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-33892759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892759
    reference: chr 19
allele count: 1
allele frequency: 8.741717222931273e-6
allele num: 114394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.1000G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.268G>A
  hgvsp: ENSP00000476514.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.712G>A
  hgvsp: ENSP00000380226.3:p.Gly238Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.510G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.470G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.643G>A
  hgvsp: ENSP00000391890.2:p.Gly215Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.326G>A
  hgvsp: ENSP00000468516.2:p.Gly110Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.835G>A
  hgvsp: ENSP00000244137.5:p.Gly279Ser
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6042
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly279Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

19-33892760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892760
    reference: chr 19
allele count: 60
allele frequency: 5.242097537961523e-4
allele num: 114458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.325C>T
  hgvsp: ENST00000588328.1:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.999C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.509C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.642C>T
  hgvsp: ENST00000436370.3:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.834C>T
  hgvsp: ENST00000244137.7:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.267C>T
  hgvsp: ENST00000609145.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.469C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.711C>T
  hgvsp: ENST00000397032.4:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 33210
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly278Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS

19-33892761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892761
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892761
    reference: chr 19
allele count: 6
allele frequency: 5.240357741755171e-5
allele num: 114496
alternate allele: T
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.833G>A
  hgvsp: ENSP00000244137.5:p.Gly278Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.468G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.508G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.266G>A
  hgvsp: ENSP00000476514.1:p.Gly89Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.710G>A
  hgvsp: ENSP00000380226.3:p.Gly237Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.324G>A
  hgvsp: ENSP00000468516.2:p.Gly109Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.641G>A
  hgvsp: ENSP00000391890.2:p.Gly214Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.998G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33242
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly278Asp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-33892765-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892765
    reference: chr 19
allele count: 1
allele frequency: 8.743704532736431e-6
allele num: 114368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.262A>T
  hgvsp: ENSP00000476514.1:p.Met88Leu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.994A>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.637A>T
  hgvsp: ENSP00000391890.2:p.Met213Leu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.829A>T
  hgvsp: ENSP00000244137.5:p.Met277Leu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.706A>T
  hgvsp: ENSP00000380226.3:p.Met236Leu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.464A>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.320A>T
  hgvsp: ENSP00000468516.2:p.Met108Leu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.504A>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met277Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-33892766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892766
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892766
    reference: chr 19
allele count: 1
allele frequency: 8.749671887304227e-6
allele num: 114290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.705C>T
  hgvsp: ENST00000397032.4:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.463C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.636C>T
  hgvsp: ENST00000436370.3:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.828C>T
  hgvsp: ENST00000244137.7:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.503C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.993C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.261C>T
  hgvsp: ENST00000609145.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.319C>T
  hgvsp: ENST00000588328.1:c.319C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32655
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp276Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

19-33892768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892768
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892768
    reference: chr 19
allele count: 4
allele frequency: 3.505450976268097e-5
allele num: 114108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.259G>A
  hgvsp: ENSP00000476514.1:p.Asp87Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.461G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.703G>A
  hgvsp: ENSP00000380226.3:p.Asp235Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.317G>A
  hgvsp: ENSP00000468516.2:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.634G>A
  hgvsp: ENSP00000391890.2:p.Asp212Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.991G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.501G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.826G>A
  hgvsp: ENSP00000244137.5:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12341
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp276Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-33892768-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892768
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892767
    reference: chr 19
allele count: 3
allele frequency: 2.629088232201073e-5
allele num: 114108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.702delC
  hgvsp: ENSP00000380226.3:p.Phe234LeufsTer46
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.460delC
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.316delC
  hgvsp: ENSP00000468516.2:p.Phe106LeufsTer46
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.500delC
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.825delC
  hgvsp: ENSP00000244137.5:p.Phe275LeufsTer46
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.990delC
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.633delC
  hgvsp: ENSP00000391890.2:p.Phe211LeufsTer46
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.258delC
  hgvsp: ENSP00000476514.1:p.Phe86LeufsTer?
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe275LeufsTer46
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: CG
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-33892775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892775
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892775
    reference: chr 19
allele count: 1
allele frequency: 8.821765058752955e-6
allele num: 113356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819C>T
  hgvsp: ENST00000244137.7:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310C>T
  hgvsp: ENST00000588328.1:c.310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252C>T
  hgvsp: ENST00000609145.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627C>T
  hgvsp: ENST00000436370.3:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696C>T
  hgvsp: ENST00000397032.4:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
hgvs: c.819C>T
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-33892779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892779
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892779
    reference: chr 19
allele count: 3
allele frequency: 2.655337227827934e-5
allele num: 112980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-4G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-4G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
hgvs: c.819-4G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

19-33892780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892780
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892780
    reference: chr 19
allele count: 1
allele frequency: 8.85629771330393e-6
allele num: 112914
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-5C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-5C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
hgvs: c.819-5C>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-33892788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892788
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892788
    reference: chr 19
allele count: 5
allele frequency: 4.463807449201871e-5
allele num: 112012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-13C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-13C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6037
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

19-33892789-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892789
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892789
    reference: chr 19
allele count: 2
allele frequency: 1.790863016887838e-5
allele num: 111678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-14T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-14T>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-33892791-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892791
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892791
    reference: chr 19
allele count: 1
allele frequency: 8.958646885974342e-6
allele num: 111624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-16C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-16C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

19-33892795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892795
    reference: chr 19
allele count: 1
allele frequency: 8.997660608241856e-6
allele num: 111140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-20C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-20C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23113
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9957
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-33892803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892803
    reference: chr 19
allele count: 1
allele frequency: 9.09487776484284e-6
allele num: 109952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-28C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-28C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11619
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

19-33892811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892811
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892811
    reference: chr 19
allele count: 3
allele frequency: 2.762176595156984e-5
allele num: 108610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-36C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-36C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13183
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-33892812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892812
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892812
    reference: chr 19
allele count: 3
allele frequency: 2.760499098236961e-5
allele num: 108676
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-37C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-37C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4889
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-33892819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892819
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892819
    reference: chr 19
allele count: 221
allele frequency: 2.073987875147807e-3
allele num: 106558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-44G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-44G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14321
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 15000
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 12185
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6220
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10584
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-33892820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892820
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892820
    reference: chr 19
allele count: 2
allele frequency: 1.895770535934331e-5
allele num: 105498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-45G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-45G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6045
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-33892823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892823
    reference: chr 19
allele count: 2
allele frequency: 1.898938493382199e-5
allele num: 105322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-48G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-48G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14269
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-33892824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33892824
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33892824
    reference: chr 19
allele count: 1
allele frequency: 9.902166594050777e-6
allele num: 100988
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.819-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.310-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.494-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.252-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.454-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.696-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.627-49G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.984-49G>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14059
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

19-33902538-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902538
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902538
    reference: chr 19
allele count: 1
allele frequency: 1.058985491898761e-5
allele num: 94430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+40C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+40C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-33902539-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902539
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902539
    reference: chr 19
allele count: 2
allele frequency: 2.113092722508664e-5
allele num: 94648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+39G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+39G>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18914
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-33902548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902548
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902548
    reference: chr 19
allele count: 1
allele frequency: 1.037495071898408e-5
allele num: 96386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+30G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+30G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6282
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

19-33902552-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902552
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902552
    reference: chr 19
allele count: 2
allele frequency: 2.054189519525071e-5
allele num: 97362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+26C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+26C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20176
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-33902561-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902561
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902561
    reference: chr 19
allele count: 1
allele frequency: 9.905109055250698e-6
allele num: 100958
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+17G>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+17G>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26910
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6280
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

19-33902563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902563
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902563
    reference: chr 19
allele count: 2
allele frequency: 1.956487713257161e-5
allele num: 102224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+15C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+15C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28789
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-33902566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902566
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902566
    reference: chr 19
allele count: 6
allele frequency: 5.735041101127892e-5
allele num: 104620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+12C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+12C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31596
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8446
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

19-33902572-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902572
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902572
    reference: chr 19
allele count: 1
allele frequency: 9.28298243659723e-6
allele num: 107724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.251+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.983+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.493+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.626+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.818+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.695+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.309+6T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.453+6T>C
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
hgvs: c.818+6T>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-33902582-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902582
    reference: chr 19
allele count: 2
allele frequency: 1.810675744187731e-5
allele num: 110456
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.814A>G
  hgvsp: ENSP00000244137.5:p.Met272Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.489A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.305A>G
  hgvsp: ENSP00000468516.2:p.Met103Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.247A>G
  hgvsp: ENSP00000476514.1:p.Met83Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.979A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.449A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.691A>G
  hgvsp: ENSP00000380226.3:p.Met231Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.622A>G
  hgvsp: ENSP00000391890.2:p.Met208Val
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5576
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met272Val
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

19-33902586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902586
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902586
    reference: chr 19
allele count: 44
allele frequency: 3.95335046451868e-4
allele num: 111298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.485G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.618G>A
  hgvsp: ENST00000436370.3:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.301G>A
  hgvsp: ENST00000588328.1:c.301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.243G>A
  hgvsp: ENST00000609145.1:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.445G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.975G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.810G>A
  hgvsp: ENST00000244137.7:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.687G>A
  hgvsp: ENST00000397032.4:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 36954
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly270Gly
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

19-33902599-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902599
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902599
    reference: chr 19
allele count: 3
allele frequency: 2.655337227827934e-5
allele num: 112980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.288C>G
  hgvsp: ENSP00000468516.2:p.Thr97Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.472C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.605C>G
  hgvsp: ENSP00000391890.2:p.Thr202Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.230C>G
  hgvsp: ENSP00000476514.1:p.Thr77Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.797C>G
  hgvsp: ENSP00000244137.5:p.Thr266Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.674C>G
  hgvsp: ENSP00000380226.3:p.Thr225Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.432C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.962C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41677
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr266Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

19-33902600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902600
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902600
    reference: chr 19
allele count: 6
allele frequency: 5.30307047780665e-5
allele num: 113142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.604A>G
  hgvsp: ENSP00000391890.2:p.Thr202Ala
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.961A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.673A>G
  hgvsp: ENSP00000380226.3:p.Thr225Ala
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.796A>G
  hgvsp: ENSP00000244137.5:p.Thr266Ala
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.287A>G
  hgvsp: ENSP00000468516.2:p.Thr97Ala
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.471A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.229A>G
  hgvsp: ENSP00000476514.1:p.Thr77Ala
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.431A>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr266Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-33902602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902602
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902602
    reference: chr 19
allele count: 23
allele frequency: 2.031335558970554e-4
allele num: 113226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.671G>A
  hgvsp: ENSP00000380226.3:p.Arg224Gln
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.227G>A
  hgvsp: ENSP00000476514.1:p.Arg76Gln
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.794G>A
  hgvsp: ENSP00000244137.5:p.Arg265Gln
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.429G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.602G>A
  hgvsp: ENSP00000391890.2:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.959G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.469G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.285G>A
  hgvsp: ENSP00000468516.2:p.Arg96Gln
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37243
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg265Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-33902603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902603
    reference: chr 19
allele count: 1
allele frequency: 8.823010411152285e-6
allele num: 113340
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.226C>T
  hgvsp: ENSP00000476514.1:p.Arg76Ter
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.601C>T
  hgvsp: ENSP00000391890.2:p.Arg201Ter
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.428C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.793C>T
  hgvsp: ENSP00000244137.5:p.Arg265Ter
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.468C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.958C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.670C>T
  hgvsp: ENSP00000380226.3:p.Arg224Ter
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.284C>T
  hgvsp: ENSP00000468516.2:p.Arg96Ter
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg265Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-33902603-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902603
    reference: chr 19
allele count: 1
allele frequency: 8.823010411152285e-6
allele num: 113340
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.601C>G
  hgvsp: ENSP00000391890.2:p.Arg201Gly
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.958C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.284C>G
  hgvsp: ENSP00000468516.2:p.Arg96Gly
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.793C>G
  hgvsp: ENSP00000244137.5:p.Arg265Gly
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.468C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.226C>G
  hgvsp: ENSP00000476514.1:p.Arg76Gly
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.670C>G
  hgvsp: ENSP00000380226.3:p.Arg224Gly
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.428C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42197
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg265Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-33902606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902606
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902606
    reference: chr 19
allele count: 5
allele frequency: 4.409093314050899e-5
allele num: 113402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.598G>A
  hgvsp: ENSP00000391890.2:p.Asp200Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.955G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.425G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.790G>A
  hgvsp: ENSP00000244137.5:p.Asp264Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.465G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.223G>A
  hgvsp: ENSP00000476514.1:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.281G>A
  hgvsp: ENSP00000468516.2:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.667G>A
  hgvsp: ENSP00000380226.3:p.Asp223Asn
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp264Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-33902607-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902607
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902607
    reference: chr 19
allele count: 1
allele frequency: 8.815388141539872e-6
allele num: 113438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.954C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.597C>A
  hgvsp: ENSP00000391890.2:p.Asn199Lys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.222C>A
  hgvsp: ENSP00000476514.1:p.Asn74Lys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.280C>A
  hgvsp: ENSP00000468516.2:p.Asn94Lys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.424C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.666C>A
  hgvsp: ENSP00000380226.3:p.Asn222Lys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.789C>A
  hgvsp: ENSP00000244137.5:p.Asn263Lys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.464C>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn263Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-33902612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902612
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902612
    reference: chr 19
allele count: 3
allele frequency: 2.652566800473925e-5
allele num: 113098
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.784C>T
  hgvsp: ENSP00000244137.5:p.Pro262Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.217C>T
  hgvsp: ENSP00000476514.1:p.Pro73Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.419C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.949C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.661C>T
  hgvsp: ENSP00000380226.3:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.459C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.592C>T
  hgvsp: ENSP00000391890.2:p.Pro198Ser
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.275C>T
  hgvsp: ENSP00000468516.2:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6279
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro262Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

19-33902617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902617
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902617
    reference: chr 19
allele count: 1
allele frequency: 8.876422446697082e-6
allele num: 112658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.587G>A
  hgvsp: ENSP00000391890.2:p.Gly196Glu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.454G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.270G>A
  hgvsp: ENSP00000468516.2:p.Gly91Glu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.944G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.414G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.779G>A
  hgvsp: ENSP00000244137.5:p.Gly260Glu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.656G>A
  hgvsp: ENSP00000380226.3:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.212G>A
  hgvsp: ENSP00000476514.1:p.Gly71Glu
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6278
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly260Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

19-33902618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902618
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902618
    reference: chr 19
allele count: 2
allele frequency: 1.775820429038216e-5
allele num: 112624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.269G>A
  hgvsp: ENSP00000468516.2:p.Gly91Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.778G>A
  hgvsp: ENSP00000244137.5:p.Gly260Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.211G>A
  hgvsp: ENSP00000476514.1:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.943G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.655G>A
  hgvsp: ENSP00000380226.3:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.586G>A
  hgvsp: ENSP00000391890.2:p.Gly196Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.413G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.453G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35286
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly260Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-33902619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902619
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902619
    reference: chr 19
allele count: 6
allele frequency: 5.325002662501331e-5
allele num: 112676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.942C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.654C>T
  hgvsp: ENST00000397032.4:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.210C>T
  hgvsp: ENST00000609145.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.777C>T
  hgvsp: ENST00000244137.7:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.452C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.585C>T
  hgvsp: ENST00000436370.3:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.412C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.268C>T
  hgvsp: ENST00000588328.1:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35283
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala259Ala
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-33902621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902621
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902621
    reference: chr 19
allele count: 6
allele frequency: 5.335894562723441e-5
allele num: 112446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.208G>A
  hgvsp: ENSP00000476514.1:p.Ala70Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.775G>A
  hgvsp: ENSP00000244137.5:p.Ala259Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.450G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.940G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.583G>A
  hgvsp: ENSP00000391890.2:p.Ala195Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.410G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.652G>A
  hgvsp: ENSP00000380226.3:p.Ala218Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.266G>A
  hgvsp: ENSP00000468516.2:p.Ala90Thr
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34914
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala259Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-33902622-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902622
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902622
    reference: chr 19
allele count: 79
allele frequency: 7.058865577754744e-4
allele num: 111916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.409C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.207C>T
  hgvsp: ENST00000609145.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.582C>T
  hgvsp: ENST00000436370.3:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.651C>T
  hgvsp: ENST00000397032.4:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.774C>T
  hgvsp: ENST00000244137.7:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.939C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.265C>T
  hgvsp: ENST00000588328.1:c.265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.449C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33978
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6311
  bin: 9.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 38831
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His258His
num of homozygotes: 4
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

19-33902624-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902624
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902624
    reference: chr 19
allele count: 1
allele frequency: 8.932878352062602e-6
allele num: 111946
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.772C>G
  hgvsp: ENSP00000244137.5:p.His258Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.263C>G
  hgvsp: ENSP00000468516.2:p.His89Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.447C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.937C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.205C>G
  hgvsp: ENSP00000476514.1:p.His69Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.649C>G
  hgvsp: ENSP00000380226.3:p.His217Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.580C>G
  hgvsp: ENSP00000391890.2:p.His194Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.407C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5990
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His258Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-33902627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902627
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902627
    reference: chr 19
allele count: 5
allele frequency: 4.488813875821453e-5
allele num: 111388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.404G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.769G>A
  hgvsp: ENSP00000244137.5:p.Gly257Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.646G>A
  hgvsp: ENSP00000380226.3:p.Gly216Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.934G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.260G>A
  hgvsp: ENSP00000468516.2:p.Gly88Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.202G>A
  hgvsp: ENSP00000476514.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.577G>A
  hgvsp: ENSP00000391890.2:p.Gly193Arg
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.444G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6281
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly257Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-33902628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902628
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902628
    reference: chr 19
allele count: 1
allele frequency: 8.977627751642906e-6
allele num: 111388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.201C>T
  hgvsp: ENST00000609145.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.645C>T
  hgvsp: ENST00000397032.4:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.259C>T
  hgvsp: ENST00000588328.1:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.576C>T
  hgvsp: ENST00000436370.3:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.768C>T
  hgvsp: ENST00000244137.7:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.403C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.933C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.443C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33162
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr256Tyr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

19-33902629-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902629
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902629
    reference: chr 19
allele count: 1
allele frequency: 9.003169115528666e-6
allele num: 111072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.575A>G
  hgvsp: ENSP00000391890.2:p.Tyr192Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.258A>G
  hgvsp: ENSP00000468516.2:p.Tyr87Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.932A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.402A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.200A>G
  hgvsp: ENSP00000476514.1:p.Tyr67Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.767A>G
  hgvsp: ENSP00000244137.5:p.Tyr256Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.644A>G
  hgvsp: ENSP00000380226.3:p.Tyr215Cys
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.442A>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr256Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-33902634-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902634
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902634
    reference: chr 19
allele count: 1
allele frequency: 9.150972748403155e-6
allele num: 109278
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.762A>G
  hgvsp: ENST00000244137.7:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.253A>G
  hgvsp: ENST00000588328.1:c.253A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.639A>G
  hgvsp: ENST00000397032.4:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.195A>G
  hgvsp: ENST00000609145.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.437A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.927A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.397A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.570A>G
  hgvsp: ENST00000436370.3:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu254Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

19-33902639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902639
    reference: chr 19
allele count: 2
allele frequency: 1.863550809712827e-5
allele num: 107322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.190G>A
  hgvsp: ENSP00000476514.1:p.Val64Met
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.432G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.565G>A
  hgvsp: ENSP00000391890.2:p.Val189Met
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.392G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.634G>A
  hgvsp: ENSP00000380226.3:p.Val212Met
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.757G>A
  hgvsp: ENSP00000244137.5:p.Val253Met
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.248G>A
  hgvsp: ENSP00000468516.2:p.Val84Met
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.922G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val253Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-33902640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902640
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902640
    reference: chr 19
allele count: 4
allele frequency: 3.729186477969831e-5
allele num: 107262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.921C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.564C>T
  hgvsp: ENST00000436370.3:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.431C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.247C>T
  hgvsp: ENST00000588328.1:c.247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.391C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.633C>T
  hgvsp: ENST00000397032.4:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.756C>T
  hgvsp: ENST00000244137.7:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.189C>T
  hgvsp: ENST00000609145.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28555
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6278
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ala252Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

19-33902641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902641
    reference: chr 19
allele count: 2
allele frequency: 1.870732391731363e-5
allele num: 106910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.632C>T
  hgvsp: ENSP00000380226.3:p.Ala211Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.563C>T
  hgvsp: ENSP00000391890.2:p.Ala188Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.246C>T
  hgvsp: ENSP00000468516.2:p.Ala83Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.430C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.390C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.920C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.188C>T
  hgvsp: ENSP00000476514.1:p.Ala63Val
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.755C>T
  hgvsp: ENSP00000244137.5:p.Ala252Val
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala252Val
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-33902643-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902643
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902643
    reference: chr 19
allele count: 1
allele frequency: 9.403268576157072e-6
allele num: 106346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.186A>T
  hgvsp: ENST00000609145.1:c.186A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.244A>T
  hgvsp: ENST00000588328.1:c.244A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.428A>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.388A>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.561A>T
  hgvsp: ENST00000436370.3:c.561A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.753A>T
  hgvsp: ENST00000244137.7:c.753A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.630A>T
  hgvsp: ENST00000397032.4:c.630A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.918A>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32185
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11454
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser251Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

19-33902645-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902645
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902645
    reference: chr 19
allele count: 9
allele frequency: 8.52450321089621e-5
allele num: 105578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.916T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.184T>A
  hgvsp: ENSP00000476514.1:p.Ser62Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.751T>A
  hgvsp: ENSP00000244137.5:p.Ser251Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.426T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.386T>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.559T>A
  hgvsp: ENSP00000391890.2:p.Ser187Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.628T>A
  hgvsp: ENSP00000380226.3:p.Ser210Thr
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.242T>A
  hgvsp: ENSP00000468516.2:p.Ser82Thr
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26587
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser251Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-33902652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902652
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902652
    reference: chr 19
allele count: 1924
allele frequency: 1.866475233309404e-2
allele num: 103082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.552T>C
  hgvsp: ENST00000436370.3:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.621T>C
  hgvsp: ENST00000397032.4:c.621T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.235T>C
  hgvsp: ENST00000588328.1:c.235T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.909T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.379T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.177T>C
  hgvsp: ENST00000609145.1:c.177T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.744T>C
  hgvsp: ENST00000244137.7:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.419T>C
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 1.75e1
  variant carriers: 380
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 2.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 10150
  bin: 1.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 22885
  bin: 2.25e1
  variant carriers: 392
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 9.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26240
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.75e1
  variant carriers: 14
hgvs: p.Gly248Gly
num of homozygotes: 26
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-33902653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902653
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902653
    reference: chr 19
allele count: 2
allele frequency: 1.951143370014829e-5
allele num: 102504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.908G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.743G>A
  hgvsp: ENSP00000244137.5:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.378G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.620G>A
  hgvsp: ENSP00000380226.3:p.Gly207Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.418G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.176G>A
  hgvsp: ENSP00000476514.1:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.234G>A
  hgvsp: ENSP00000468516.2:p.Gly79Asp
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.551G>A
  hgvsp: ENSP00000391890.2:p.Gly184Asp
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22822
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly248Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

19-33902656-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902656
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902657
    reference: chr 19
allele count: 1
allele frequency: 9.963136395337252e-6
allele num: 100370
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-2dupA
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-2dupA
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 6.75e1
  variant carriers: 0
hgvs: c.741-2dupA
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

19-33902672-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902672
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902672
    reference: chr 19
allele count: 1
allele frequency: 1.083470572939239e-5
allele num: 92296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-17C>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-17C>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

19-33902676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902676
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902676
    reference: chr 19
allele count: 1
allele frequency: 1.107910480833149e-5
allele num: 90260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-21C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-21C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

19-33902688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902688
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902688
    reference: chr 19
allele count: 7
allele frequency: 8.452881224943246e-5
allele num: 82812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-33G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-33G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15090
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23942
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3981
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6269
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-33902696-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902696
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902696
    reference: chr 19
allele count: 1
allele frequency: 1.301812122474485e-5
allele num: 76816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-41A>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-41A>C
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6264
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-33902700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902700
    reference: chr 19
allele count: 1
allele frequency: 1.361470388019061e-5
allele num: 73450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-45C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-45C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6264
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3935
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19023
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

19-33902703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33902703
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33902703
    reference: chr 19
allele count: 3
allele frequency: 4.282532975503912e-5
allele num: 70052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.549-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.906-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.376-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.232-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.416-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.741-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.618-48C>T
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.174-48C>T
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20512
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19162
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4300
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-33904430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33904430
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33904430
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 20190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.905+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.617+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.375+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.173+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.231+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.740+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.415+51G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.548+51G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34374
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11126
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

19-33904433-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33904433
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33904433
    reference: chr 19
allele count: 1
allele frequency: 4.962286621675268e-5
allele num: 20152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.375+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.740+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.548+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.617+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.905+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.415+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.173+48T>C
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.231+48T>C
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

19-33904436-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33904436
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33904436
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 20188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.617+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.905+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.173+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.415+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.375+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.740+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.231+45A>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.548+45A>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4616
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6098
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

19-33904441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33904441
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33904441
    reference: chr 19
allele count: 2
allele frequency: 9.900990099009902e-5
allele num: 20200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.375+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.905+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.173+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.231+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.740+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.548+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.415+40G>A
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.617+40G>A
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34007
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5623
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-33904447-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33904447
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 33904447
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 20324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000244137
  ensembl transcript: ENST00000244137
  gene symbol: PEPD
  hgvsc: ENST00000244137.7:c.740+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000593163
  gene symbol: PEPD
  hgvsc: ENST00000593163.1:n.905+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000468516
  ensembl transcript: ENST00000588328
  gene symbol: PEPD
  hgvsc: ENST00000588328.1:c.231+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000590731
  gene symbol: PEPD
  hgvsc: ENST00000590731.1:n.415+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl transcript: ENST00000588719
  gene symbol: PEPD
  hgvsc: ENST00000588719.1:n.375+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000476514
  ensembl transcript: ENST00000609145
  gene symbol: PEPD
  hgvsc: ENST00000609145.1:c.173+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000380226
  ensembl transcript: ENST00000397032
  gene symbol: PEPD
  hgvsc: ENST00000397032.4:c.617+34C>G
  variant of: http://identifiers.org/hgnc/8840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124299
  ensembl protein: ENSP00000391890
  ensembl transcript: ENST00000436370
  gene symbol: PEPD
  hgvsc: ENST00000436370.3:c.548+34C>G
  variant of: http://identifiers.org/hgnc/8840
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13452
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579080343607883e-5
allele num: 63328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

DP
type: SiteQuality
SIO_000300: 1.688478e6

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.311537490532694e-5
allele num: 15844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

InbreedingCoeff
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SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

DP
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SIO_000300: 1.688328e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.86e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.789194480406707e-4
allele num: 63338
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.299e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63262
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.190759704691593e-4
allele num: 8398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15836
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.1384e1

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.212e0

DP
type: SiteQuality
SIO_000300: 1.686583e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.743375174337517e-4
allele num: 5736
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.160507052312087e-3
allele num: 11202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.094331363536879e-4
allele num: 9138
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189909566872918e-4
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 6.7921905604347e-4
allele num: 63308
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.182e0

DP
type: SiteQuality
SIO_000300: 1.689358e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 1.743e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.475379804807176e-5
allele num: 63322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.182e1

DP
type: SiteQuality
SIO_000300: 1.686929e6

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
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SIO_000300: -1.904e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580827721394922e-5
allele num: 63258
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.136e0

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.22e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.682527e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582228410493339e-5
allele num: 63202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

QD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.681063e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.75561797752809e-4
allele num: 5696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.169773044250032e-5
allele num: 63096
num of homozygotes: 0

East Asian
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allele count: 0
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African
type: Population
allele count: 1
allele frequency: 1.098659635245001e-4
allele num: 9102
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.677295e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.894896412329459e-4
allele num: 15832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 338
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GenotypeQuality
all individuals: 1060
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 537
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6039
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.984725965858041e-5
allele num: 11130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 1.592e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

FS
type: SiteQuality
SIO_000300: 6.625e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.652546e6

VQSLOD
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.356e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.116569897275569e-4
allele num: 8956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.802126509280952e-4
allele num: 11098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.017e1

VQSLOD
type: SiteQuality
SIO_000300: -9.349e-1

FS
type: SiteQuality
SIO_000300: 2.189e0

DP
type: SiteQuality
SIO_000300: 1.645574e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11681929863748e-4
allele num: 8954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.398e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

DP
type: SiteQuality
SIO_000300: 1.641616e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.206772703950744e-4
allele num: 15592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.855e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 1.602475e6

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1063
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GenotypeQuality
all individuals: 326
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.231957596716331e-5
allele num: 61882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.038e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 4.171e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.974e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

QD
type: SiteQuality
SIO_000300: 5.97e0

DP
type: SiteQuality
SIO_000300: 1.58144e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.135073779795687e-4
allele num: 8810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.580976e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.782e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.451612903225807e-5
allele num: 15500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 1.554706e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.249e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.407e0

QD
type: SiteQuality
SIO_000300: 7.12e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.643007360672976e-5
allele num: 60864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

QD
type: SiteQuality
SIO_000300: 1.44e1

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

DP
type: SiteQuality
SIO_000300: 1.486856e6

FS
type: SiteQuality
SIO_000300: 1.803e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 152
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60176
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.545261167572678e-4
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.985e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

DP
type: SiteQuality
SIO_000300: 1.427076e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 2.896e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1745
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60224
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.543586109142452e-4
allele num: 8466
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.499e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.425868e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 1452
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 862
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11760
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5265
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 280
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 4

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6241
bin: 9.75e1
variant carriers: 216

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15036
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.638522427440633e-3
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

African
type: Population
allele count: 188
allele frequency: 2.273276904474002e-2
allele num: 8270
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.512001512001512e-3
allele num: 10582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.53729828478636e-4
allele num: 59118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 1.392905e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

GenotypeQuality
all individuals: 2711
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.697026520225021e-5
allele num: 14932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.709226404129491e-5
allele num: 58506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.268e0

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

DP
type: SiteQuality
SIO_000300: 1.38879e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6045
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.423250718882651e-5
allele num: 58424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10448
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 9.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 1.385719e6

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

FS
type: SiteQuality
SIO_000300: 1.684e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
all individuals: 4309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8828
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 6830
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variant carriers: 0

GenotypeQuality
all individuals: 3827
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1224
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variant carriers: 0

GenotypeQuality
all individuals: 6043
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.780753614929838e-5
allele num: 56156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14458
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.923e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.796e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.388944e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.7e0

GenotypeQuality
all individuals: 8188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
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variant carriers: 0

GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
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variant carriers: 0

GenotypeQuality
all individuals: 4811
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.904979616718101e-5
allele num: 52494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 2.171e0

QD
type: SiteQuality
SIO_000300: 1.619e1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 1.279917e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

GenotypeQuality
all individuals: 869
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 273
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2566
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GenotypeQuality
all individuals: 11762
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.800691725894113e-5
allele num: 52622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.458e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.285201e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.192e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 17708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1567
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6918
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
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variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.274843590862796e-5
allele num: 13746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.523e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.346081e6

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.5e0
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GenotypeQuality
all individuals: 6281
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1138
bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54192
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.141327623126338e-4
allele num: 9340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13822
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.377022e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.636e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10139
bin: 2.25e1
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GenotypeQuality
all individuals: 226
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
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GenotypeQuality
all individuals: 2121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 409
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GenotypeQuality
all individuals: 28020
bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.777840989901863e-5
allele num: 56248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.882e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.754816972589759e-5
allele num: 56986
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.328021248339973e-4
allele num: 7530
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14190
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5010
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8022
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58290
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 4.158580537843083e-4
allele num: 14428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 2.723e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8270
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South Asian
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allele count: 1
allele frequency: 6.79532481652623e-5
allele num: 14716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.348e1

FS
type: SiteQuality
SIO_000300: 8.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.578849e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10706
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.6220600162206e-5
allele num: 61650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 1.617258e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.055e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 9.278159213212098e-5
allele num: 10778
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5642
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African
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allele count: 43
allele frequency: 5.015162118031258e-3
allele num: 8574
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 808
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.763114441762987e-5
allele num: 62984
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10892
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
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ClippingRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 9.512334326843808e-5
allele num: 63076
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European (Finnish)
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African
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Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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allele count: 19
allele frequency: 2.169445078785111e-3
allele num: 8758
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584384308257811e-5
allele num: 63116
num of homozygotes: 0

Other
type: Population
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allele num: 810
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Latino
type: Population
allele count: 3
allele frequency: 2.745744096650192e-4
allele num: 10926
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583029919265474e-5
allele num: 63170
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 5.809e1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

FS
type: SiteQuality
SIO_000300: 2.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.660339e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583029919265474e-5
allele num: 63170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.660339e6

FS
type: SiteQuality
SIO_000300: 2.239e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 5.809e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.469142191745374e-5
allele num: 15458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.748037477842492e-5
allele num: 63184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.13947128532361e-4
allele num: 8776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

FS
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.661183e6

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581527755812114e-5
allele num: 63230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.852e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

QD
type: SiteQuality
SIO_000300: 1.787e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

FS
type: SiteQuality
SIO_000300: 4.035e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 1.661767e6

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.751283932501834e-4
allele num: 10904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

FS
type: SiteQuality
SIO_000300: 8.422000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.656565e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.084e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591140529531568e-5
allele num: 62848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.625e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.650866e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.147842056932966e-4
allele num: 8712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15358
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.206407659731172e-5
allele num: 10862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.891e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.652102e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

FS
type: SiteQuality
SIO_000300: 3.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.647e0

QD
type: SiteQuality
SIO_000300: 7.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.205109664979513e-4
allele num: 8298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.95393083261748e-5
allele num: 62862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.653259e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593625498007968e-5
allele num: 62750
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.225092250922509e-5
allele num: 10840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.604051565377532e-4
allele num: 8688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15344
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.650395e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 549
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 79
allele frequency: 5.170833878779945e-3
allele num: 15278
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62492
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.649182e6

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.599590504830763e-5
allele num: 62516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.004e1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
SIO_000300: 1.644405e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.821135859608524e-5
allele num: 62226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.315270288044193e-4
allele num: 15206
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
SIO_000300: 4.074e0

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.255e0

DP
type: SiteQuality
SIO_000300: 1.637955e6

QD
type: SiteQuality
SIO_000300: 2.455e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607200257152041e-5
allele num: 62220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.901e-1

DP
type: SiteQuality
SIO_000300: 1.63872e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6278
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

QD
type: SiteQuality
SIO_000300: 1.498e1

VQSLOD
type: SiteQuality
SIO_000300: -4.123e-1

DP
type: SiteQuality
SIO_000300: 1.631328e6

FS
type: SiteQuality
SIO_000300: 1.0041e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637411579774692e-5
allele num: 61072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.602208e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.345e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.331334532613765e-5
allele num: 60036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.16e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.568852e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.0e-5
allele num: 60000
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5414
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.291989664082687e-3
allele num: 774
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 5.206e0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.568739e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Other
type: Population
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5390
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.342916360232667e-5
allele num: 59828
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.562628e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

GenotypeQuality
all individuals: 2142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6275
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.859988168014199e-5
allele num: 10142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 4.027e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.885e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.549566e6

QD
type: SiteQuality
SIO_000300: 2.118e1

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12306
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6282
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.522739577693557e-4
allele num: 59104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.086e0

DP
type: SiteQuality
SIO_000300: 1.533974e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 1.172e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
all individuals: 760
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1769
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 466
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 14707
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 973
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1031
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7881
bin: 9.75e1
variant carriers: 1825

South Asian
type: Population
allele count: 231
allele frequency: 1.615836597649692e-2
allele num: 14296
num of homozygotes: 4

Other
type: Population
allele count: 16
allele frequency: 2.21606648199446e-2
allele num: 722
num of homozygotes: 0

Latino
type: Population
allele count: 63
allele frequency: 6.436452799346138e-3
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 377
allele frequency: 7.263969171483622e-2
allele num: 5190
num of homozygotes: 13

East Asian
type: Population
allele count: 1
allele frequency: 1.345532831001076e-4
allele num: 7432
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 3.279515640766902e-3
allele num: 7928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1210
allele frequency: 2.096109205557288e-2
allele num: 57726
num of homozygotes: 9

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

QD
type: SiteQuality
SIO_000300: 1.249e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 1.538435e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15440
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6265
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2082
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27866
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7418
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.050861361771944e-4
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
SIO_000300: 1.50005e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.561e0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

GenotypeQuality
all individuals: 2652
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17972
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.780056249777493e-5
allele num: 56178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

DP
type: SiteQuality
SIO_000300: 1.45334e6

GenotypeQuality
all individuals: 1828
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.506024096385542e-3
allele num: 664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: -2.398e0

DP
type: SiteQuality
SIO_000300: 1.286105e6

MQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

QD
type: SiteQuality
SIO_000300: 5.86e0

FS
type: SiteQuality
SIO_000300: 8.359999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

GenotypeQuality
all individuals: 301
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.98019801980198e-5
allele num: 50500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.247762e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.47e-1

QD
type: SiteQuality
SIO_000300: 1.555e1

FS
type: SiteQuality
SIO_000300: 9.144e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 5.761e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.91e-1

GenotypeQuality
all individuals: 24478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.797697105389413e-4
allele num: 12506
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.639344262295082e-3
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

DP
type: SiteQuality
SIO_000300: 1.160216e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 4.532e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 965
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4967
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.324500232450023e-5
allele num: 43020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

FS
type: SiteQuality
SIO_000300: 4.393e0

QD
type: SiteQuality
SIO_000300: 1.726e1

DP
type: SiteQuality
SIO_000300: 1.126332e6

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: -4.186e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.535336292249915e-5
allele num: 11716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

DP
type: SiteQuality
SIO_000300: 1.115762e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.547e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.138e0

QD
type: SiteQuality
SIO_000300: 1.362e1

FS
type: SiteQuality
SIO_000300: 7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 5126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6267
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16324
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6217
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.775568181818182e-4
allele num: 5632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.219575016097875e-4
allele num: 3106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.553104575163399e-5
allele num: 39168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.108497e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

GenotypeQuality
all individuals: 550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5576
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variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.38e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.142e0

DP
type: SiteQuality
SIO_000300: 4.82306e5

GenotypeQuality
all individuals: 657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.152073732718894e-4
allele num: 8680
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.279999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.84558e5

QD
type: SiteQuality
SIO_000300: 1.139e1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
all individuals: 3972
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 338
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2547
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 659
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variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 4.88547e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.935e0

QD
type: SiteQuality
SIO_000300: 1.806e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 27215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
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variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.29147571035747e-4
allele num: 8728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.588e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 4.9619e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1