17-34151051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151051
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151051
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-31T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-31T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-31T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-31T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5984A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-31T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-31T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-31T>C
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10055
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

17-34151053-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151053
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151053
    reference: chr 17
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-29A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-29A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-29A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-29A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-29A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5982T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-29A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-29A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-34151053-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151053
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151053
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5982T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-29A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-29A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-29A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-29A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-29A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-29A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-29A>T
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-34151054-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151054
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151054
    reference: chr 17
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5981A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-28T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-28T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-28T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-28T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-28T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-28T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-28T>C
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-34151071-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151071
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151072
    reference: chr 17
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-5dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-5dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-5dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5963dupA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-5dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-5dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-5dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-5dupT
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12996
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-34151071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151071
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151071
    reference: chr 17
allele count: 9
allele frequency: 7.413753336189001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-11C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5964G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12996
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-34151078-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151078
    reference: chr 17
allele count: 171
allele frequency: 1.408589927346414e-3
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.549-4G>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5957C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.742-4G>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.476-4G>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.485-4G>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.212-4G>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.212-4G>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.476-4G>C
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: c.485-4G>C
num of homozygotes: 2
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-34151088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151088
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151088
    reference: chr 17
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.482G>A
  hgvsp: ENSP00000309558.3:p.Arg161His
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.218G>A
  hgvsp: ENSP00000466955.1:p.Arg73His
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.748G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.218G>A
  hgvsp: ENSP00000467528.1:p.Arg73His
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.491G>A
  hgvsp: ENSP00000466950.1:p.Arg164His
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.482G>A
  hgvsp: ENSP00000465961.1:p.Arg161His
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.555G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5947C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg164His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-34151104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151104
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.498G>A
  hgvsp: ENST00000311979.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.507G>A
  hgvsp: ENST00000588240.1:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.571G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.764G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.234G>A
  hgvsp: ENST00000592237.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.234G>A
  hgvsp: ENST00000590051.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5931C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.498G>A
  hgvsp: ENST00000590273.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg169Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

17-34151105-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151106
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.500dupA
  hgvsp: ENSP00000309558.3:p.Tyr167Ter
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.236dupA
  hgvsp: ENSP00000467528.1:p.Tyr79Ter
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591957
  gene symbol: TAF15
  hgvsc: ENST00000591957.1:n.766dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.500dupA
  hgvsp: ENSP00000465961.1:p.Tyr167Ter
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.573dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.509dupA
  hgvsp: ENSP00000466950.1:p.Tyr170Ter
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5929dupT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.236dupA
  hgvsp: ENSP00000466955.1:p.Tyr79Ter
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25033
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr170Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-34151127-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151127
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151127
    reference: chr 17
allele count: 67
allele frequency: 5.518672882724083e-4
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.257A>G
  hgvsp: ENSP00000467528.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.257A>G
  hgvsp: ENSP00000466955.1:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.530A>G
  hgvsp: ENSP00000466950.1:p.Tyr177Cys
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.521A>G
  hgvsp: ENSP00000309558.3:p.Tyr174Cys
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.594A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.521A>G
  hgvsp: ENSP00000465961.1:p.Tyr174Cys
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5908T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr177Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

17-34151132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151132
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151132
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.262G>A
  hgvsp: ENSP00000466955.1:p.Gly88Arg
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.599G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5903C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.526G>A
  hgvsp: ENSP00000309558.3:p.Gly176Arg
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.526G>A
  hgvsp: ENSP00000465961.1:p.Gly176Arg
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.262G>A
  hgvsp: ENSP00000467528.1:p.Gly88Arg
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.535G>A
  hgvsp: ENSP00000466950.1:p.Gly179Arg
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly179Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-34151133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151133
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151133
    reference: chr 17
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.527G>A
  hgvsp: ENSP00000309558.3:p.Gly176Glu
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.536G>A
  hgvsp: ENSP00000466950.1:p.Gly179Glu
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5902C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.263G>A
  hgvsp: ENSP00000466955.1:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.600G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.263G>A
  hgvsp: ENSP00000467528.1:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.527G>A
  hgvsp: ENSP00000465961.1:p.Gly176Glu
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly179Glu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-34151135-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151135
    reference: chr 17
allele count: 185
allele frequency: 1.695878556761514e-3
allele num: 109088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.265T>G
  hgvsp: ENSP00000467528.1:p.Ser89Ala
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.529T>G
  hgvsp: ENSP00000465961.1:p.Ser177Ala
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5900A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.602T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.529T>G
  hgvsp: ENSP00000309558.3:p.Ser177Ala
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.538T>G
  hgvsp: ENSP00000466950.1:p.Ser180Ala
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.265T>G
  hgvsp: ENSP00000466955.1:p.Ser89Ala
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 4.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24153
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 1.75e1
  variant carriers: 12
hgvs: p.Ser180Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-34151143-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151143
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151144
    reference: chr 17
allele count: 1
allele frequency: 8.352125615969264e-6
allele num: 119730
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.548dupG
  hgvsp: ENSP00000466950.1:p.Gly184ArgfsTer2
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.612dupG
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.275dupG
  hgvsp: ENSP00000467528.1:p.Gly93ArgfsTer2
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5891dupC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.275dupG
  hgvsp: ENSP00000466955.1:p.Gly93ArgfsTer2
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.539dupG
  hgvsp: ENSP00000465961.1:p.Gly181ArgfsTer2
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.539dupG
  hgvsp: ENSP00000309558.3:p.Gly181ArgfsTer2
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4718
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly184ArgfsTer2
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-34151143-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151143
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151143
    reference: chr 17
allele count: 105
allele frequency: 8.769731896767727e-4
allele num: 119730
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5892T>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.546A>G
  hgvsp: ENST00000588240.1:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.537A>G
  hgvsp: ENST00000590273.1:c.537A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.273A>G
  hgvsp: ENST00000592237.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.610A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.537A>G
  hgvsp: ENST00000311979.3:c.537A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.273A>G
  hgvsp: ENST00000590051.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 3
hgvs: p.Gly182Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-34151146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151146
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151146
    reference: chr 17
allele count: 92
allele frequency: 7.665261368749063e-4
allele num: 120022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.276A>G
  hgvsp: ENST00000590051.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.549A>G
  hgvsp: ENST00000588240.1:c.549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5889T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.613A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.540A>G
  hgvsp: ENST00000590273.1:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.276A>G
  hgvsp: ENST00000592237.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.540A>G
  hgvsp: ENST00000311979.3:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly183Gly
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

17-34151149-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151149
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151149
    reference: chr 17
allele count: 85
allele frequency: 7.240204429301533e-4
allele num: 117400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.279T>G
  hgvsp: ENST00000590051.1:c.279T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.543T>G
  hgvsp: ENST00000590273.1:c.543T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5886A>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.543T>G
  hgvsp: ENST00000311979.3:c.543T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.279T>G
  hgvsp: ENST00000592237.1:c.279T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.616T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.552T>G
  hgvsp: ENST00000588240.1:c.552T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 9.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Gly184Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

17-34151150-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151150
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151150
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.553A>G
  hgvsp: ENSP00000466950.1:p.Arg185Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.544A>G
  hgvsp: ENSP00000465961.1:p.Arg182Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5885T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.617A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.280A>G
  hgvsp: ENSP00000466955.1:p.Arg94Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.544A>G
  hgvsp: ENSP00000309558.3:p.Arg182Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.280A>G
  hgvsp: ENSP00000467528.1:p.Arg94Gly
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg185Gly
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS

17-34151156-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151156
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151156
    reference: chr 17
allele count: 13
allele frequency: 1.071899736147757e-4
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.286C>G
  hgvsp: ENSP00000467528.1:p.Arg96Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.559C>G
  hgvsp: ENSP00000466950.1:p.Arg187Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5879G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.550C>G
  hgvsp: ENSP00000309558.3:p.Arg184Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.286C>G
  hgvsp: ENSP00000466955.1:p.Arg96Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.623C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.550C>G
  hgvsp: ENSP00000465961.1:p.Arg184Gly
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34752
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg187Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-34151158-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151158
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151158
    reference: chr 17
allele count: 16
allele frequency: 1.321178491214163e-4
allele num: 121104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.552T>G
  hgvsp: ENST00000590273.1:c.552T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.561T>G
  hgvsp: ENST00000588240.1:c.561T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.288T>G
  hgvsp: ENST00000590051.1:c.288T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5877A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.625T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.288T>G
  hgvsp: ENST00000592237.1:c.288T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.552T>G
  hgvsp: ENST00000311979.3:c.552T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg187Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-34151164-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151164
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151164
    reference: chr 17
allele count: 14
allele frequency: 1.160958620117754e-4
allele num: 120590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.294A>G
  hgvsp: ENST00000590051.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.567A>G
  hgvsp: ENST00000588240.1:c.567A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.631A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.558A>G
  hgvsp: ENST00000590273.1:c.558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.294A>G
  hgvsp: ENST00000592237.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.558A>G
  hgvsp: ENST00000311979.3:c.558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5871T>C
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly189Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-34151188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151188
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151188
    reference: chr 17
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.582T>C
  hgvsp: ENST00000590273.1:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.318T>C
  hgvsp: ENST00000592237.1:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.318T>C
  hgvsp: ENST00000590051.1:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5847A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.591T>C
  hgvsp: ENST00000588240.1:c.591T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.655T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.582T>C
  hgvsp: ENST00000311979.3:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro197Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

17-34151189-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151189
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.592A>G
  hgvsp: ENSP00000466950.1:p.Met198Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.656A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5846T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.319A>G
  hgvsp: ENSP00000467528.1:p.Met107Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.583A>G
  hgvsp: ENSP00000465961.1:p.Met195Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.319A>G
  hgvsp: ENSP00000466955.1:p.Met107Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.583A>G
  hgvsp: ENSP00000309558.3:p.Met195Val
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met198Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-34151202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151202
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151202
    reference: chr 17
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.669G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596G>A
  hgvsp: ENSP00000309558.3:p.Ser199Asn
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605G>A
  hgvsp: ENSP00000466950.1:p.Ser202Asn
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5833C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332G>A
  hgvsp: ENSP00000467528.1:p.Ser111Asn
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596G>A
  hgvsp: ENSP00000465961.1:p.Ser199Asn
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332G>A
  hgvsp: ENSP00000466955.1:p.Arg111Lys
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser202Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

17-34151206-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151206
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151206
    reference: chr 17
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.673A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+4A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+4A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+4A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+4A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+4A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5829T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.605+4A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-34151212-TAGATAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151212
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151206
    reference: chr 17
allele count: 6
allele frequency: 4.94641384995878e-5
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+15_332+20delAAAGAT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+15_605+20delAAAGAT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.684_689delAAAGAT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+15_596+20delAAAGAT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+15_596+20delAAAGAT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+15_332+20delAAAGAT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14291
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: TAGATAA
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-34151217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151217
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151217
    reference: chr 17
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.684A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+15A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5818T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+15A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+15A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+15A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+15A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12301
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-34151223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151223
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151223
    reference: chr 17
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+21G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.690G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+21G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+21G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+21G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+21G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5812C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-34151224-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151224
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151224
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+22C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5811G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+22C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+22C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+22C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.691C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+22C>A
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-34151224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151224
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151224
    reference: chr 17
allele count: 2
allele frequency: 1.650846058605035e-5
allele num: 121150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+22C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+22C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+22C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5811G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.691C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+22C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+22C>T
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-34151225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151225
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151225
    reference: chr 17
allele count: 2
allele frequency: 1.650709805216243e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5810C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.692G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+23G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+23G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+23G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+23G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+23G>A
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-34151230-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151230
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151227
    reference: chr 17
allele count: 111
allele frequency: 9.180382102390208e-4
allele num: 120910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+38_596+40delTTC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.707_709delTTC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+38_332+40delTTC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5802_263+5804delGAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+38_596+40delTTC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+38_605+40delTTC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+38_332+40delTTC
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: TTTC
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

17-34151233-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151233
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151232
    reference: chr 17
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+33delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+33delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+33delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+33delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.702delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5801delA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+33delT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: CT
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-34151235-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151235
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151235
    reference: chr 17
allele count: 6
allele frequency: 5.020248334950969e-5
allele num: 119516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+33T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+33T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+33T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5800A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.702T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+33T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+33T>A
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-34151237-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151237
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151237
    reference: chr 17
allele count: 1
allele frequency: 8.418500496691529e-6
allele num: 118786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+35T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+35T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5798A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+35T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+35T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.704T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+35T>A
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-34151237-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151237
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151237
    reference: chr 17
allele count: 1
allele frequency: 8.418500496691529e-6
allele num: 118786
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5798A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+35T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+35T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+35T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+35T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.704T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+35T>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

17-34151240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151240
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151240
    reference: chr 17
allele count: 14
allele frequency: 1.206064782908339e-4
allele num: 116080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+38T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5795A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+38T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+38T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+38T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+38T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.707T>C
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

17-34151244-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151244
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151244
    reference: chr 17
allele count: 1
allele frequency: 9.08859563020322e-6
allele num: 110028
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+42T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+42T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+42T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+42T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5791A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+42T>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.711T>A
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6867
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-34151245-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151246
    reference: chr 17
allele count: 16101
allele frequency: 2.225554971940397e-1
allele num: 72346
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+57dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+57dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.726dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5789dupA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+57dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+57dupT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 814
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 1588
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 1.75e1
  variant carriers: 5502
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 2248
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 5547
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 3449
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 560
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 898
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 827
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 919
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 1.25e1
  variant carriers: 657
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 756
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 857
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 582
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 3.25e1
  variant carriers: 853
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 690
num of homozygotes: 154
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-34151245-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151244
    reference: chr 17
allele count: 7079
allele frequency: 9.784922455975452e-2
allele num: 72346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+57delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.726delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+57delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+57delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+57delT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5789delA
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 1199
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 2501
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 1.75e1
  variant carriers: 2529
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 547
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 1429
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 584
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 237
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 5.25e1
  variant carriers: 463
genotype quality: GenotypeQuality
  all individuals: 9091
  bin: 9.75e1
  variant carriers: 1190
genotype quality: GenotypeQuality
  all individuals: 14540
  bin: 2.5e0
  variant carriers: 359
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 626
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 1.75e1
  variant carriers: 490
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 1.25e1
  variant carriers: 485
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 428
num of homozygotes: 9
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: CT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-34151245-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151247
    reference: chr 17
allele count: 737
allele frequency: 1.018715616620131e-2
allele num: 72346
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+56_332+57dupTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.725_726dupTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+56_596+57dupTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5788_263+5789dupAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+56_596+57dupTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+56_332+57dupTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+56_605+57dupTT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 1.75e1
  variant carriers: 297
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 1.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 3.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 1.75e1
  variant carriers: 57
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-34151245-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151248
    reference: chr 17
allele count: 41
allele frequency: 5.667210350261244e-4
allele num: 72346
alternate allele: CTTT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5787_263+5789dupAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+55_332+57dupTTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.724_726dupTTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+55_596+57dupTTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+55_605+57dupTTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+55_332+57dupTTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+55_596+57dupTTT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14540
  bin: 2.5e0
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-34151245-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151243
    reference: chr 17
allele count: 218
allele frequency: 3.01329721062671e-3
allele num: 72346
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5788_263+5789delAA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+56_332+57delTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+56_596+57delTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+56_605+57delTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.725_726delTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+56_596+57delTT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+56_332+57delTT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 1.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 9091
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 14540
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: CTT
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-34151245-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151242
    reference: chr 17
allele count: 15
allele frequency: 2.07336964033948e-4
allele num: 72346
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14540
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9091
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4568
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10142
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6800
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 582
  num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: CTTT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-34151253-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34151253
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34151254
    reference: chr 17
allele count: 1
allele frequency: 8.344041519950603e-6
allele num: 119846
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.605+51_605+52insC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.596+51_596+52insC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267025
  ensembl transcript: ENST00000588415
  gene symbol: AC015849.19
  hgvsc: ENST00000588415.1:n.263+5781_263+5782insG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591527
  gene symbol: TAF15
  hgvsc: ENST00000591527.1:n.720_721insC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.332+51_332+52insC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.596+51_596+52insC
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.332+51_332+52insC
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 10238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8463
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

17-34160864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160864
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160864
    reference: chr 17
allele count: 2
allele frequency: 1.658649859014762e-5
allele num: 120580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-706A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.333-47A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.606-47A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.597-47A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.597-47A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.337A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7036
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-34160923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160923
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160923
    reference: chr 17
allele count: 3
allele frequency: 2.475696908679793e-5
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.609C>T
  hgvsp: ENST00000311979.3:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-647C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.345C>T
  hgvsp: ENST00000592237.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.618C>T
  hgvsp: ENST00000588240.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.609C>T
  hgvsp: ENST00000590273.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.396C>T
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg206Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-34160924-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160924
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160924
    reference: chr 17
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.397G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-646G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.619G>A
  hgvsp: ENSP00000466950.1:p.Gly207Ser
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.610G>A
  hgvsp: ENSP00000309558.3:p.Gly204Ser
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.610G>A
  hgvsp: ENSP00000465961.1:p.Gly204Ser
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.346G>A
  hgvsp: ENSP00000467528.1:p.Gly116Ser
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14717
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24180
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly207Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

17-34160925-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160925
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160925
    reference: chr 17
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.611G>T
  hgvsp: ENSP00000465961.1:p.Gly204Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.620G>T
  hgvsp: ENSP00000466950.1:p.Gly207Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-645G>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.611G>T
  hgvsp: ENSP00000309558.3:p.Gly204Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.347G>T
  hgvsp: ENSP00000467528.1:p.Gly116Val
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.398G>T
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly207Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

17-34160965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160965
    reference: chr 17
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-605A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+20A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+20A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+20A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+20A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+20A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-34160969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160969
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160969
    reference: chr 17
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+24G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+24G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-601G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+24G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+24G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+24G>A
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14712
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-34160978-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160978
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160979
    reference: chr 17
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+36dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+36dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+36dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-589dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+36dupA
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+36dupA
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum

17-34160986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160986
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160986
    reference: chr 17
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+41A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+41A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+41A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-584A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+41A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+41A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-34160988-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160988
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160988
    reference: chr 17
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-582A>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+43A>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+43A>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+43A>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+43A>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+43A>C
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 14669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-34160988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160988
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160988
    reference: chr 17
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+43A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-582A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+43A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+43A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+43A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+43A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 27
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14669
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

17-34160991-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34160991
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34160991
    reference: chr 17
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.631+46A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.367+46A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-579A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.640+46A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.631+46A>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.418+46A>T
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1850
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-34161520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161520
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161520
    reference: chr 17
allele count: 1040
allele frequency: 8.640313709851619e-3
allele num: 120366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-50T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-50T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-50T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-50T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.252T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-50T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-50T>C
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 5.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 1.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 2.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 4.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 2.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 3.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 3.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 9.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 5
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-34161524-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161524
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161524
    reference: chr 17
allele count: 5
allele frequency: 4.151100041511001e-5
allele num: 120450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-46A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-46A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-46A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-46A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.256A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-46A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-46A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21781
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

17-34161526-ATAAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161526
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161521
    reference: chr 17
allele count: 1
allele frequency: 8.299168423323983e-6
allele num: 120494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.260_264delAAATT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-42_641-38delAAATT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-42_632-38delAAATT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-42_419-38delAAATT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-42_333-38delAAATT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-42_632-38delAAATT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-42_368-38delAAATT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21780
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: ATAAAT
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-34161528-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161528
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161528
    reference: chr 17
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-42A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-42A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-42A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-42A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-42A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-42A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.260A>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-34161532-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161532
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161532
    reference: chr 17
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-38T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-38T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.264T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-38T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-38T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-38T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-38T>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

17-34161541-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161541
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161541
    reference: chr 17
allele count: 340
allele frequency: 2.813870727468344e-3
allele num: 120830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-29T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-29T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.273T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-29T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-29T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-29T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-29T>C
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9161
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9989
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 5
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-34161544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161544
    reference: chr 17
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.276C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-26C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-26C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-26C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-26C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-26C>T
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-26C>T
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-34161546-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161546
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161547
    reference: chr 17
allele count: 4
allele frequency: 3.306058351929912e-5
allele num: 120990
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-18dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-18dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-18dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-18dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.284dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-18dupT
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-18dupT
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-34161549-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161549
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161549
    reference: chr 17
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-21T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-21T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.281T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-21T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-21T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-21T>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-21T>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-34161553-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161553
    reference: chr 17
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-17C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-17C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-17C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-17C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-17C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.285C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-17C>G
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-34161558-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161558
    reference: chr 17
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-12C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-12C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.290C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-12C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-12C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-12C>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-12C>A
  variant of: http://identifiers.org/hgnc/11547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21753
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-34161567-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161567
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161567
    reference: chr 17
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632-3T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368-3T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.299T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419-3T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333-3T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632-3T>C
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641-3T>C
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: c.641-3T>C
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-34161570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161570
    reference: chr 17
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.632G>A
  hgvsp: ENSP00000309558.3:p.Gly211Asp
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.632G>A
  hgvsp: ENSP00000465961.1:p.Gly211Asp
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.333G>A
  hgvsp: ENST00000590051.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.641G>A
  hgvsp: ENSP00000466950.1:p.Gly214Asp
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.302G>A
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.368G>A
  hgvsp: ENSP00000467528.1:p.Gly123Asp
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.419G>A
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly214Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

17-34161574-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161574
    reference: chr 17
allele count: 19
allele frequency: 1.565435190983093e-4
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.636C>G
  hgvsp: ENSP00000465961.1:p.His212Gln
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.423C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.645C>G
  hgvsp: ENSP00000466950.1:p.His215Gln
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.306C>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.636C>G
  hgvsp: ENSP00000309558.3:p.His212Gln
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.337C>G
  hgvsp: ENSP00000466955.1:p.Gln113Glu
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.372C>G
  hgvsp: ENSP00000467528.1:p.His124Gln
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His215Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS

17-34161575-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 34161575
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 34161575
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466950
  ensembl transcript: ENST00000588240
  gene symbol: TAF15
  hgvsc: ENST00000588240.1:c.646A>G
  hgvsp: ENSP00000466950.1:p.Arg216Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000586970
  gene symbol: TAF15
  hgvsc: ENST00000586970.1:n.307A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000465961
  ensembl transcript: ENST00000590273
  gene symbol: TAF15
  hgvsc: ENST00000590273.1:c.637A>G
  hgvsp: ENSP00000465961.1:p.Arg213Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000466955
  ensembl transcript: ENST00000590051
  gene symbol: TAF15
  hgvsc: ENST00000590051.1:c.338A>G
  hgvsp: ENSP00000466955.1:p.Gln113Arg
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172660
  ensembl transcript: ENST00000591763
  gene symbol: TAF15
  hgvsc: ENST00000591763.1:n.424A>G
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000309558
  ensembl transcript: ENST00000311979
  gene symbol: TAF15
  hgvsc: ENST00000311979.3:c.637A>G
  hgvsp: ENSP00000309558.3:p.Arg213Gly
  variant of: http://identifiers.org/hgnc/11547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172660
  ensembl protein: ENSP00000467528
  ensembl transcript: ENST00000592237
  gene symbol: TAF15
  hgvsc: ENST00000592237.1:c.373A>G
  hgvsp: ENSP00000467528.1:p.Arg125Gly
  variant of: http://identifiers.org/hgnc/11547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21754
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg216Gly
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 3260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13513
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.454e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
type: SiteQuality
SIO_000300: 2.606195e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

QD
type: SiteQuality
SIO_000300: 1.658e1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.631e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13511
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.606474e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 2.884e0

QD
type: SiteQuality
SIO_000300: 1.183e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13511
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 2.884e0

DP
type: SiteQuality
SIO_000300: 2.606474e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

DP
type: SiteQuality
SIO_000300: 2.606673e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeQuality
all individuals: 3269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 24963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.608395e6

FS
type: SiteQuality
SIO_000300: 3.464e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

QD
type: SiteQuality
SIO_000300: 1.014e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13518
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3367
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.046993780234969e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.464e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.014e1

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.01e-1

DP
type: SiteQuality
SIO_000300: 2.608395e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1850
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GenotypeQuality
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GenotypeQuality
all individuals: 13555
bin: 9.75e1
variant carriers: 169

GenotypeQuality
all individuals: 24964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 13
allele frequency: 1.123013130615066e-3
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49288176232579e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 151
allele frequency: 1.451364859669358e-2
allele num: 10404
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 2.61445e6

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

FS
type: SiteQuality
SIO_000300: 1.194e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.187e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 2.609043e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.817e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: -1.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1858
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.306e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 2.609248e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.239e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeQuality
all individuals: 10105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 13442
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3374
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

DP
type: SiteQuality
SIO_000300: 2.609108e6

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.328e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 2314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13449
bin: 9.75e1
variant carriers: 67

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 8.541117238072404e-4
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.360749924402782e-3
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 5.841e1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 2.614534e6

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

QD
type: SiteQuality
SIO_000300: 1.507e1

GenotypeQuality
all individuals: 3239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.953e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.029e0

DP
type: SiteQuality
SIO_000300: 2.614577e6

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 5.856e1

QD
type: SiteQuality
SIO_000300: 1.451e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10061
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13338
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.876e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.611e0

VQSLOD
type: SiteQuality
SIO_000300: -1.656e0

QD
type: SiteQuality
SIO_000300: 1.473e1

DP
type: SiteQuality
SIO_000300: 2.610671e6

FS
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 1210
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 840
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4145
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 1427
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1385
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2757
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 9304
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 821
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3709
bin: 9.75e1
variant carriers: 104

GenotypeQuality
all individuals: 1397
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1078
bin: 3.75e1
variant carriers: 3

Latino
type: Population
allele count: 3
allele frequency: 2.980329823167097e-4
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 105
allele frequency: 2.186588921282799e-2
allele num: 4802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 9.243974909210961e-4
allele num: 60580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.696186166774402e-4
allele num: 9282
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.175548589341693e-3
allele num: 7656
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.740648379052369e-3
allele num: 802
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 3.20224e2

VQSLOD
type: SiteQuality
SIO_000300: -4.712e2

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 2.754173e6

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.169e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.771e0

FS
type: SiteQuality
SIO_000300: 2.21199e2

VQSLOD
type: SiteQuality
SIO_000300: -4.584e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.058e0

QD
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.549801e6

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 552
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3402
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4718
bin: 9.75e1
variant carriers: 83

GenotypeQuality
all individuals: 30906
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1724
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.578101304215954e-4
allele num: 65940
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319647413593134e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 83
allele frequency: 1.408689748811948e-2
allele num: 5892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.416856492027335e-3
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.771e0

VQSLOD
type: SiteQuality
SIO_000300: -4.584e1

FS
type: SiteQuality
SIO_000300: 2.21199e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.058e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.549801e6

QD
type: SiteQuality
SIO_000300: 2.83e0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 31480
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4830
bin: 9.75e1
variant carriers: 70

GenotypeQuality
all individuals: 537
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 912
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3434
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 11889
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 71
allele frequency: 1.234782608695652e-2
allele num: 5750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.564953679954133e-4
allele num: 66278
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.524886877828055e-3
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.128e2

MQRankSum
type: SiteQuality
SIO_000300: -2.704e0

MQ
type: SiteQuality
SIO_000300: 5.612e1

QD
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 2.15879e2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 2.544158e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.225e0

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 166
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
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variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 31120
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 879
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variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2598
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.537735849056604e-3
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 66
allele frequency: 1.260985861673672e-2
allele num: 5234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.466395363176717e-4
allele num: 64872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.90365e2

DP
type: SiteQuality
SIO_000300: 2.585109e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.212e0

MQ
type: SiteQuality
SIO_000300: 5.574e1

VQSLOD
type: SiteQuality
SIO_000300: -1.649e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.627e0

MQRankSum
type: SiteQuality
SIO_000300: -3.362e0

GenotypeQuality
all individuals: 806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 632
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.143e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 2.492779e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

FS
type: SiteQuality
SIO_000300: 2.892e0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.525320317266626e-3
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e0

QD
type: SiteQuality
SIO_000300: 3.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.232e0

DP
type: SiteQuality
SIO_000300: 2.490425e6

FS
type: SiteQuality
SIO_000300: 1.56586e2

MQ
type: SiteQuality
SIO_000300: 5.392e1

MQRankSum
type: SiteQuality
SIO_000300: -4.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 789
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 12548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 9.75e1
variant carriers: 15

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.71875e-3
allele num: 6400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.500075000750007e-5
allele num: 66666
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.657e0

MQRankSum
type: SiteQuality
SIO_000300: -4.725e0

MQ
type: SiteQuality
SIO_000300: 5.412e1

FS
type: SiteQuality
SIO_000300: 1.56172e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.131e2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.341e0

DP
type: SiteQuality
SIO_000300: 2.489637e6

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
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GenotypeQuality
all individuals: 2781
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GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.507958435942099e-5
allele num: 66596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.505016722408027e-3
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

DP
type: SiteQuality
SIO_000300: 2.492174e6

QD
type: SiteQuality
SIO_000300: 3.75e0

FS
type: SiteQuality
SIO_000300: 1.25421e2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.805e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.22e0

MQ
type: SiteQuality
SIO_000300: 5.429e1

MQRankSum
type: SiteQuality
SIO_000300: -4.442e0

VQSLOD
type: SiteQuality
SIO_000300: -7.495999999999999e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.03e-1

GenotypeQuality
all individuals: 3727
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2816
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.573e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 2.466381e6

VQSLOD
type: SiteQuality
SIO_000300: -2.456e0

FS
type: SiteQuality
SIO_000300: 1.0363e1

QD
type: SiteQuality
SIO_000300: 1.558e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1434
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 4.332e0

DP
type: SiteQuality
SIO_000300: 2.466105e6

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.866e1

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
all individuals: 3717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 35380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 12568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
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variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

DP
type: SiteQuality
SIO_000300: 2.463205e6

MQ
type: SiteQuality
SIO_000300: 5.834e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

FS
type: SiteQuality
SIO_000300: 3.027e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 35282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.25e1
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GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12549
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

DP
type: SiteQuality
SIO_000300: 2.461323e6

VQSLOD
type: SiteQuality
SIO_000300: -5.191e-1

QD
type: SiteQuality
SIO_000300: 9.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000570108320581e-5
allele num: 66654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.455005e6

FS
type: SiteQuality
SIO_000300: 5.596e0

QD
type: SiteQuality
SIO_000300: 7.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.148e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.585e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.825e1

FS
type: SiteQuality
SIO_000300: 1.1759e1

DP
type: SiteQuality
SIO_000300: 2.444292e6

QD
type: SiteQuality
SIO_000300: 1.122e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.423403e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.897e1

MQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.661e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.037e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 47
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

QD
type: SiteQuality
SIO_000300: 1.467e1

FS
type: SiteQuality
SIO_000300: 4.504e0

DP
type: SiteQuality
SIO_000300: 2.416755e6

VQSLOD
type: SiteQuality
SIO_000300: -6.007e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32561
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.467e1

DP
type: SiteQuality
SIO_000300: 2.416755e6

VQSLOD
type: SiteQuality
SIO_000300: -6.007e-1

FS
type: SiteQuality
SIO_000300: 4.504e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

MQ
type: SiteQuality
SIO_000300: 5.813e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 557
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.777e0

MQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.636e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 2.407859e6

GenotypeQuality
all individuals: 2655
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 107

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 754
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variant carriers: 1

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.634994206257242e-4
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.465003465003465e-4
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.356279574429609e-4
allele num: 66358
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 5.461165048543689e-3
allele num: 16480
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

FS
type: SiteQuality
SIO_000300: 7.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

MQ
type: SiteQuality
SIO_000300: 5.741e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

DP
type: SiteQuality
SIO_000300: 2.303103e6

GenotypeQuality
all individuals: 3843
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
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GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 8104
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GenotypeQuality
all individuals: 736
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
all individuals: 8871
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 2.232224e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

QD
type: SiteQuality
SIO_000300: 1.571e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

GenotypeQuality
all individuals: 1348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16742
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variant carriers: 0

GenotypeQuality
all individuals: 4104
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variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3629
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8924
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variant carriers: 0

GenotypeQuality
all individuals: 1186
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variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.070469007777516e-4
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.148832e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 2.941e0

MQ
type: SiteQuality
SIO_000300: 5.537e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.248e0

VQSLOD
type: SiteQuality
SIO_000300: -1.595e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

GenotypeQuality
all individuals: 14395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
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GenotypeQuality
all individuals: 3619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1682
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GenotypeQuality
all individuals: 1178
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variant carriers: 0

GenotypeQuality
all individuals: 725
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GenotypeQuality
all individuals: 4253
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variant carriers: 0

GenotypeQuality
all individuals: 6121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64982
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.790436005625879e-5
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.0824e1

MQ
type: SiteQuality
SIO_000300: 4.339e1

QD
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 2.120415e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.448e0

VQSLOD
type: SiteQuality
SIO_000300: -3.033e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeQuality
all individuals: 1975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
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GenotypeQuality
all individuals: 3619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
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GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.120415e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

FS
type: SiteQuality
SIO_000300: 2.0824e1

VQSLOD
type: SiteQuality
SIO_000300: -3.033e0

QD
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 4.339e1

GenotypeQuality
all individuals: 2886
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.75e1
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GenotypeQuality
all individuals: 3619
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 4246
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1023
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9555
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.072196620583717e-4
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.245640259093174e-4
allele num: 8028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.418260896971225e-4
allele num: 63458
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.803426510369702e-4
allele num: 11090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.07185e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 7.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.013e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.674e1

QD
type: SiteQuality
SIO_000300: 1.209e1

VQSLOD
type: SiteQuality
SIO_000300: -1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

GenotypeQuality
all individuals: 707
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4018
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
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GenotypeQuality
all individuals: 1217
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GenotypeQuality
all individuals: 3592
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3396
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variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.484243288808196e-5
allele num: 15422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.174e-1

FS
type: SiteQuality
SIO_000300: 2.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

QD
type: SiteQuality
SIO_000300: 5.28e0

DP
type: SiteQuality
SIO_000300: 2.052694e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

GenotypeQuality
all individuals: 1637
bin: 6.75e1
variant carriers: 741

GenotypeQuality
all individuals: 14540
bin: 2.5e0
variant carriers: 546

GenotypeQuality
all individuals: 1899
bin: 5.25e1
variant carriers: 877

GenotypeQuality
all individuals: 3546
bin: 2.25e1
variant carriers: 779

GenotypeQuality
all individuals: 9091
bin: 9.75e1
variant carriers: 6361

GenotypeQuality
all individuals: 1079
bin: 8.25e1
variant carriers: 593

GenotypeQuality
all individuals: 2146
bin: 4.75e1
variant carriers: 846

GenotypeQuality
all individuals: 2425
bin: 1.75e1
variant carriers: 739

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 601

GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 767

African
type: Population
allele count: 814
allele frequency: 1.198468786808009e-1
allele num: 6792
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 835
allele frequency: 1.822348319511131e-1
allele num: 4582
num of homozygotes: 15

Other
type: Population
allele count: 150
allele frequency: 2.577319587628866e-1
allele num: 582
num of homozygotes: 3

East Asian
type: Population
allele count: 1224
allele frequency: 2.679509632224168e-1
allele num: 4568
num of homozygotes: 18

Latino
type: Population
allele count: 2246
allele frequency: 3.302941176470588e-1
allele num: 6800
num of homozygotes: 37

European (Non-Finnish)
type: Population
allele count: 7973
allele frequency: 2.050668724279835e-1
allele num: 38880
num of homozygotes: 72

South Asian
type: Population
allele count: 2859
allele frequency: 2.818970617235259e-1
allele num: 10142
num of homozygotes: 8

MQ
type: SiteQuality
SIO_000300: 5.805e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 4.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.289e-1

DP
type: SiteQuality
SIO_000300: 1.541478e6

GenotypeQuality
all individuals: 1362
bin: 7.25e1
variant carriers: 262

GenotypeQuality
all individuals: 2314
bin: 4.25e1
variant carriers: 611

GenotypeQuality
all individuals: 3546
bin: 2.25e1
variant carriers: 614

GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 355

GenotypeQuality
all individuals: 1637
bin: 6.75e1
variant carriers: 312

GenotypeQuality
all individuals: 1079
bin: 8.25e1
variant carriers: 183

GenotypeQuality
all individuals: 3068
bin: 3.25e1
variant carriers: 630

GenotypeQuality
all individuals: 1482
bin: 5.75e1
variant carriers: 417

GenotypeQuality
all individuals: 2146
bin: 4.75e1
variant carriers: 488

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 129

European (Finnish)
type: Population
allele count: 133
allele frequency: 2.902662592754256e-2
allele num: 4582
num of homozygotes: 0

African
type: Population
allele count: 991
allele frequency: 1.45906949352179e-1
allele num: 6792
num of homozygotes: 9

East Asian
type: Population
allele count: 302
allele frequency: 6.611208406304729e-2
allele num: 4568
num of homozygotes: 0

South Asian
type: Population
allele count: 1211
allele frequency: 1.194044567146519e-1
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3822
allele frequency: 9.830246913580247e-2
allele num: 38880
num of homozygotes: 0

Other
type: Population
allele count: 43
allele frequency: 7.388316151202749e-2
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 577
allele frequency: 8.485294117647059e-2
allele num: 6800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

QD
type: SiteQuality
SIO_000300: 4.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.805e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.289e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

DP
type: SiteQuality
SIO_000300: 1.541478e6

GenotypeQuality
all individuals: 2146
bin: 4.75e1
variant carriers: 49

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 38

GenotypeQuality
all individuals: 14540
bin: 2.5e0
variant carriers: 70

GenotypeQuality
all individuals: 1331
bin: 7.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1899
bin: 5.25e1
variant carriers: 54

GenotypeQuality
all individuals: 1637
bin: 6.75e1
variant carriers: 39

GenotypeQuality
all individuals: 1482
bin: 5.75e1
variant carriers: 47

GenotypeQuality
all individuals: 9091
bin: 9.75e1
variant carriers: 266

GenotypeQuality
all individuals: 3546
bin: 2.25e1
variant carriers: 48

Latino
type: Population
allele count: 96
allele frequency: 1.411764705882353e-2
allele num: 6800
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.239104829210836e-3
allele num: 6792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.182453077258839e-3
allele num: 4582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 258
allele frequency: 6.635802469135803e-3
allele num: 38880
num of homozygotes: 0

East Asian
type: Population
allele count: 49
allele frequency: 1.072679509632224e-2
allele num: 4568
num of homozygotes: 0

South Asian
type: Population
allele count: 297
allele frequency: 2.928416485900217e-2
allele num: 10142
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 8.591065292096221e-3
allele num: 582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

QD
type: SiteQuality
SIO_000300: 4.59e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 1.541478e6

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.289e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2425
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2542
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 906
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2700
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1482
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9091
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 2146
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 7.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.774797870242556e-3
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 3.343621399176955e-4
allele num: 38880
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.378283712784588e-4
allele num: 4568
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.176470588235294e-3
allele num: 6800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 4.59e0

DP
type: SiteQuality
SIO_000300: 1.541478e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.289e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

GenotypeQuality
all individuals: 1482
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1079
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2700
bin: 3.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2425
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1637
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1331
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1362
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2314
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1899
bin: 5.25e1
variant carriers: 22

African
type: Population
allele count: 10
allele frequency: 1.472320376914017e-3
allele num: 6792
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.313485113835377e-3
allele num: 4568
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 4.239794912246105e-3
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 135
allele frequency: 3.472222222222222e-3
allele num: 38880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 3.088235294117647e-3
allele num: 6800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.547359231776517e-4
allele num: 4582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.541478e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.289e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 4.59e0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.182453077258839e-4
allele num: 4582
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.472320376914017e-3
allele num: 6792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.02880658436214e-4
allele num: 38880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 4.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

DP
type: SiteQuality
SIO_000300: 1.541478e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.289e-1

GenotypeQuality
all individuals: 2105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65740
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e0

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.798e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.871e1

DP
type: SiteQuality
SIO_000300: 2.145533e6

GenotypeQuality
all individuals: 971
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14716
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025077895755816e-5
allele num: 66114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.265135e6

QD
type: SiteQuality
SIO_000300: 1.522e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.652e0

GenotypeQuality
all individuals: 2197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14720
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2953
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 2.326769e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.206e1

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 2.32714e6

FS
type: SiteQuality
SIO_000300: 2.224e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.52e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.119e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.429e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

VQSLOD
type: SiteQuality
SIO_000300: -1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
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SIO_000300: 2.326988e6

FS
type: SiteQuality
SIO_000300: 4.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 3.19e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.5664e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

DP
type: SiteQuality
SIO_000300: 2.31071e6

QD
type: SiteQuality
SIO_000300: 8.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.413e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.263e0

MQ
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SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.289357e6

FS
type: SiteQuality
SIO_000300: 2.0067e1

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.853e0

FS
type: SiteQuality
SIO_000300: 1.4353e1

DP
type: SiteQuality
SIO_000300: 2.264904e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.621e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 2.261375e6

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509160604871571e-5
allele num: 66262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 2.261375e6

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510072181450273e-5
allele num: 66222
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
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allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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QD
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SIO_000300: 1.098e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1028

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
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allele frequency: 2.12636695018226e-3
allele num: 16460
num of homozygotes: 1

African
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allele count: 13
allele frequency: 1.287128712871287e-3
allele num: 10100
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 4.509191814082553e-3
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 790
allele frequency: 1.193173236671198e-2
allele num: 66210
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 137
allele frequency: 2.075128748863981e-2
allele num: 6602
num of homozygotes: 1

Other
type: Population
allele count: 13
allele frequency: 1.441241685144124e-2
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.608e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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allele count: 5
allele frequency: 5.842486562280906e-4
allele num: 8558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.682e1

ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12705
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.85e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.883e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 4.857e1

DP
type: SiteQuality
SIO_000300: 2.809786e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
all individuals: 3690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 3287
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variant carriers: 0

GenotypeQuality
all individuals: 21786
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

FS
type: SiteQuality
SIO_000300: 4.559e0

DP
type: SiteQuality
SIO_000300: 2.8139e6

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.912e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 2.472e0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.402e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.36e-1

DP
type: SiteQuality
SIO_000300: 2.822332e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.53e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15048
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GenotypeQuality
all individuals: 21907
bin: 9.75e1
variant carriers: 333

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.521058965102287e-5
allele num: 66480
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.214034235765449e-4
allele num: 16474
num of homozygotes: 0

African
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allele count: 320
allele frequency: 3.136639874534405e-2
allele num: 10202
num of homozygotes: 5

Latino
type: Population
allele count: 12
allele frequency: 1.039140976792518e-3
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.888e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.496e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

DP
type: SiteQuality
SIO_000300: 2.843016e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.422e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.852e1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

FS
type: SiteQuality
SIO_000300: 3.739e0

DP
type: SiteQuality
SIO_000300: 2.843547e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.334e0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2018
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.930259816370385e-4
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

DP
type: SiteQuality
SIO_000300: 2.844882e6

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

FS
type: SiteQuality
SIO_000300: 2.675e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.924e1

QD
type: SiteQuality
SIO_000300: 1.163e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.545e1

FS
type: SiteQuality
SIO_000300: 5.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.478e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

DP
type: SiteQuality
SIO_000300: 2.846671e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
SIO_000300: 6.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.939e1

DP
type: SiteQuality
SIO_000300: 2.848385e6

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 17
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2762
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variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.850185e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.819e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

FS
type: SiteQuality
SIO_000300: 9.08e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 5.87e1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6821
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21751
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.795e0

QD
type: SiteQuality
SIO_000300: 1.164e1

DP
type: SiteQuality
SIO_000300: 2.851761e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

MQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

FS
type: SiteQuality
SIO_000300: 8.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.089e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21755
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2015
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6820
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.697679995204124e-4
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.829e1

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.18e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.853407e6

FS
type: SiteQuality
SIO_000300: 1.152e0