20-44523248-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523248
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523248
    reference: chr 20
allele count: 76084
allele frequency: 6.275176088283325e-1
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-41T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-41T>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.25e1
  variant carriers: 1051
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 4.75e1
  variant carriers: 5399
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.25e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 1451
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 6.75e1
  variant carriers: 4217
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 5.25e1
  variant carriers: 5937
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.25e1
  variant carriers: 1530
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 5.75e1
  variant carriers: 5657
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 9.75e1
  variant carriers: 6019
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 6.25e1
  variant carriers: 4858
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.75e1
  variant carriers: 2853
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.25e1
  variant carriers: 3228
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.75e1
  variant carriers: 2378
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 8.25e1
  variant carriers: 1845
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 4.25e1
  variant carriers: 4198
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 766
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 6.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 9.25e1
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 8.25e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 41
num of homozygotes: 24303
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

20-44523249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523249
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523249
    reference: chr 20
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-40G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-40G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

20-44523251-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523251
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523251
    reference: chr 20
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-38G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-38G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

20-44523254-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523254
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523254
    reference: chr 20
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-35T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-35T>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

20-44523262-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523262
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523262
    reference: chr 20
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-27G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-27G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

20-44523264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523264
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523264
    reference: chr 20
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-25A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-25A>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

20-44523267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523267
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523267
    reference: chr 20
allele count: 224
allele frequency: 1.845140032948929e-3
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-22G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-22G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

20-44523272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523272
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523272
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-17T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-17T>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-44523277-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523277
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523277
    reference: chr 20
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-12G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-12G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

20-44523281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523281
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523281
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.307-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.832-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.86-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.781-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*143-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.778-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.778-8C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.437-8C>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: c.832-8C>G
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

20-44523290-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523290
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523290
    reference: chr 20
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.87T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.438T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.308T>C
  hgvsp: ENSP00000408533.2:p.Leu103Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.782T>C
  hgvsp: ENSP00000346952.4:p.Leu261Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.779T>C
  hgvsp: ENSP00000191018.5:p.Leu260Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*144T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.779T>C
  hgvsp: ENSP00000361537.2:p.Leu260Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.833T>C
  hgvsp: ENSP00000361562.3:p.Leu278Pro
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu278Pro
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

20-44523300-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523300
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523300
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*154G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.789G>T
  hgvsp: ENST00000191018.5:c.789G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.318G>T
  hgvsp: ENST00000419493.2:c.318G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.789G>T
  hgvsp: ENST00000372459.2:c.789G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.843G>T
  hgvsp: ENST00000372484.3:c.843G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.448G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.97G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.792G>T
  hgvsp: ENST00000354880.5:c.792G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val281Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ

20-44523304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523304
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523304
    reference: chr 20
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.101C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.793C>T
  hgvsp: ENSP00000191018.5:p.Arg265Cys
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.322C>T
  hgvsp: ENSP00000408533.2:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.796C>T
  hgvsp: ENSP00000346952.4:p.Arg266Cys
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.452C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.793C>T
  hgvsp: ENSP00000361537.2:p.Arg265Cys
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.847C>T
  hgvsp: ENSP00000361562.3:p.Arg283Cys
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg283Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

20-44523309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523309
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523309
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.327C>T
  hgvsp: ENST00000419493.2:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.801C>T
  hgvsp: ENST00000354880.5:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.798C>T
  hgvsp: ENST00000372459.2:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*163C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.798C>T
  hgvsp: ENST00000191018.5:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.852C>T
  hgvsp: ENST00000372484.3:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.106C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.457C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile284Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

20-44523313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523313
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523313
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.110G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.805G>A
  hgvsp: ENSP00000346952.4:p.Gly269Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.802G>A
  hgvsp: ENSP00000361537.2:p.Gly268Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.331G>A
  hgvsp: ENSP00000408533.2:p.Gly111Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.461G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.802G>A
  hgvsp: ENSP00000191018.5:p.Gly268Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*167G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.856G>A
  hgvsp: ENSP00000361562.3:p.Gly286Ser
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly286Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

20-44523322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523322
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523322
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*176G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.811G>C
  hgvsp: ENSP00000191018.5:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.119G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.814G>C
  hgvsp: ENSP00000346952.4:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.340G>C
  hgvsp: ENSP00000408533.2:p.Gly114Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.811G>C
  hgvsp: ENSP00000361537.2:p.Gly271Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.865G>C
  hgvsp: ENSP00000361562.3:p.Gly289Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.470G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly289Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

20-44523327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523327
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523327
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.819C>T
  hgvsp: ENST00000354880.5:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.816C>T
  hgvsp: ENST00000372459.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.475C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.816C>T
  hgvsp: ENST00000191018.5:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.345C>T
  hgvsp: ENST00000419493.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.870C>T
  hgvsp: ENST00000372484.3:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*181C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.124C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu290Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

20-44523350-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523350
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523350
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*204C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.839C>T
  hgvsp: ENSP00000361537.2:p.Pro280Leu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.368C>T
  hgvsp: ENSP00000408533.2:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.839C>T
  hgvsp: ENSP00000191018.5:p.Pro280Leu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.842C>T
  hgvsp: ENSP00000346952.4:p.Pro281Leu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.147C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.498C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.893C>T
  hgvsp: ENSP00000361562.3:p.Pro298Leu
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro298Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

20-44523351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523351
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523351
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.499G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.840G>A
  hgvsp: ENST00000372459.2:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.894G>A
  hgvsp: ENST00000372484.3:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.840G>A
  hgvsp: ENST00000191018.5:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*205G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.843G>A
  hgvsp: ENST00000354880.5:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.369G>A
  hgvsp: ENST00000419493.2:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.148G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro298Pro
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

20-44523354-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523354
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523354
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*208T>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.897T>A
  hgvsp: ENSP00000361562.3:p.Cys299Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.151T>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.372T>A
  hgvsp: ENSP00000408533.2:p.Cys124Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.843T>A
  hgvsp: ENSP00000361537.2:p.Cys281Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.502T>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.843T>A
  hgvsp: ENSP00000191018.5:p.Cys281Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.846T>A
  hgvsp: ENSP00000346952.4:p.Cys282Ter
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys299Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

20-44523357-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523357
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523357
    reference: chr 20
allele count: 40
allele frequency: 3.294567258590584e-4
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.375T>C
  hgvsp: ENST00000419493.2:c.375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.849T>C
  hgvsp: ENST00000354880.5:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.154T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.846T>C
  hgvsp: ENST00000372459.2:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.846T>C
  hgvsp: ENST00000191018.5:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*211T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.900T>C
  hgvsp: ENST00000372484.3:c.900T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.505T>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala300Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

20-44523362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523362
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523362
    reference: chr 20
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*216G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.851G>A
  hgvsp: ENSP00000191018.5:p.Gly284Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.854G>A
  hgvsp: ENSP00000346952.4:p.Gly285Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.510G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.159G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.851G>A
  hgvsp: ENSP00000361537.2:p.Gly284Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.380G>A
  hgvsp: ENSP00000408533.2:p.Gly127Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.905G>A
  hgvsp: ENSP00000361562.3:p.Gly302Glu
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly302Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

20-44523363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523363
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523363
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.511G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.160G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.906G>A
  hgvsp: ENST00000372484.3:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.381G>A
  hgvsp: ENST00000419493.2:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.855G>A
  hgvsp: ENST00000354880.5:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.852G>A
  hgvsp: ENST00000372459.2:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.852G>A
  hgvsp: ENST00000191018.5:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*217G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly302Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

20-44523366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523366
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523366
    reference: chr 20
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.163G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.514G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.858G>A
  hgvsp: ENST00000354880.5:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*220G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.909G>A
  hgvsp: ENST00000372484.3:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.384G>A
  hgvsp: ENST00000419493.2:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.855G>A
  hgvsp: ENST00000372459.2:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.855G>A
  hgvsp: ENST00000191018.5:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36723
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val303Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

20-44523389-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523389
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523389
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+9T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+9T>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36721
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

20-44523400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523400
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523400
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+20C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+20C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

20-44523405-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523405
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523405
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+25A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+25A>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/20-44523410-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523410
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523409
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+34delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+34delC
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: AC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/20-44523411-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523411
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523411
    reference: chr 20
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+31C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+31C>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36723
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

20-44523411-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523411
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523411
    reference: chr 20
allele count: 7
allele frequency: 5.765587678115476e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+31C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+31C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36723
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

20-44523416-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523416
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523416
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.923+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.869+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.528+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*234+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.177+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.872+36G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.869+36G>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36722
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5784
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

20-44523426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523426
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523426
    reference: chr 20
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.398+46G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.870-36G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.873-36G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*235-36G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.870-36G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.529-36G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.924-36G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.178-36G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

20-44523436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523436
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523436
    reference: chr 20
allele count: 1
allele frequency: 9.582031774017363e-6
allele num: 104362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.178-26A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*235-26A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.529-26A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-36A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.870-26A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.873-26A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.870-26A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.924-26A>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

20-44523442-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523442
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523441
    reference: chr 20
allele count: 61467
allele frequency: 5.06401384083045e-1
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.924-15delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.870-15delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.529-15delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.178-15delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-25delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*235-15delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.873-15delC
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.870-15delC
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 5.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 5.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 43985
  bin: 9.75e1
  variant carriers: 42481
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 6.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.75e1
  variant carriers: 310
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 16614
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: TC
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/20-44523445-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523445
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523445
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.870-17C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.178-17C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.870-17C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.924-17C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-27C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*235-17C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.873-17C>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.529-17C>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

20-44523447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523447
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523447
    reference: chr 20
allele count: 24
allele frequency: 1.976838047542955e-4
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.178-15C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.873-15C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*235-15C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.870-15C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-25C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.924-15C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.529-15C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.870-15C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31583
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

20-44523450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523450
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523450
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.873-12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.529-12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.870-12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.178-12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.924-12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*235-12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.870-12C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

20-44523465-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523465
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523465
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.181T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.873T>G
  hgvsp: ENSP00000361537.2:p.Tyr291Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-7T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.532T>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.873T>G
  hgvsp: ENSP00000191018.5:p.Tyr291Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.927T>G
  hgvsp: ENSP00000361562.3:p.Tyr309Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.876T>G
  hgvsp: ENSP00000346952.4:p.Tyr292Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*238T>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr309Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

20-44523466-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523466
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523466
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*239G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.877G>C
  hgvsp: ENSP00000346952.4:p.Glu293Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.874G>C
  hgvsp: ENSP00000191018.5:p.Glu292Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.874G>C
  hgvsp: ENSP00000361537.2:p.Glu292Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.928G>C
  hgvsp: ENSP00000361562.3:p.Glu310Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.182G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-6G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.533G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu310Gln
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

20-44523469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523469
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523469
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.536A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.877A>G
  hgvsp: ENSP00000361537.2:p.Lys293Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.931A>G
  hgvsp: ENSP00000361562.3:p.Lys311Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.877A>G
  hgvsp: ENSP00000191018.5:p.Lys293Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.185A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.880A>G
  hgvsp: ENSP00000346952.4:p.Lys294Glu
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*242A>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399-3A>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53493
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys311Glu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

20-44523472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523472
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523472
    reference: chr 20
allele count: 387
allele frequency: 3.187651351663015e-3
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.188G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.880G>A
  hgvsp: ENSP00000361537.2:p.Asp294Asn
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*245G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.934G>A
  hgvsp: ENSP00000361562.3:p.Asp312Asn
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.399G>A
  hgvsp: ENST00000419493.2:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.880G>A
  hgvsp: ENSP00000191018.5:p.Asp294Asn
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.883G>A
  hgvsp: ENSP00000346952.4:p.Asp295Asn
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.539G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31732
  bin: 9.75e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp312Asn
num of homozygotes: 4
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

20-44523477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523477
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523477
    reference: chr 20
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.939T>C
  hgvsp: ENST00000372484.3:c.939T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*250T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.888T>C
  hgvsp: ENST00000354880.5:c.888T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.193T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.885T>C
  hgvsp: ENST00000372459.2:c.885T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.885T>C
  hgvsp: ENST00000191018.5:c.885T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.404T>C
  hgvsp: ENSP00000408533.2:p.Leu135Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.544T>C
  variant of: http://identifiers.org/hgnc/9251
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31621
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu135Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

20-44523502-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523502
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523502
    reference: chr 20
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.910A>T
  hgvsp: ENSP00000361537.2:p.Ile304Phe
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.429A>T
  hgvsp: ENST00000419493.2:c.429A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.218A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.910A>T
  hgvsp: ENSP00000191018.5:p.Ile304Phe
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.913A>T
  hgvsp: ENSP00000346952.4:p.Ile305Phe
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.569A>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.964A>T
  hgvsp: ENSP00000361562.3:p.Ile322Phe
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*275A>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31625
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile322Phe
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/20-44523508-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523508
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523508
    reference: chr 20
allele count: 29
allele frequency: 2.394517380893403e-4
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.575A>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.970A>C
  hgvsp: ENSP00000361562.3:p.Thr324Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.919A>C
  hgvsp: ENSP00000346952.4:p.Thr307Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*281A>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.916A>C
  hgvsp: ENSP00000191018.5:p.Thr306Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.916A>C
  hgvsp: ENSP00000361537.2:p.Thr306Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.435A>C
  hgvsp: ENST00000419493.2:c.435A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.224A>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31658
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53274
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Thr324Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

20-44523510-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523510
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523510
    reference: chr 20
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.437T>C
  hgvsp: ENSP00000408533.2:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.972T>C
  hgvsp: ENST00000372484.3:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.577T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*283T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.918T>C
  hgvsp: ENST00000191018.5:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.921T>C
  hgvsp: ENST00000354880.5:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.918T>C
  hgvsp: ENST00000372459.2:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.226T>C
  variant of: http://identifiers.org/hgnc/9251
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu146Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-44523512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523512
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523512
    reference: chr 20
allele count: 9
allele frequency: 7.851347814708192e-5
allele num: 114630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.920G>A
  hgvsp: ENSP00000191018.5:p.Arg307His
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.439G>A
  hgvsp: ENSP00000408533.2:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.923G>A
  hgvsp: ENSP00000346952.4:p.Arg308His
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.579G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.228G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*285G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.920G>A
  hgvsp: ENSP00000361537.2:p.Arg307His
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.974G>A
  hgvsp: ENSP00000361562.3:p.Arg325His
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32381
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg325His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

20-44523512-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523512
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523512
    reference: chr 20
allele count: 21
allele frequency: 1.831981156765245e-4
allele num: 114630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.579G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.923G>C
  hgvsp: ENSP00000346952.4:p.Arg308Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.974G>C
  hgvsp: ENSP00000361562.3:p.Arg325Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*285G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.920G>C
  hgvsp: ENSP00000191018.5:p.Arg307Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.439G>C
  hgvsp: ENSP00000408533.2:p.Ala147Pro
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.228G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.920G>C
  hgvsp: ENSP00000361537.2:p.Arg307Pro
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32381
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg325Pro
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

20-44523526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523526
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523526
    reference: chr 20
allele count: 28
allele frequency: 2.306311055466781e-4
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.934C>T
  hgvsp: ENSP00000361537.2:p.Arg312Trp
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.937C>T
  hgvsp: ENSP00000346952.4:p.Arg313Trp
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.934C>T
  hgvsp: ENSP00000191018.5:p.Arg312Trp
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.988C>T
  hgvsp: ENSP00000361562.3:p.Arg330Trp
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.593C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.453C>T
  hgvsp: ENST00000419493.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.242C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*299C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32697
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg330Trp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

20-44523527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523527
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523527
    reference: chr 20
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.454G>A
  hgvsp: ENSP00000408533.2:p.Gly152Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.243G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*300G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.935G>A
  hgvsp: ENSP00000361537.2:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.935G>A
  hgvsp: ENSP00000191018.5:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.594G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.938G>A
  hgvsp: ENSP00000346952.4:p.Arg313Gln
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.989G>A
  hgvsp: ENSP00000361562.3:p.Arg330Gln
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32692
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg330Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

20-44523530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523530
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523530
    reference: chr 20
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*303T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.457T>C
  hgvsp: ENSP00000408533.2:p.Cys153Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.941T>C
  hgvsp: ENSP00000346952.4:p.Met314Thr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.246T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.597T>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.938T>C
  hgvsp: ENSP00000361537.2:p.Met313Thr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.938T>C
  hgvsp: ENSP00000191018.5:p.Met313Thr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.992T>C
  hgvsp: ENSP00000361562.3:p.Met331Thr
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32692
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met331Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

20-44523530-T-TGTAACACCCTGGGTTTCAGCTTCCGGATTGCTGAAGGTCTGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523530
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523572
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: TGTAACACCCTGGGTTTCAGCTTCCGGATTGCTGAAGGTCTGG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsp: ENSP00000361562.3:p.Met331_Trp332insTer
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsp: ENSP00000361537.2:p.Met313_Trp314insTer
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsp: ENSP00000191018.5:p.Met313_Trp314insTer
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsp: ENSP00000346952.4:p.Met314_Trp315insTer
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met331_Trp332insTer
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

20-44523533-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523533
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523533
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.600G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.249G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.944G>C
  hgvsp: ENSP00000346952.4:p.Trp315Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.995G>C
  hgvsp: ENSP00000361562.3:p.Trp332Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.941G>C
  hgvsp: ENSP00000361537.2:p.Trp314Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.460G>C
  hgvsp: ENSP00000408533.2:p.Gly154Arg
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.941G>C
  hgvsp: ENSP00000191018.5:p.Trp314Ser
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*306G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32689
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53727
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp332Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-44523535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523535
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523535
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.943C>T
  hgvsp: ENSP00000191018.5:p.His315Tyr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.946C>T
  hgvsp: ENSP00000346952.4:p.His316Tyr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*308C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.251C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.943C>T
  hgvsp: ENSP00000361537.2:p.His315Tyr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.602C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.997C>T
  hgvsp: ENSP00000361562.3:p.His333Tyr
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.462C>T
  hgvsp: ENST00000419493.2:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His333Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

20-44523538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523538
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523538
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*311C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.946C>T
  hgvsp: ENSP00000361537.2:p.Gln316Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.949C>T
  hgvsp: ENSP00000346952.4:p.Gln317Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.254C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.946C>T
  hgvsp: ENSP00000191018.5:p.Gln316Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.605C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1000C>T
  hgvsp: ENSP00000361562.3:p.Gln334Ter
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.465C>T
  hgvsp: ENST00000419493.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln334Ter
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

20-44523543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523543
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523543
    reference: chr 20
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+3G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+3G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32689
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53728
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1002+3G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-44523545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523545
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523545
    reference: chr 20
allele count: 7
allele frequency: 5.766157597324503e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+5G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+5G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32691
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53727
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1002+5G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

20-44523547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523547
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523547
    reference: chr 20
allele count: 80113
allele frequency: 6.601812937783271e-1
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+7G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+7G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 8.75e1
  variant carriers: 3114
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 8.25e1
  variant carriers: 2680
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.75e1
  variant carriers: 2248
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 928
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 652
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 9.25e1
  variant carriers: 3297
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 7.25e1
  variant carriers: 1728
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 6.75e1
  variant carriers: 1280
genotype depth: GenotypeDepth
  all individuals: 35848
  bin: 9.75e1
  variant carriers: 35774
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.25e1
  variant carriers: 158
genotype quality: GenotypeQuality
  all individuals: 55608
  bin: 9.75e1
  variant carriers: 53253
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 1
hgvs: c.1002+7G>A
num of homozygotes: 26737
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

20-44523552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523552
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523552
    reference: chr 20
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+12C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+12C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10403
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

20-44523553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523553
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523553
    reference: chr 20
allele count: 4
allele frequency: 3.295381522795802e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+13G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+13G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

20-44523553-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523553
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523553
    reference: chr 20
allele count: 24
allele frequency: 1.977228913677481e-4
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+13G>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+13G>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-44523556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523556
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523556
    reference: chr 20
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+16G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+16G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24160
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-44523556-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523556
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523556
    reference: chr 20
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+16G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+16G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

20-44523562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523562
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523562
    reference: chr 20
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+22C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+22C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-44523565-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523565
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523565
    reference: chr 20
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+25C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+25C>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

20-44523572-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523572
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523572
    reference: chr 20
allele count: 3
allele frequency: 2.472758444470088e-5
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+32G>C
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+32G>C
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

20-44523575-GGGGGCAGGGGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523575
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523563
    reference: chr 20
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24121
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: GGGGGCAGGGGGA
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

20-44523579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523579
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523579
    reference: chr 20
allele count: 2
allele frequency: 1.648695881557688e-5
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.256+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1002+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.948+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.948+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.607+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.951+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*313+39G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.467+39G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

20-44523590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523590
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523590
    reference: chr 20
allele count: 3
allele frequency: 2.473737157181259e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*314-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1003-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.949-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.608-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.949-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.257-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.468-43G>A
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.952-43G>A
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24047
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

20-44523592-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523592
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523592
    reference: chr 20
allele count: 6
allele frequency: 4.948453608247422e-5
allele num: 121250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.468-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.952-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*314-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1003-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.949-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.949-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.257-41C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.608-41C>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24038
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-44523600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523600
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523600
    reference: chr 20
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.608-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.952-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.949-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*314-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.949-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.257-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1003-33C>T
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.468-33C>T
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

20-44523607-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44523607
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 44523607
    reference: chr 20
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000480961
  gene symbol: CTSA
  hgvsc: ENST00000480961.1:n.257-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361562
  ensembl transcript: ENST00000372484
  gene symbol: CTSA
  hgvsc: ENST00000372484.3:c.1003-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000476235
  ensembl transcript: ENST00000606788
  gene symbol: CTSA
  hgvsc: ENST00000606788.1:c.*314-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000346952
  ensembl transcript: ENST00000354880
  gene symbol: CTSA
  hgvsc: ENST00000354880.5:c.952-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl transcript: ENST00000493522
  gene symbol: CTSA
  hgvsc: ENST00000493522.2:n.608-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000191018
  ensembl transcript: ENST00000191018
  gene symbol: CTSA
  hgvsc: ENST00000191018.5:c.949-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000408533
  ensembl transcript: ENST00000419493
  gene symbol: CTSA
  hgvsc: ENST00000419493.2:c.468-26C>G
  variant of: http://identifiers.org/hgnc/9251
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064601
  ensembl protein: ENSP00000361537
  ensembl transcript: ENST00000372459
  gene symbol: CTSA
  hgvsc: ENST00000372459.2:c.949-26C>G
  variant of: http://identifiers.org/hgnc/9251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 14

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 33

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 45

GenotypeQuality
all individuals: 1009
bin: 6.75e1
variant carriers: 116

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 185

GenotypeQuality
all individuals: 832
bin: 7.75e1
variant carriers: 197

GenotypeQuality
all individuals: 54238
bin: 9.75e1
variant carriers: 50372

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 5

Other
type: Population
allele count: 562
allele frequency: 6.203090507726269e-1
allele num: 906
num of homozygotes: 179

Latino
type: Population
allele count: 9060
allele frequency: 7.834659287443791e-1
allele num: 11564
num of homozygotes: 3592

East Asian
type: Population
allele count: 5812
allele frequency: 6.739332096474954e-1
allele num: 8624
num of homozygotes: 1967

European (Non-Finnish)
type: Population
allele count: 40589
allele frequency: 6.090055215460329e-1
allele num: 66648
num of homozygotes: 12442

South Asian
type: Population
allele count: 9107
allele frequency: 5.51805622879302e-1
allele num: 16504
num of homozygotes: 2552

European (Finnish)
type: Population
allele count: 4635
allele frequency: 7.020599818236898e-1
allele num: 6602
num of homozygotes: 1634

African
type: Population
allele count: 6319
allele frequency: 6.07713021734949e-1
allele num: 10398
num of homozygotes: 1937

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.84e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 2.42e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 3.780005e6

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36708
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5751
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GenotypeQuality
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GenotypeQuality
all individuals: 944
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 3.393e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 3.877442e6

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 2239
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GenotypeQuality
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GenotypeQuality
all individuals: 1888
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2813
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1437
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variant carriers: 0

GenotypeQuality
all individuals: 8726
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.841e1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.534e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
type: SiteQuality
SIO_000300: 3.87768e6

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5786
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 945
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 36703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1881
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-2

DP
type: SiteQuality
SIO_000300: 3.87768e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
all individuals: 8795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 36710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

QD
type: SiteQuality
SIO_000300: 8.34e0

DP
type: SiteQuality
SIO_000300: 3.878281e6

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 1.639e0

MQ
type: SiteQuality
SIO_000300: 5.708e1

GenotypeQuality
all individuals: 36711
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5801
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
type: SiteQuality
SIO_000300: -7.598e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.234e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 3.878451e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.271e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36734
bin: 9.75e1
variant carriers: 224

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2245
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variant carriers: 0

GenotypeQuality
all individuals: 943
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8784
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variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 211
allele frequency: 2.027676340572747e-2
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.638562543192813e-4
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.971e0

FS
type: SiteQuality
SIO_000300: 1.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 3.883008e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
all individuals: 947
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 5808
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GenotypeQuality
all individuals: 2250
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

DP
type: SiteQuality
SIO_000300: 3.882566e6

FS
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 5808
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1887
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variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

DP
type: SiteQuality
SIO_000300: 3.883095e6

QD
type: SiteQuality
SIO_000300: 1.257e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

GenotypeQuality
all individuals: 5806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1429
bin: 9.25e1
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GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
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GenotypeQuality
all individuals: 8814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
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MQRankSum
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SIO_000300: -6.12e-1

DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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VQSLOD
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QD
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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East Asian
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Other
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
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Latino
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Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
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ClippingRankSum
type: SiteQuality
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FS
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

East Asian
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66738
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Other
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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ClippingRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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FS
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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ClippingRankSum
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FS
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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East Asian
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African
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South Asian
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European (Finnish)
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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FS
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 3.884489e6

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 3.322e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36721
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.884558e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 8.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 1.339e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 40

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 39
allele frequency: 2.361918604651163e-3
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 3.887198e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.644e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 1.102e0

QD
type: SiteQuality
SIO_000300: 1.3e1

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2805
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.421e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.886401e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 9.131e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.078e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2806
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GenotypeQuality
all individuals: 36723
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.193e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.886379e6

FS
type: SiteQuality
SIO_000300: 7.047e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.691e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.211e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.276e0

FS
type: SiteQuality
SIO_000300: 5.079e0

DP
type: SiteQuality
SIO_000300: 3.886728e6

MQ
type: SiteQuality
SIO_000300: 5.873e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.047e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.269e0

VQSLOD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 6.4e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 3.887591e6

MQ
type: SiteQuality
SIO_000300: 5.808e1

FS
type: SiteQuality
SIO_000300: 1.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.016e0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.945e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 3.888668e6

QD
type: SiteQuality
SIO_000300: 1.311e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 943
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8817
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.088745088976196e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 3.888668e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.311e1

GenotypeQuality
all individuals: 1887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.053e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

QD
type: SiteQuality
SIO_000300: 1.488e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

DP
type: SiteQuality
SIO_000300: 3.8897e6

FS
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.004e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 3.898879e6

GenotypeQuality
all individuals: 36362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.788013159776856e-5
allele num: 55928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

FS
type: SiteQuality
SIO_000300: 2.797e0

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

DP
type: SiteQuality
SIO_000300: 5.787875e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

GenotypeQuality
all individuals: 615
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 55126
bin: 9.75e1
variant carriers: 44835

Latino
type: Population
allele count: 7418
allele frequency: 6.409193018835321e-1
allele num: 11574
num of homozygotes: 2398

Other
type: Population
allele count: 447
allele frequency: 4.922907488986784e-1
allele num: 908
num of homozygotes: 115

East Asian
type: Population
allele count: 3921
allele frequency: 4.542400370713623e-1
allele num: 8632
num of homozygotes: 900

European (Finnish)
type: Population
allele count: 4048
allele frequency: 6.120350771091624e-1
allele num: 6614
num of homozygotes: 1256

European (Non-Finnish)
type: Population
allele count: 37158
allele frequency: 5.567909374250779e-1
allele num: 66736
num of homozygotes: 10487

South Asian
type: Population
allele count: 6151
allele frequency: 3.725169573643411e-1
allele num: 16512
num of homozygotes: 1178

African
type: Population
allele count: 2324
allele frequency: 2.233756247597078e-1
allele num: 10404
num of homozygotes: 280

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 6.001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.54e-2

QD
type: SiteQuality
SIO_000300: 1.943e1

DP
type: SiteQuality
SIO_000300: 9.32002e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 907
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variant carriers: 0

GenotypeQuality
all individuals: 985
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53505
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variant carriers: 1

GenotypeQuality
all individuals: 593
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variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

DP
type: SiteQuality
SIO_000300: 5.902125e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 8.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.012e0

MQ
type: SiteQuality
SIO_000300: 6.097e1

VQSLOD
type: SiteQuality
SIO_000300: -1.402e0

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53503
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 907
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variant carriers: 0

GenotypeQuality
all individuals: 769
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.446519015794048e-4
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.417e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.995e1

DP
type: SiteQuality
SIO_000300: 5.902134e6

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 1.779e0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
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variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 53494
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variant carriers: 1

GenotypeQuality
all individuals: 1775
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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QD
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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VQSLOD
type: SiteQuality
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele num: 11578
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South Asian
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allele frequency: 7.025193798449613e-3
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African
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Other
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European (Non-Finnish)
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allele frequency: 3.701150803164709e-3
allele num: 66736
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European (Finnish)
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allele frequency: 6.047777441790142e-4
allele num: 6614
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10404
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South Asian
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European (Non-Finnish)
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Latino
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Other
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East Asian
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European (Finnish)
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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BaseQRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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European (Finnish)
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ReadPosRankSum
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MQ
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FS
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DP
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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South Asian
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MQRankSum
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ClippingRankSum
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QD
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MQ
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FS
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9194
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European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.273723092599669e-4
allele num: 62808
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.865e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.898e0

FS
type: SiteQuality
SIO_000300: 6.9536e1

VQSLOD
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SIO_000300: -2.965e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

DP
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SIO_000300: 5.95421e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: -9.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.207e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.228501228501228e-3
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.362390739428301e-4
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.751369252324545e-4
allele num: 62808
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.810938065918146e-4
allele num: 5522
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.350663476180118e-4
allele num: 9194
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.07e-1

MQ
type: SiteQuality
SIO_000300: 5.865e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

ReadPosRankSum
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DP
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SIO_000300: 5.95421e6

ClippingRankSum
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SIO_000300: 1.69e0

QD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.207e0

VQSLOD
type: SiteQuality
SIO_000300: -2.965e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

South Asian
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allele count: 25
allele frequency: 1.514050387596899e-3
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.301e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

BaseQRankSum
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SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

DP
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SIO_000300: 5.977675e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.094e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.861e0

FS
type: SiteQuality
SIO_000300: 6.516e0

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

DP
type: SiteQuality
SIO_000300: 5.976847e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 5.976658e6

QD
type: SiteQuality
SIO_000300: 5.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 6.32e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.861e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.861e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQ
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ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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ReadPosRankSum
type: SiteQuality
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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Latino
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num of homozygotes: 0

DP
type: SiteQuality
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FS
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.976249e6

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-1

FS
type: SiteQuality
SIO_000300: 2.871e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.662e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.399e1

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

GenotypeQuality
all individuals: 1780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 557
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.832e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.01e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

DP
type: SiteQuality
SIO_000300: 5.97633e6

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 15

GenotypeQuality
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bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 660
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variant carriers: 15

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 7

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 26

GenotypeQuality
all individuals: 1496
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 967
bin: 6.75e1
variant carriers: 11

European (Non-Finnish)
type: Population
allele count: 41647
allele frequency: 6.242804892672983e-1
allele num: 66712
num of homozygotes: 13039

East Asian
type: Population
allele count: 5984
allele frequency: 6.932344763670065e-1
allele num: 8632
num of homozygotes: 2082

European (Finnish)
type: Population
allele count: 4654
allele frequency: 7.038717483363581e-1
allele num: 6612
num of homozygotes: 1646

Latino
type: Population
allele count: 9194
allele frequency: 7.947786998616874e-1
allele num: 11568
num of homozygotes: 3686

South Asian
type: Population
allele count: 11113
allele frequency: 6.730256782945736e-1
allele num: 16512
num of homozygotes: 3790

Other
type: Population
allele count: 586
allele frequency: 6.453744493392071e-1
allele num: 908
num of homozygotes: 192

African
type: Population
allele count: 6935
allele frequency: 6.664424370555448e-1
allele num: 10406
num of homozygotes: 2302

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 6.26001e6

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.715e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

QD
type: SiteQuality
SIO_000300: 2.416e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 3924
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 2.767864e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 4.716e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.359e1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3448
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2856
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 24178
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GenotypeQuality
all individuals: 4192
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variant carriers: 0

GenotypeQuality
all individuals: 10416
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496807266840543e-5
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.767856e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.26e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

VQSLOD
type: SiteQuality
SIO_000300: 5.57e0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 4192
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6625
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 24178
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 4955
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.912044237083118e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498935755613514e-4
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.479e1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.767856e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.26e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 4958
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3450
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.795e1

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.521e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.338e0

DP
type: SiteQuality
SIO_000300: 2.766217e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.33e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 3923
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.338e0

MQ
type: SiteQuality
SIO_000300: 5.795e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.766217e6

VQSLOD
type: SiteQuality
SIO_000300: -8.33e-1

FS
type: SiteQuality
SIO_000300: 1.521e0

QD
type: SiteQuality
SIO_000300: 1.4e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 24156
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GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.678e0

DP
type: SiteQuality
SIO_000300: 2.764994e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.983e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 2.207e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

QD
type: SiteQuality
SIO_000300: 2.135e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 6611
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.432e1

VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -2.18e-1

BaseQRankSum
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SIO_000300: -2.511e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 2.696e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

DP
type: SiteQuality
SIO_000300: 2.764025e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.500045000450004e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.76205e6

VQSLOD
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

QD
type: SiteQuality
SIO_000300: 1.564e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

QD
type: SiteQuality
SIO_000300: 6.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.76033e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.399e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.758862e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.56e0

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

DP
type: SiteQuality
SIO_000300: 2.754145e6

MQRankSum
type: SiteQuality
SIO_000300: -7.26e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.00792697573865e-5
allele num: 66608
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.343e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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DP
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VQSLOD
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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