17-16068275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068275
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068275
    reference: chr 17
allele count: 1
allele frequency: 8.825969532753173e-6
allele num: 113302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.618+18A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.291+18A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.893A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.618+18A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*376+18A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.618+18A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.351A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.618+18A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.618+18A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14647
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-16068278-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068278
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068278
    reference: chr 17
allele count: 1
allele frequency: 9.519639015288541e-6
allele num: 105046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*376+15T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.618+15T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.618+15T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.291+15T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.890T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.618+15T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.348T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.618+15T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.618+15T>G
  variant of: http://identifiers.org/hgnc/7672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10723
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

17-16068278-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068278
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068278
    reference: chr 17
allele count: 8166
allele frequency: 7.773737219884622e-2
allele num: 105046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.890T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.618+15T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.618+15T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*376+15T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.618+15T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.348T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.618+15T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.291+15T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.618+15T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.25e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 5.25e1
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 3.25e1
  variant carriers: 590
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 6.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.5e0
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 2.75e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 764
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.75e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.25e1
  variant carriers: 958
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 4.75e1
  variant carriers: 934
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 9.75e1
  variant carriers: 1114
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.25e1
  variant carriers: 417
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.75e1
  variant carriers: 795
genotype quality: GenotypeQuality
  all individuals: 11399
  bin: 6.25e1
  variant carriers: 327
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 2.25e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 339
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-16068280-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068280
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068280
    reference: chr 17
allele count: 1
allele frequency: 8.606888953918716e-6
allele num: 116186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.888G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.618+13G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.618+13G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.618+13G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.618+13G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.618+13G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.346G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.291+13G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*376+13G>T
  variant of: http://identifiers.org/hgnc/7672
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-16068287-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068287
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068287
    reference: chr 17
allele count: 8361
allele frequency: 8.801793835270338e-2
allele num: 94992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*376+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.339T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.618+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.618+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.618+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.618+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.291+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.618+6T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.881T>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 5.25e1
  variant carriers: 827
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 3.25e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 5.75e1
  variant carriers: 725
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 4.75e1
  variant carriers: 870
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 390
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 4.25e1
  variant carriers: 716
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 2.75e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.25e1
  variant carriers: 402
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.75e1
  variant carriers: 657
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 2.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 3.75e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 6.25e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 9.75e1
  variant carriers: 1339
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 7.25e1
  variant carriers: 323
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 8630
  bin: 6.25e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 4.75e1
  variant carriers: 331
hgvs: c.618+6T>A
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-16068307-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068307
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068307
    reference: chr 17
allele count: 1
allele frequency: 8.357849692431131e-6
allele num: 119648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.604C>G
  hgvsp: ENSP00000462308.1:p.Leu202Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.604C>G
  hgvsp: ENSP00000387727.1:p.Leu202Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.604C>G
  hgvsp: ENSP00000379192.1:p.Leu202Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*362C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.604C>G
  hgvsp: ENSP00000407998.1:p.Leu202Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.604C>G
  hgvsp: ENSP00000268712.2:p.Leu202Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.277C>G
  hgvsp: ENSP00000379189.1:p.Leu93Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.319C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.861C>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu202Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-16068340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068340
    reference: chr 17
allele count: 49085
allele frequency: 4.277187173231091e-1
allele num: 114760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.571G>A
  hgvsp: ENSP00000387727.1:p.Glu191Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.571G>A
  hgvsp: ENSP00000268712.2:p.Glu191Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.571G>A
  hgvsp: ENSP00000462308.1:p.Glu191Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.286G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.571G>A
  hgvsp: ENSP00000407998.1:p.Glu191Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.828G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.571G>A
  hgvsp: ENSP00000379192.1:p.Glu191Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*329G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.244G>A
  hgvsp: ENSP00000379189.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 9.75e1
  variant carriers: 11706
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 1493
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 5.25e1
  variant carriers: 2887
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 7.75e1
  variant carriers: 3641
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 7.25e1
  variant carriers: 4052
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.25e1
  variant carriers: 3842
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 6.75e1
  variant carriers: 3961
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 4.25e1
  variant carriers: 1845
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 9.25e1
  variant carriers: 2113
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 1163
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 8.25e1
  variant carriers: 3200
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.75e1
  variant carriers: 771
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 4.75e1
  variant carriers: 2313
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 5.75e1
  variant carriers: 3418
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 8.75e1
  variant carriers: 2802
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.75e1
  variant carriers: 303
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.75e1
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.75e1
  variant carriers: 351
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.5e0
  variant carriers: 252
hgvs: p.Glu191Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-16068341-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068341
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068341
    reference: chr 17
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.827A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.570A>G
  hgvsp: ENST00000411510.1:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.243A>G
  hgvsp: ENST00000395848.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*328A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.570A>G
  hgvsp: ENST00000395851.1:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.570A>G
  hgvsp: ENST00000268712.3:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.285A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.570A>G
  hgvsp: ENST00000582357.1:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.570A>G
  hgvsp: ENST00000436828.1:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg190Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

17-16068343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068343
    reference: chr 17
allele count: 49096
allele frequency: 4.285390080826773e-1
allele num: 114566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.825C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.568C>T
  hgvsp: ENSP00000387727.1:p.Arg190Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.241C>T
  hgvsp: ENSP00000379189.1:p.Arg81Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.568C>T
  hgvsp: ENSP00000407998.1:p.Arg190Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*326C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.283C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.568C>T
  hgvsp: ENSP00000379192.1:p.Arg190Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.568C>T
  hgvsp: ENSP00000268712.2:p.Arg190Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.568C>T
  hgvsp: ENSP00000462308.1:p.Arg190Ter
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: stop gained
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 9.75e1
  variant carriers: 12547
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.25e1
  variant carriers: 973
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 7.25e1
  variant carriers: 4053
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 3314
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 4.25e1
  variant carriers: 1697
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.75e1
  variant carriers: 682
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 4.75e1
  variant carriers: 2147
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 5.25e1
  variant carriers: 2738
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 6.75e1
  variant carriers: 3903
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 1419
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 8.25e1
  variant carriers: 3376
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 8.75e1
  variant carriers: 2913
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 6.25e1
  variant carriers: 3569
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.75e1
  variant carriers: 3727
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 9.25e1
  variant carriers: 2337
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.5e0
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 2.5e0
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 248
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.25e1
  variant carriers: 396
hgvs: p.Arg190Ter
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

17-16068347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068347
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068347
    reference: chr 17
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.564A>G
  hgvsp: ENST00000268712.3:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.279A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.564A>G
  hgvsp: ENST00000411510.1:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.564A>G
  hgvsp: ENST00000582357.1:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.564A>G
  hgvsp: ENST00000436828.1:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.564A>G
  hgvsp: ENST00000395851.1:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.237A>G
  hgvsp: ENST00000395848.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.821A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*322A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val188Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-16068352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068352
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068352
    reference: chr 17
allele count: 3
allele frequency: 2.473655568198684e-5
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.274C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.816C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.559C>T
  hgvsp: ENSP00000379192.1:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.559C>T
  hgvsp: ENSP00000268712.2:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*317C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.559C>T
  hgvsp: ENSP00000407998.1:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.559C>T
  hgvsp: ENSP00000462308.1:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.559C>T
  hgvsp: ENSP00000387727.1:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.232C>T
  hgvsp: ENSP00000379189.1:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg187Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-16068359-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068359
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068359
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.552T>C
  hgvsp: ENST00000582357.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.552T>C
  hgvsp: ENST00000411510.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.552T>C
  hgvsp: ENST00000268712.3:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.809T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.552T>C
  hgvsp: ENST00000395851.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*310T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.225T>C
  hgvsp: ENST00000395848.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.267T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.552T>C
  hgvsp: ENST00000436828.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53280
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser184Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

17-16068360-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068360
    reference: chr 17
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.551G>A
  hgvsp: ENSP00000387727.1:p.Ser184Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*309G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.551G>A
  hgvsp: ENSP00000379192.1:p.Ser184Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.224G>A
  hgvsp: ENSP00000379189.1:p.Ser75Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.551G>A
  hgvsp: ENSP00000462308.1:p.Ser184Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.808G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.551G>A
  hgvsp: ENSP00000407998.1:p.Ser184Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.266G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.551G>A
  hgvsp: ENSP00000268712.2:p.Ser184Asn
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser184Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

17-16068362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068362
    reference: chr 17
allele count: 48188
allele frequency: 4.234446397188049e-1
allele num: 113800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.549G>A
  hgvsp: ENST00000582357.1:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*307G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.549G>A
  hgvsp: ENST00000395851.1:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.222G>A
  hgvsp: ENST00000395848.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.264G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.549G>A
  hgvsp: ENST00000268712.3:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.549G>A
  hgvsp: ENST00000411510.1:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.806G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.549G>A
  hgvsp: ENST00000436828.1:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 7.25e1
  variant carriers: 3242
genotype depth: GenotypeDepth
  all individuals: 22121
  bin: 9.75e1
  variant carriers: 19692
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 2.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.25e1
  variant carriers: 1664
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 965
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 4.75e1
  variant carriers: 1336
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 6.25e1
  variant carriers: 2560
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 8.75e1
  variant carriers: 3472
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 2978
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 664
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 8.25e1
  variant carriers: 3528
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 7.75e1
  variant carriers: 3570
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 5.75e1
  variant carriers: 2121
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 9.25e1
  variant carriers: 3268
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.25e1
  variant carriers: 501
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.25e1
  variant carriers: 444
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 2.75e1
  variant carriers: 442
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 506
hgvs: p.Gln183Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-16068370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068370
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068370
    reference: chr 17
allele count: 11
allele frequency: 9.067677850136015e-5
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.214T>C
  hgvsp: ENST00000395848.1:c.214T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.256T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.541T>C
  hgvsp: ENST00000395851.1:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.541T>C
  hgvsp: ENST00000411510.1:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.541T>C
  hgvsp: ENST00000582357.1:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*299T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.798T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.541T>C
  hgvsp: ENST00000268712.3:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.541T>C
  hgvsp: ENST00000436828.1:c.541T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Leu181Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-16068371-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068371
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068371
    reference: chr 17
allele count: 52
allele frequency: 4.30784524894375e-4
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.540G>C
  hgvsp: ENSP00000268712.2:p.Glu180Asp
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.797G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.540G>C
  hgvsp: ENSP00000462308.1:p.Glu180Asp
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.540G>C
  hgvsp: ENSP00000387727.1:p.Glu180Asp
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*298G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.540G>C
  hgvsp: ENSP00000379192.1:p.Glu180Asp
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.540G>C
  hgvsp: ENSP00000407998.1:p.Glu180Asp
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.213G>C
  hgvsp: ENSP00000379189.1:p.Glu71Asp
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.255G>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21657
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 3
hgvs: p.Glu180Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

17-16068375-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068375
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068375
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.536A>T
  hgvsp: ENSP00000379192.1:p.Glu179Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.536A>T
  hgvsp: ENSP00000268712.2:p.Glu179Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.793A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.536A>T
  hgvsp: ENSP00000407998.1:p.Glu179Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.536A>T
  hgvsp: ENSP00000462308.1:p.Glu179Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*294A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.209A>T
  hgvsp: ENSP00000379189.1:p.Glu70Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.536A>T
  hgvsp: ENSP00000387727.1:p.Glu179Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.251A>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21647
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu179Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-16068377-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068377
    reference: chr 17
allele count: 142
allele frequency: 1.224180144142901e-3
allele num: 115996
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.534G>T
  hgvsp: ENSP00000268712.2:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.791G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.534G>T
  hgvsp: ENSP00000407998.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*292G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.249G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.207G>T
  hgvsp: ENSP00000379189.1:p.Lys69Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.534G>T
  hgvsp: ENSP00000379192.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.534G>T
  hgvsp: ENSP00000387727.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.534G>T
  hgvsp: ENSP00000462308.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 27665
  bin: 9.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 45901
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.75e1
  variant carriers: 11
hgvs: p.Lys178Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-16068377-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068377
    reference: chr 17
allele count: 49585
allele frequency: 4.274716369529984e-1
allele num: 115996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.207G>C
  hgvsp: ENSP00000379189.1:p.Lys69Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.534G>C
  hgvsp: ENSP00000387727.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.534G>C
  hgvsp: ENSP00000379192.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.534G>C
  hgvsp: ENSP00000407998.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*292G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.791G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.534G>C
  hgvsp: ENSP00000462308.1:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.534G>C
  hgvsp: ENSP00000268712.2:p.Lys178Asn
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.249G>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 6.75e1
  variant carriers: 2351
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 6.25e1
  variant carriers: 1980
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 632
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 1187
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 3318
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 3142
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 5.75e1
  variant carriers: 1674
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 9.25e1
  variant carriers: 3424
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 8.75e1
  variant carriers: 3376
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 7.25e1
  variant carriers: 2787
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27665
  bin: 9.75e1
  variant carriers: 25210
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 920
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 392
genotype quality: GenotypeQuality
  all individuals: 45901
  bin: 9.75e1
  variant carriers: 43996
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 398
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.75e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 326
hgvs: p.Lys178Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-16068377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068377
    reference: chr 17
allele count: 5
allele frequency: 4.310493465291906e-5
allele num: 115996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.534G>A
  hgvsp: ENST00000436828.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.534G>A
  hgvsp: ENST00000395851.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.249G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.207G>A
  hgvsp: ENST00000395848.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.791G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.534G>A
  hgvsp: ENST00000411510.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.534G>A
  hgvsp: ENST00000268712.3:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*292G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.534G>A
  hgvsp: ENST00000582357.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27665
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45901
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Lys178Lys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

17-16068383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068383
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068383
    reference: chr 17
allele count: 49940
allele frequency: 4.309556272760222e-1
allele num: 115882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.785C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.201C>T
  hgvsp: ENST00000395848.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.528C>T
  hgvsp: ENST00000582357.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.528C>T
  hgvsp: ENST00000268712.3:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*286C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.528C>T
  hgvsp: ENST00000436828.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.243C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.528C>T
  hgvsp: ENST00000411510.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.528C>T
  hgvsp: ENST00000395851.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 8.75e1
  variant carriers: 3269
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 8.25e1
  variant carriers: 3176
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 3336
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 6.25e1
  variant carriers: 1766
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 456
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 30780
  bin: 9.75e1
  variant carriers: 28113
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 980
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 7.75e1
  variant carriers: 2853
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 5.75e1
  variant carriers: 1400
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 713
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.25e1
  variant carriers: 2371
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 6.75e1
  variant carriers: 2048
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.25e1
  variant carriers: 389
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 46253
  bin: 9.75e1
  variant carriers: 44467
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.75e1
  variant carriers: 373
hgvs: p.Leu176Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

17-16068394-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068394
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068394
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.774C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.517C>A
  hgvsp: ENSP00000387727.1:p.Pro173Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*275C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.517C>A
  hgvsp: ENSP00000462308.1:p.Pro173Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.517C>A
  hgvsp: ENSP00000268712.2:p.Pro173Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.517C>A
  hgvsp: ENSP00000379192.1:p.Pro173Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.517C>A
  hgvsp: ENSP00000407998.1:p.Pro173Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.190C>A
  hgvsp: ENSP00000379189.1:p.Pro64Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.232C>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro173Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-16068396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068396
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068396
    reference: chr 17
allele count: 55120
allele frequency: 4.730843174951936e-1
allele num: 116512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.515C>T
  hgvsp: ENSP00000379192.1:p.Ser172Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.230C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.515C>T
  hgvsp: ENSP00000268712.2:p.Ser172Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.772C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.515C>T
  hgvsp: ENSP00000407998.1:p.Ser172Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*273C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.188C>T
  hgvsp: ENSP00000379189.1:p.Ser63Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.515C>T
  hgvsp: ENSP00000462308.1:p.Ser172Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.515C>T
  hgvsp: ENSP00000387727.1:p.Ser172Leu
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 1646
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 738
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 41527
  bin: 9.75e1
  variant carriers: 40152
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 7.75e1
  variant carriers: 1893
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.75e1
  variant carriers: 1258
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 8.25e1
  variant carriers: 2227
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 956
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 9.25e1
  variant carriers: 2859
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 8.75e1
  variant carriers: 2482
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.25e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 6.25e1
  variant carriers: 240
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 222
hgvs: p.Ser172Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

17-16068397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068397
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068397
    reference: chr 17
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.514T>C
  hgvsp: ENSP00000407998.1:p.Ser172Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.514T>C
  hgvsp: ENSP00000387727.1:p.Ser172Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*272T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.514T>C
  hgvsp: ENSP00000379192.1:p.Ser172Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.514T>C
  hgvsp: ENSP00000462308.1:p.Ser172Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.771T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.187T>C
  hgvsp: ENSP00000379189.1:p.Ser63Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.514T>C
  hgvsp: ENSP00000268712.2:p.Ser172Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.229T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser172Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-16068401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068401
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068401
    reference: chr 17
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.510T>C
  hgvsp: ENST00000436828.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.767T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.510T>C
  hgvsp: ENST00000268712.3:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.510T>C
  hgvsp: ENST00000582357.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*268T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.225T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.510T>C
  hgvsp: ENST00000395851.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.510T>C
  hgvsp: ENST00000411510.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.183T>C
  hgvsp: ENST00000395848.1:c.183T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 32698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn170Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

17-16068420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068420
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068420
    reference: chr 17
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.164C>A
  hgvsp: ENSP00000379189.1:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.491C>A
  hgvsp: ENSP00000387727.1:p.Pro164Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.206C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.748C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.491C>A
  hgvsp: ENSP00000462308.1:p.Pro164Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.491C>A
  hgvsp: ENSP00000407998.1:p.Pro164Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.491C>A
  hgvsp: ENSP00000268712.2:p.Pro164Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.491C>A
  hgvsp: ENSP00000379192.1:p.Pro164Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*249C>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro164Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-16068424-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068424
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068424
    reference: chr 17
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.487C>A
  hgvsp: ENSP00000462308.1:p.Gln163Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.160C>A
  hgvsp: ENSP00000379189.1:p.Gln54Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.744C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.487C>A
  hgvsp: ENSP00000387727.1:p.Gln163Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.202C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*245C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.487C>A
  hgvsp: ENSP00000407998.1:p.Gln163Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.487C>A
  hgvsp: ENSP00000268712.2:p.Gln163Lys
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.487C>A
  hgvsp: ENSP00000379192.1:p.Gln163Lys
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln163Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-16068429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068429
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068429
    reference: chr 17
allele count: 37
allele frequency: 3.053863550075108e-4
allele num: 121158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.739C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.482C>T
  hgvsp: ENSP00000407998.1:p.Ser161Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.482C>T
  hgvsp: ENSP00000462308.1:p.Ser161Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.482C>T
  hgvsp: ENSP00000379192.1:p.Ser161Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.155C>T
  hgvsp: ENSP00000379189.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.482C>T
  hgvsp: ENSP00000387727.1:p.Ser161Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.482C>T
  hgvsp: ENSP00000268712.2:p.Ser161Leu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.197C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*240C>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32723
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 3
hgvs: p.Ser161Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

17-16068431-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068431
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068431
    reference: chr 17
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.480T>A
  hgvsp: ENST00000395851.1:c.480T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.153T>A
  hgvsp: ENST00000395848.1:c.153T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.480T>A
  hgvsp: ENST00000268712.3:c.480T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.480T>A
  hgvsp: ENST00000436828.1:c.480T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.480T>A
  hgvsp: ENST00000582357.1:c.480T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.195T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.480T>A
  hgvsp: ENST00000411510.1:c.480T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*238T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.737T>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50100
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile160Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-16068432-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068432
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068432
    reference: chr 17
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.479T>C
  hgvsp: ENSP00000387727.1:p.Ile160Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.479T>C
  hgvsp: ENSP00000407998.1:p.Ile160Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.152T>C
  hgvsp: ENSP00000379189.1:p.Ile51Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.736T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.479T>C
  hgvsp: ENSP00000462308.1:p.Ile160Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.479T>C
  hgvsp: ENSP00000379192.1:p.Ile160Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.194T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.479T>C
  hgvsp: ENSP00000268712.2:p.Ile160Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*237T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32701
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile160Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

17-16068433-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068433
    reference: chr 17
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.193A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.735A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*236A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.151A>G
  hgvsp: ENSP00000379189.1:p.Ile51Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.478A>G
  hgvsp: ENSP00000379192.1:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.478A>G
  hgvsp: ENSP00000407998.1:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.478A>G
  hgvsp: ENSP00000268712.2:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.478A>G
  hgvsp: ENSP00000387727.1:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.478A>G
  hgvsp: ENSP00000462308.1:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32701
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile160Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-16068435-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068435
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068435
    reference: chr 17
allele count: 2
allele frequency: 1.650301179965344e-5
allele num: 121190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.149C>A
  hgvsp: ENSP00000379189.1:p.Pro50Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.476C>A
  hgvsp: ENSP00000387727.1:p.Pro159Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.476C>A
  hgvsp: ENSP00000268712.2:p.Pro159Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.476C>A
  hgvsp: ENSP00000379192.1:p.Pro159Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.733C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.476C>A
  hgvsp: ENSP00000462308.1:p.Pro159Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*234C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.476C>A
  hgvsp: ENSP00000407998.1:p.Pro159Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.191C>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32702
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro159Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-16068436-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068436
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068436
    reference: chr 17
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.475C>G
  hgvsp: ENSP00000462308.1:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*233C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.148C>G
  hgvsp: ENSP00000379189.1:p.Pro50Ala
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.475C>G
  hgvsp: ENSP00000387727.1:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.475C>G
  hgvsp: ENSP00000379192.1:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.475C>G
  hgvsp: ENSP00000407998.1:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.732C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.475C>G
  hgvsp: ENSP00000268712.2:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.190C>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro159Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

17-16068440-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068440
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068440
    reference: chr 17
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.471C>G
  hgvsp: ENST00000395851.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.186C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.471C>G
  hgvsp: ENST00000436828.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*229C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.471C>G
  hgvsp: ENST00000582357.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.471C>G
  hgvsp: ENST00000268712.3:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.728C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.471C>G
  hgvsp: ENST00000411510.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.144C>G
  hgvsp: ENST00000395848.1:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser157Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

17-16068442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068442
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068442
    reference: chr 17
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.469T>C
  hgvsp: ENSP00000379192.1:p.Ser157Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.142T>C
  hgvsp: ENSP00000379189.1:p.Ser48Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*227T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.469T>C
  hgvsp: ENSP00000462308.1:p.Ser157Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.469T>C
  hgvsp: ENSP00000407998.1:p.Ser157Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.469T>C
  hgvsp: ENSP00000268712.2:p.Ser157Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.184T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.469T>C
  hgvsp: ENSP00000387727.1:p.Ser157Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.726T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32701
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser157Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-16068443-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068443
    reference: chr 17
allele count: 2
allele frequency: 1.650110557407346e-5
allele num: 121204
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.468A>G
  hgvsp: ENST00000268712.3:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.141A>G
  hgvsp: ENST00000395848.1:c.141A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.468A>G
  hgvsp: ENST00000436828.1:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.468A>G
  hgvsp: ENST00000395851.1:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.468A>G
  hgvsp: ENST00000411510.1:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.468A>G
  hgvsp: ENST00000582357.1:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.725A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.183A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*226A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro156Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-16068446-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068446
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068446
    reference: chr 17
allele count: 2
allele frequency: 1.650137786505173e-5
allele num: 121202
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.465T>G
  hgvsp: ENST00000268712.3:c.465T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.465T>G
  hgvsp: ENST00000411510.1:c.465T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.180T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.138T>G
  hgvsp: ENST00000395848.1:c.138T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.465T>G
  hgvsp: ENST00000582357.1:c.465T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.465T>G
  hgvsp: ENST00000436828.1:c.465T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.465T>G
  hgvsp: ENST00000395851.1:c.465T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*223T>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.722T>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32699
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala155Ala
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-16068448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068448
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068448
    reference: chr 17
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.463G>A
  hgvsp: ENSP00000379192.1:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.463G>A
  hgvsp: ENSP00000387727.1:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.463G>A
  hgvsp: ENSP00000462308.1:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.136G>A
  hgvsp: ENSP00000379189.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.463G>A
  hgvsp: ENSP00000268712.2:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.720G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.463G>A
  hgvsp: ENSP00000407998.1:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.178G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*221G>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala155Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-16068449-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068449
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068449
    reference: chr 17
allele count: 7
allele frequency: 5.775672865888876e-5
allele num: 121198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.462A>G
  hgvsp: ENST00000436828.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*220A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.462A>G
  hgvsp: ENST00000411510.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.462A>G
  hgvsp: ENST00000395851.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.135A>G
  hgvsp: ENST00000395848.1:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.462A>G
  hgvsp: ENST00000582357.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.177A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.462A>G
  hgvsp: ENST00000268712.3:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.719A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32706
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu154Glu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-16068451-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068451
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068451
    reference: chr 17
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.717G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.460G>T
  hgvsp: ENSP00000407998.1:p.Glu154Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.460G>T
  hgvsp: ENSP00000462308.1:p.Glu154Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.460G>T
  hgvsp: ENSP00000387727.1:p.Glu154Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.133G>T
  hgvsp: ENSP00000379189.1:p.Glu45Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*218G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.460G>T
  hgvsp: ENSP00000268712.2:p.Glu154Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.460G>T
  hgvsp: ENSP00000379192.1:p.Glu154Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.175G>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32702
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu154Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-16068454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068454
    reference: chr 17
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.130C>T
  hgvsp: ENSP00000379189.1:p.His44Tyr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.172C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.457C>T
  hgvsp: ENSP00000379192.1:p.His153Tyr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.457C>T
  hgvsp: ENSP00000407998.1:p.His153Tyr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.457C>T
  hgvsp: ENSP00000268712.2:p.His153Tyr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.457C>T
  hgvsp: ENSP00000387727.1:p.His153Tyr
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*215C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.714C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.457C>T
  hgvsp: ENSP00000462308.1:p.His153Tyr
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32703
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His153Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

17-16068457-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068457
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068457
    reference: chr 17
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.169A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.454A>C
  hgvsp: ENSP00000379192.1:p.Lys152Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.127A>C
  hgvsp: ENSP00000379189.1:p.Lys43Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.454A>C
  hgvsp: ENSP00000387727.1:p.Lys152Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.454A>C
  hgvsp: ENSP00000268712.2:p.Lys152Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.711A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*212A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.454A>C
  hgvsp: ENSP00000462308.1:p.Lys152Gln
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.454A>C
  hgvsp: ENSP00000407998.1:p.Lys152Gln
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32703
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys152Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

17-16068457-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068457
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068458
    reference: chr 17
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*211dupC
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.126dupC
  hgvsp: ENSP00000379189.1:p.Lys43GlnfsTer3
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.453dupC
  hgvsp: ENSP00000407998.1:p.Lys152GlnfsTer3
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.710dupC
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.453dupC
  hgvsp: ENSP00000379192.1:p.Lys152GlnfsTer3
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.453dupC
  hgvsp: ENSP00000387727.1:p.Lys152GlnfsTer3
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.453dupC
  hgvsp: ENSP00000462308.1:p.Lys152GlnfsTer3
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.453dupC
  hgvsp: ENSP00000268712.2:p.Lys152GlnfsTer3
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.168dupC
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32703
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys152GlnfsTer3
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-16068458-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068458
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068458
    reference: chr 17
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.453C>A
  hgvsp: ENST00000436828.1:c.453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.710C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.453C>A
  hgvsp: ENST00000395851.1:c.453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.126C>A
  hgvsp: ENST00000395848.1:c.126C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*211C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.453C>A
  hgvsp: ENST00000582357.1:c.453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.453C>A
  hgvsp: ENST00000411510.1:c.453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.168C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.453C>A
  hgvsp: ENST00000268712.3:c.453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32704
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly151Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

17-16068460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068460
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068460
    reference: chr 17
allele count: 5
allele frequency: 4.126297720633139e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.166G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.451G>A
  hgvsp: ENSP00000268712.2:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.124G>A
  hgvsp: ENSP00000379189.1:p.Gly42Ser
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.451G>A
  hgvsp: ENSP00000379192.1:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.451G>A
  hgvsp: ENSP00000387727.1:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.708G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.451G>A
  hgvsp: ENSP00000462308.1:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.451G>A
  hgvsp: ENSP00000407998.1:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 32703
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly151Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-16068463-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068463
    reference: chr 17
allele count: 2
allele frequency: 1.747243723026925e-5
allele num: 114466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*206G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.448G>T
  hgvsp: ENSP00000407998.1:p.Gly150Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.448G>T
  hgvsp: ENSP00000387727.1:p.Gly150Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.448G>T
  hgvsp: ENSP00000379192.1:p.Gly150Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.705G>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.121G>T
  hgvsp: ENSP00000379189.1:p.Gly41Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.448G>T
  hgvsp: ENSP00000268712.2:p.Gly150Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.448G>T
  hgvsp: ENSP00000462308.1:p.Gly150Ter
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.163G>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: stop gained
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39185
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly150Ter
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

17-16068463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068463
    reference: chr 17
allele count: 36591
allele frequency: 3.19666975346391e-1
allele num: 114466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.448G>A
  hgvsp: ENSP00000462308.1:p.Gly150Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.121G>A
  hgvsp: ENSP00000379189.1:p.Gly41Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.163G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.448G>A
  hgvsp: ENSP00000379192.1:p.Gly150Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.448G>A
  hgvsp: ENSP00000387727.1:p.Gly150Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.705G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.448G>A
  hgvsp: ENSP00000268712.2:p.Gly150Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.448G>A
  hgvsp: ENSP00000407998.1:p.Gly150Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*206G>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.25e1
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 672
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 5.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 4.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.25e1
  variant carriers: 946
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 8.75e1
  variant carriers: 848
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 551
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 39185
  bin: 9.75e1
  variant carriers: 32656
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 6.75e1
  variant carriers: 365
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.25e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 39511
  bin: 9.75e1
  variant carriers: 31469
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.75e1
  variant carriers: 361
hgvs: p.Gly150Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-16068464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068464
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068464
    reference: chr 17
allele count: 4
allele frequency: 3.305457310018841e-5
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.447C>T
  hgvsp: ENST00000395851.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.704C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.447C>T
  hgvsp: ENST00000582357.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.120C>T
  hgvsp: ENST00000395848.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.447C>T
  hgvsp: ENST00000411510.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.447C>T
  hgvsp: ENST00000436828.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.447C>T
  hgvsp: ENST00000268712.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.162C>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Phe149Phe
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

17-16068467-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068467
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068467
    reference: chr 17
allele count: 2
allele frequency: 1.653876686954221e-5
allele num: 120928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.159A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.444A>G
  hgvsp: ENST00000582357.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.444A>G
  hgvsp: ENST00000395851.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.444A>G
  hgvsp: ENST00000436828.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.701A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.444A>G
  hgvsp: ENST00000268712.3:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*202A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.444A>G
  hgvsp: ENST00000411510.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.117A>G
  hgvsp: ENST00000395848.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala148Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

17-16068469-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068469
    reference: chr 17
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.442G>C
  hgvsp: ENSP00000407998.1:p.Ala148Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.442G>C
  hgvsp: ENSP00000462308.1:p.Ala148Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.699G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*200G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.442G>C
  hgvsp: ENSP00000387727.1:p.Ala148Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.442G>C
  hgvsp: ENSP00000379192.1:p.Ala148Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.442G>C
  hgvsp: ENSP00000268712.2:p.Ala148Pro
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.157G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.115G>C
  hgvsp: ENSP00000379189.1:p.Ala39Pro
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala148Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-16068471-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068471
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068471
    reference: chr 17
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.440C>G
  hgvsp: ENSP00000407998.1:p.Pro147Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.155C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.440C>G
  hgvsp: ENSP00000379192.1:p.Pro147Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.440C>G
  hgvsp: ENSP00000268712.2:p.Pro147Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.440C>G
  hgvsp: ENSP00000387727.1:p.Pro147Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.697C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.113C>G
  hgvsp: ENSP00000379189.1:p.Pro38Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.440C>G
  hgvsp: ENSP00000462308.1:p.Pro147Arg
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*198C>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro147Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

17-16068473-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068473
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068473
    reference: chr 17
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*196T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.438T>A
  hgvsp: ENSP00000462308.1:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.153T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.111T>A
  hgvsp: ENSP00000379189.1:p.Asp37Glu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.438T>A
  hgvsp: ENSP00000379192.1:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.438T>A
  hgvsp: ENSP00000407998.1:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.695T>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.438T>A
  hgvsp: ENSP00000268712.2:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.438T>A
  hgvsp: ENSP00000387727.1:p.Asp146Glu
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp146Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-16068474-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068474
    reference: chr 17
allele count: 186
allele frequency: 1.541623843782117e-3
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.437A>T
  hgvsp: ENSP00000379192.1:p.Asp146Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.437A>T
  hgvsp: ENSP00000462308.1:p.Asp146Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.437A>T
  hgvsp: ENSP00000268712.2:p.Asp146Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.110A>T
  hgvsp: ENSP00000379189.1:p.Asp37Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.437A>T
  hgvsp: ENSP00000387727.1:p.Asp146Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.437A>T
  hgvsp: ENSP00000407998.1:p.Asp146Val
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*195A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.152A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.694A>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 9.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 6
hgvs: p.Asp146Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-16068476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068476
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068476
    reference: chr 17
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-1G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-1G>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: c.436-1G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

17-16068480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068480
    reference: chr 17
allele count: 3
allele frequency: 2.488016055996948e-5
allele num: 120578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-5T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-5T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
hgvs: c.436-5T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-16068481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068481
    reference: chr 17
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-6C>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-6C>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
hgvs: c.436-6C>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

17-16068481-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068481
    reference: chr 17
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-6C>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-6C>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
hgvs: c.436-6C>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

17-16068483-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068483
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068483
    reference: chr 17
allele count: 2
allele frequency: 1.660191918185742e-5
allele num: 120468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-8C>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-8C>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 9.25e1
  variant carriers: 0
hgvs: c.436-8C>A
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

17-16068486-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068486
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068486
    reference: chr 17
allele count: 3
allele frequency: 2.493848507016027e-5
allele num: 120296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-11A>T
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-11A>T
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-16068487-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068487
    reference: chr 17
allele count: 1
allele frequency: 8.332638946754437e-6
allele num: 120010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-12T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-12T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-16068492-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068492
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068492
    reference: chr 17
allele count: 16
allele frequency: 1.333978089409881e-4
allele num: 119942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-17G>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-17G>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7642
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6710
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-16068504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068504
    reference: chr 17
allele count: 2
allele frequency: 1.679204728640516e-5
allele num: 119104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-29A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-29A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31137
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-16068506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068506
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068506
    reference: chr 17
allele count: 57396
allele frequency: 4.947589821391628e-1
allele num: 116008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-31A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-31A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 5393
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.75e1
  variant carriers: 7398
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.25e1
  variant carriers: 5974
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.75e1
  variant carriers: 646
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 4.25e1
  variant carriers: 7743
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.25e1
  variant carriers: 1288
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 9.75e1
  variant carriers: 4075
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 5.75e1
  variant carriers: 3946
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 2078
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 4.75e1
  variant carriers: 6929
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 779
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 6.25e1
  variant carriers: 2701
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 2.75e1
  variant carriers: 3963
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 994
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 549
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 1849
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 6.25e1
  variant carriers: 274
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.75e1
  variant carriers: 354
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 250
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.5e0
  variant carriers: 42
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

17-16068506-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068506
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068506
    reference: chr 17
allele count: 1
allele frequency: 8.62009516585063e-6
allele num: 116008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-31A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-31A>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-16068508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068508
    reference: chr 17
allele count: 2
allele frequency: 1.693222032205083e-5
allele num: 118118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-33A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-33A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11390
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

17-16068515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068515
    reference: chr 17
allele count: 1
allele frequency: 8.495887990212738e-6
allele num: 117704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-40G>A
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-40G>A
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16285
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

17-16068516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068516
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068516
    reference: chr 17
allele count: 1
allele frequency: 8.495310588555118e-6
allele num: 117712
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-41A>G
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-41A>G
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

17-16068516-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068516
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068516
    reference: chr 17
allele count: 1
allele frequency: 8.495310588555118e-6
allele num: 117712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-41A>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-41A>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

17-16068517-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068517
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068517
    reference: chr 17
allele count: 1
allele frequency: 8.498053945646446e-6
allele num: 117674
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-42T>C
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-42T>C
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6119
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

17-16068519-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16068519
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 16068520
    reference: chr 17
allele count: 1
allele frequency: 8.502678343678259e-6
allele num: 117610
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000585296
  gene symbol: NCOR1
  hgvsc: ENST00000585296.1:n.693-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000268712
  ensembl transcript: ENST00000268712
  gene symbol: NCOR1
  hgvsc: ENST00000268712.3:c.436-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462794
  ensembl transcript: ENST00000460276
  gene symbol: NCOR1
  hgvsc: ENST00000460276.1:c.*194-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl transcript: ENST00000579974
  gene symbol: NCOR1
  hgvsc: ENST00000579974.1:n.151-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379192
  ensembl transcript: ENST00000395851
  gene symbol: NCOR1
  hgvsc: ENST00000395851.1:c.436-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000462308
  ensembl transcript: ENST00000582357
  gene symbol: NCOR1
  hgvsc: ENST00000582357.1:c.436-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000407998
  ensembl transcript: ENST00000411510
  gene symbol: NCOR1
  hgvsc: ENST00000411510.1:c.436-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000387727
  ensembl transcript: ENST00000436828
  gene symbol: NCOR1
  hgvsc: ENST00000436828.1:c.436-45dupT
  variant of: http://identifiers.org/hgnc/7672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141027
  ensembl protein: ENSP00000379189
  ensembl transcript: ENST00000395848
  gene symbol: NCOR1
  hgvsc: ENST00000395848.1:c.109-45dupT
  variant of: http://identifiers.org/hgnc/7672
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 4877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5500031000062e-5
allele num: 64516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.742e1

DP
type: SiteQuality
SIO_000300: 2.319382e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.435e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 1114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59976
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.45e0

MQ
type: SiteQuality
SIO_000300: 5.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

FS
type: SiteQuality
SIO_000300: 2.3453e1

MQRankSum
type: SiteQuality
SIO_000300: -3.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.67e-2

QD
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.587741e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

GenotypeQuality
all individuals: 3896
bin: 7.25e1
variant carriers: 311

GenotypeQuality
all individuals: 1352
bin: 4.75e1
variant carriers: 333

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 317

GenotypeQuality
all individuals: 1793
bin: 8.75e1
variant carriers: 245

GenotypeQuality
all individuals: 1309
bin: 7.5e0
variant carriers: 229

GenotypeQuality
all individuals: 1207
bin: 2.75e1
variant carriers: 281

GenotypeQuality
all individuals: 3029
bin: 2.5e0
variant carriers: 203

GenotypeQuality
all individuals: 5889
bin: 6.75e1
variant carriers: 333

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 271

GenotypeQuality
all individuals: 1475
bin: 5.75e1
variant carriers: 338

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 277

GenotypeQuality
all individuals: 10723
bin: 9.75e1
variant carriers: 3807

GenotypeQuality
all individuals: 3732
bin: 7.75e1
variant carriers: 320

GenotypeQuality
all individuals: 1307
bin: 3.75e1
variant carriers: 337

European (Non-Finnish)
type: Population
allele count: 3666
allele frequency: 6.112444977991197e-2
allele num: 59976
num of homozygotes: 0

African
type: Population
allele count: 981
allele frequency: 1.043839114705256e-1
allele num: 9398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 617
allele frequency: 1.026964047936085e-1
allele num: 6008
num of homozygotes: 0

Latino
type: Population
allele count: 619
allele frequency: 6.048465897987102e-2
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 1909
allele frequency: 1.801963375495564e-1
allele num: 10594
num of homozygotes: 0

East Asian
type: Population
allele count: 306
allele frequency: 3.789004457652303e-2
allele num: 8076
num of homozygotes: 0

Other
type: Population
allele count: 68
allele frequency: 8.947368421052632e-2
allele num: 760
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.529e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 2.3453e1

MQRankSum
type: SiteQuality
SIO_000300: -3.089e0

VQSLOD
type: SiteQuality
SIO_000300: -2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.67e-2

DP
type: SiteQuality
SIO_000300: 2.587741e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2045
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20683
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.667e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 2.593786e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.19e-1

QD
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 1549
bin: 7.5e0
variant carriers: 232

GenotypeQuality
all individuals: 2156
bin: 2.25e1
variant carriers: 303

GenotypeQuality
all individuals: 2400
bin: 8.25e1
variant carriers: 280

GenotypeQuality
all individuals: 1689
bin: 5.25e1
variant carriers: 322

GenotypeQuality
all individuals: 1615
bin: 3.25e1
variant carriers: 332

GenotypeQuality
all individuals: 1472
bin: 8.75e1
variant carriers: 247

GenotypeQuality
all individuals: 3038
bin: 7.25e1
variant carriers: 296

GenotypeQuality
all individuals: 1537
bin: 2.75e1
variant carriers: 297

GenotypeQuality
all individuals: 1607
bin: 4.25e1
variant carriers: 340

GenotypeQuality
all individuals: 9934
bin: 9.75e1
variant carriers: 3775

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 322

GenotypeQuality
all individuals: 7975
bin: 2.5e0
variant carriers: 195

GenotypeQuality
all individuals: 1492
bin: 1.25e1
variant carriers: 260

GenotypeQuality
all individuals: 1705
bin: 5.75e1
variant carriers: 345

GenotypeQuality
all individuals: 2959
bin: 7.75e1
variant carriers: 309

GenotypeQuality
all individuals: 1567
bin: 9.25e1
variant carriers: 276

South Asian
type: Population
allele count: 2092
allele frequency: 2.101245480112495e-1
allele num: 9956
num of homozygotes: 0

Latino
type: Population
allele count: 618
allele frequency: 6.928251121076233e-2
allele num: 8920
num of homozygotes: 0

East Asian
type: Population
allele count: 299
allele frequency: 4.075790621592149e-2
allele num: 7336
num of homozygotes: 0

African
type: Population
allele count: 975
allele frequency: 1.148139425341498e-1
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 70
allele frequency: 9.668508287292818e-2
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3687
allele frequency: 6.786805581121379e-2
allele num: 54326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 620
allele frequency: 1.183657884688813e-1
allele num: 5238
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -3.835e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.379e1

DP
type: SiteQuality
SIO_000300: 2.95728e6

VQSLOD
type: SiteQuality
SIO_000300: -2.776e0

FS
type: SiteQuality
SIO_000300: 3.1195e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.177e-1

GenotypeQuality
all individuals: 1803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511990081345066e-5
allele num: 66138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.3e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.383e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 7.417e0

DP
type: SiteQuality
SIO_000300: 2.94694e6

MQRankSum
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.678e0

GenotypeQuality
all individuals: 658
bin: 5.75e1
variant carriers: 348

GenotypeQuality
all individuals: 789
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variant carriers: 460

GenotypeQuality
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bin: 6.75e1
variant carriers: 430

GenotypeQuality
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variant carriers: 401

GenotypeQuality
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GenotypeQuality
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variant carriers: 348

GenotypeQuality
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variant carriers: 218

GenotypeQuality
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GenotypeQuality
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variant carriers: 397

GenotypeQuality
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variant carriers: 252

GenotypeQuality
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variant carriers: 398

GenotypeQuality
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variant carriers: 43905

GenotypeQuality
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variant carriers: 376

GenotypeQuality
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variant carriers: 328

GenotypeQuality
all individuals: 668
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variant carriers: 244

GenotypeQuality
all individuals: 580
bin: 1.75e1
variant carriers: 190

Other
type: Population
allele count: 369
allele frequency: 4.290697674418605e-1
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 4151
allele frequency: 4.136110003985652e-1
allele num: 10036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26105
allele frequency: 4.161353057450743e-1
allele num: 62732
num of homozygotes: 0

South Asian
type: Population
allele count: 7423
allele frequency: 4.696317853979501e-1
allele num: 15806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2902
allele frequency: 4.56002514142049e-1
allele num: 6364
num of homozygotes: 0

East Asian
type: Population
allele count: 3224
allele frequency: 4.020952856073834e-1
allele num: 8018
num of homozygotes: 0

Latino
type: Population
allele count: 4911
allele frequency: 4.487390350877193e-1
allele num: 10944
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.699e0

MQRankSum
type: SiteQuality
SIO_000300: -3.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.247e0

MQ
type: SiteQuality
SIO_000300: 4.666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.785e-1

QD
type: SiteQuality
SIO_000300: 4.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2988e2

FS
type: SiteQuality
SIO_000300: 6.575700000000001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 4.830638e6

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
all individuals: 690
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 569
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GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.881e0

DP
type: SiteQuality
SIO_000300: 4.806531e6

QD
type: SiteQuality
SIO_000300: 1.063e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 7.583e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.41e0

MQ
type: SiteQuality
SIO_000300: 4.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 349

GenotypeQuality
all individuals: 592
bin: 4.75e1
variant carriers: 256

GenotypeQuality
all individuals: 574
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variant carriers: 354

GenotypeQuality
all individuals: 689
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GenotypeQuality
all individuals: 709
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variant carriers: 400

GenotypeQuality
all individuals: 1128
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variant carriers: 426

GenotypeQuality
all individuals: 610
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variant carriers: 220

GenotypeQuality
all individuals: 681
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variant carriers: 325

GenotypeQuality
all individuals: 563
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variant carriers: 185

GenotypeQuality
all individuals: 668
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variant carriers: 301

GenotypeQuality
all individuals: 691
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variant carriers: 353

GenotypeQuality
all individuals: 678
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variant carriers: 380

GenotypeQuality
all individuals: 620
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variant carriers: 405

GenotypeQuality
all individuals: 45344
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variant carriers: 43906

GenotypeQuality
all individuals: 774
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variant carriers: 453

GenotypeQuality
all individuals: 1893
bin: 6.25e1
variant carriers: 252

Other
type: Population
allele count: 369
allele frequency: 4.280742459396752e-1
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 3228
allele frequency: 4.024937655860349e-1
allele num: 8020
num of homozygotes: 0

African
type: Population
allele count: 4154
allele frequency: 4.139924257524417e-1
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26105
allele frequency: 4.173327791277657e-1
allele num: 62552
num of homozygotes: 0

Latino
type: Population
allele count: 4912
allele frequency: 4.491587417702999e-1
allele num: 10936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2903
allele frequency: 4.568775574441297e-1
allele num: 6354
num of homozygotes: 0

South Asian
type: Population
allele count: 7425
allele frequency: 4.696988866396761e-1
allele num: 15808
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.802e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 4.943432e6

FS
type: SiteQuality
SIO_000300: 6.2516e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3227e2

QD
type: SiteQuality
SIO_000300: 4.63e0

MQ
type: SiteQuality
SIO_000300: 4.656e1

GenotypeQuality
all individuals: 865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 488
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GenotypeQuality
all individuals: 63
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.16e0

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQ
type: SiteQuality
SIO_000300: 4.799e1

DP
type: SiteQuality
SIO_000300: 4.936074e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 59
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819284414796847e-4
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.898e0

MQ
type: SiteQuality
SIO_000300: 4.448e1

FS
type: SiteQuality
SIO_000300: 3.893e0

DP
type: SiteQuality
SIO_000300: 4.937105e6

VQSLOD
type: SiteQuality
SIO_000300: -2.702e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 6.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 4.937282e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 884
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GenotypeQuality
all individuals: 53280
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -2.295e0

MQRankSum
type: SiteQuality
SIO_000300: -1.324e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 4.93747e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e0

MQ
type: SiteQuality
SIO_000300: 4.68e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 2.406e0

GenotypeQuality
all individuals: 803
bin: 9.25e1
variant carriers: 520

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 517

GenotypeQuality
all individuals: 1177
bin: 2.5e0
variant carriers: 299

GenotypeQuality
all individuals: 836
bin: 4.75e1
variant carriers: 474

GenotypeQuality
all individuals: 846
bin: 7.5e0
variant carriers: 414

GenotypeQuality
all individuals: 1211
bin: 6.75e1
variant carriers: 510

GenotypeQuality
all individuals: 910
bin: 3.75e1
variant carriers: 485

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 524

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 545

GenotypeQuality
all individuals: 891
bin: 5.25e1
variant carriers: 512

GenotypeQuality
all individuals: 42460
bin: 9.75e1
variant carriers: 40765

GenotypeQuality
all individuals: 909
bin: 3.25e1
variant carriers: 485

GenotypeQuality
all individuals: 817
bin: 5.75e1
variant carriers: 475

GenotypeQuality
all individuals: 920
bin: 2.25e1
variant carriers: 443

GenotypeQuality
all individuals: 885
bin: 1.75e1
variant carriers: 441

GenotypeQuality
all individuals: 1793
bin: 6.25e1
variant carriers: 485

European (Non-Finnish)
type: Population
allele count: 25626
allele frequency: 4.117155618392725e-1
allele num: 62242
num of homozygotes: 0

Other
type: Population
allele count: 368
allele frequency: 4.269141531322506e-1
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 4800
allele frequency: 4.414199006805223e-1
allele num: 10874
num of homozygotes: 0

South Asian
type: Population
allele count: 7300
allele frequency: 4.639044229791561e-1
allele num: 15736
num of homozygotes: 0

African
type: Population
allele count: 4146
allele frequency: 4.214271193331978e-1
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2818
allele frequency: 4.465927099841521e-1
allele num: 6310
num of homozygotes: 0

East Asian
type: Population
allele count: 3130
allele frequency: 3.943058704963467e-1
allele num: 7938
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.49e0

DP
type: SiteQuality
SIO_000300: 5.706387e6

FS
type: SiteQuality
SIO_000300: 6.441500000000001e1

MQ
type: SiteQuality
SIO_000300: 4.613e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2914e2

QD
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.757e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55548
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.663435909861885e-4
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.253e0

MQ
type: SiteQuality
SIO_000300: 4.618e1

VQSLOD
type: SiteQuality
SIO_000300: -5.555e0

FS
type: SiteQuality
SIO_000300: 2.5354e1

DP
type: SiteQuality
SIO_000300: 5.645034e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

QD
type: SiteQuality
SIO_000300: 6.3e-1

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1448
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54818
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.064664419246092e-4
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 6.338665861756716e-4
allele num: 66260
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.933488012374323e-4
allele num: 10344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: -2.372e0

MQ
type: SiteQuality
SIO_000300: 4.697e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 5.650615e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.904e0

FS
type: SiteQuality
SIO_000300: 3.7421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55576
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 4.876e1

QD
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 5.650108e6

VQSLOD
type: SiteQuality
SIO_000300: -9.627000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 3.886e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 623
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 670
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 635
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 756
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 706
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 892
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1651
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 704
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 645
bin: 7.5e0
variant carriers: 14

GenotypeQuality
all individuals: 676
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 619
bin: 5.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.252740369558409e-3
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 115
allele frequency: 1.80749402741104e-3
allele num: 63624
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.321112515802782e-4
allele num: 11074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.919979869149472e-4
allele num: 15896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.142864e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2931e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.101e0

QD
type: SiteQuality
SIO_000300: 3.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.483e0

MQRankSum
type: SiteQuality
SIO_000300: -3.789e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.983e-1

MQ
type: SiteQuality
SIO_000300: 4.867e1

FS
type: SiteQuality
SIO_000300: 5.3289e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 676
bin: 4.75e1
variant carriers: 381

GenotypeQuality
all individuals: 662
bin: 3.75e1
variant carriers: 338

GenotypeQuality
all individuals: 619
bin: 5.75e1
variant carriers: 363

GenotypeQuality
all individuals: 645
bin: 7.5e0
variant carriers: 328

GenotypeQuality
all individuals: 635
bin: 4.25e1
variant carriers: 355

GenotypeQuality
all individuals: 670
bin: 5.25e1
variant carriers: 376

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 425

GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 401

GenotypeQuality
all individuals: 704
bin: 8.75e1
variant carriers: 379

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 348

GenotypeQuality
all individuals: 756
bin: 2.5e0
variant carriers: 230

GenotypeQuality
all individuals: 623
bin: 1.25e1
variant carriers: 308

GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 338

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 396

GenotypeQuality
all individuals: 1651
bin: 6.25e1
variant carriers: 371

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 395

European (Finnish)
type: Population
allele count: 2774
allele frequency: 4.343877231443783e-1
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 374
allele frequency: 4.259681093394078e-1
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 7254
allele frequency: 4.56341217916457e-1
allele num: 15896
num of homozygotes: 0

East Asian
type: Population
allele count: 3318
allele frequency: 4.080177078209543e-1
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 4352
allele frequency: 4.349390365780532e-1
allele num: 10006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26613
allele frequency: 4.182855526216522e-1
allele num: 63624
num of homozygotes: 0

Latino
type: Population
allele count: 4900
allele frequency: 4.424778761061947e-1
allele num: 11074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2931e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.101e0

MQRankSum
type: SiteQuality
SIO_000300: -3.789e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.983e-1

FS
type: SiteQuality
SIO_000300: 5.3289e1

MQ
type: SiteQuality
SIO_000300: 4.867e1

QD
type: SiteQuality
SIO_000300: 3.84e0

DP
type: SiteQuality
SIO_000300: 6.142864e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.483e0

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.258178158027177e-4
allele num: 15896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.459419576979833e-4
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571733936879165e-5
allele num: 63624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 3.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.483e0

FS
type: SiteQuality
SIO_000300: 5.3289e1

MQRankSum
type: SiteQuality
SIO_000300: -3.789e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2931e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.983e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.101e0

DP
type: SiteQuality
SIO_000300: 6.142864e6

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 354

GenotypeQuality
all individuals: 662
bin: 1.75e1
variant carriers: 329

GenotypeQuality
all individuals: 651
bin: 3.25e1
variant carriers: 325

GenotypeQuality
all individuals: 876
bin: 2.5e0
variant carriers: 227

GenotypeQuality
all individuals: 588
bin: 1.25e1
variant carriers: 279

GenotypeQuality
all individuals: 653
bin: 3.75e1
variant carriers: 344

GenotypeQuality
all individuals: 670
bin: 9.25e1
variant carriers: 361

GenotypeQuality
all individuals: 616
bin: 7.5e0
variant carriers: 317

GenotypeQuality
all individuals: 1574
bin: 6.25e1
variant carriers: 355

GenotypeQuality
all individuals: 719
bin: 2.25e1
variant carriers: 354

GenotypeQuality
all individuals: 824
bin: 7.75e1
variant carriers: 406

GenotypeQuality
all individuals: 770
bin: 8.25e1
variant carriers: 383

GenotypeQuality
all individuals: 807
bin: 7.25e1
variant carriers: 361

GenotypeQuality
all individuals: 663
bin: 4.75e1
variant carriers: 359

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 322

GenotypeQuality
all individuals: 1124
bin: 6.75e1
variant carriers: 419

African
type: Population
allele count: 4357
allele frequency: 4.374497991967872e-1
allele num: 9960
num of homozygotes: 0

Latino
type: Population
allele count: 4920
allele frequency: 4.444444444444444e-1
allele num: 11070
num of homozygotes: 0

Other
type: Population
allele count: 376
allele frequency: 4.302059496567506e-1
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 7263
allele frequency: 4.56964892412231e-1
allele num: 15894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26889
allele frequency: 4.22676685110664e-1
allele num: 63616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2809
allele frequency: 4.393181107288083e-1
allele num: 6394
num of homozygotes: 0

East Asian
type: Population
allele count: 3326
allele frequency: 4.119395590785236e-1
allele num: 8074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.571e0

MQRankSum
type: SiteQuality
SIO_000300: -4.138e0

MQ
type: SiteQuality
SIO_000300: 4.943e1

FS
type: SiteQuality
SIO_000300: 4.7391e1

QD
type: SiteQuality
SIO_000300: 3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.129e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1662e2

DP
type: SiteQuality
SIO_000300: 6.377537e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.463e0

QD
type: SiteQuality
SIO_000300: 3.24e0

DP
type: SiteQuality
SIO_000300: 6.312594e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.041e0

MQ
type: SiteQuality
SIO_000300: 4.802e1

FS
type: SiteQuality
SIO_000300: 1.0507e1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

GenotypeQuality
all individuals: 313
bin: 9.25e1
variant carriers: 242

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 239

GenotypeQuality
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GenotypeQuality
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variant carriers: 191

GenotypeQuality
all individuals: 348
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variant carriers: 195

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 239

Latino
type: Population
allele count: 5450
allele frequency: 4.837564352920291e-1
allele num: 11266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30050
allele frequency: 4.704132748904196e-1
allele num: 63880
num of homozygotes: 0

African
type: Population
allele count: 4606
allele frequency: 4.704800817160368e-1
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 7745
allele frequency: 4.83036048397156e-1
allele num: 16034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3040
allele frequency: 4.745551045894474e-1
allele num: 6406
num of homozygotes: 0

East Asian
type: Population
allele count: 3823
allele frequency: 4.629450230079922e-1
allele num: 8258
num of homozygotes: 0

Other
type: Population
allele count: 406
allele frequency: 4.624145785876993e-1
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.5858e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.483000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.948e0

VQSLOD
type: SiteQuality
SIO_000300: 1.187e2

DP
type: SiteQuality
SIO_000300: 7.388925e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 4.49e0

MQRankSum
type: SiteQuality
SIO_000300: -4.156e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.411e0

MQ
type: SiteQuality
SIO_000300: 4.744e1

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1623
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variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.817e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQ
type: SiteQuality
SIO_000300: 5.065e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

DP
type: SiteQuality
SIO_000300: 6.388804e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.28e-1

GenotypeQuality
all individuals: 691
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 3280
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.884e0

FS
type: SiteQuality
SIO_000300: 4.42e0

MQ
type: SiteQuality
SIO_000300: 4.802e1

VQSLOD
type: SiteQuality
SIO_000300: -3.376e0

DP
type: SiteQuality
SIO_000300: 6.388383e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.63e0

QD
type: SiteQuality
SIO_000300: 8.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 691
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 1268
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.723842862699339e-5
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.939e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

DP
type: SiteQuality
SIO_000300: 6.387023e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.771e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 1.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.496e1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

QD
type: SiteQuality
SIO_000300: 9.6e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.179e0

DP
type: SiteQuality
SIO_000300: 6.386775e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.575566597988123e-3
allele num: 16502
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 3
allele frequency: 2.91601866251944e-4
allele num: 10288
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Latino
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allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.505704335294824e-5
allele num: 66616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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SIO_000300: 4.791e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.941370607649e-4
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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FS
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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SIO_000300: 4.614e1

MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: 4.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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FS
type: SiteQuality
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.940993788819876e-4
allele num: 10304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.99e0

MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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SIO_000300: 6.387347e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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Other
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East Asian
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South Asian
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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QD
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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FS
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InbreedingCoeff
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QD
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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SIO_000300: -6.99e-1

MQ
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ReadPosRankSum
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SIO_000300: 1.98e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.5008254539997e-5
allele num: 66630
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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MQ
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SIO_000300: 4.784e1

MQRankSum
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ReadPosRankSum
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QD
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 4.240882103477523e-4
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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European (Non-Finnish)
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MQ
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SIO_000300: 4.841e1

MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66630
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African
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Other
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European (Finnish)
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Latino
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

South Asian
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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Other
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South Asian
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VQSLOD
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QD
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DP
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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East Asian
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South Asian
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African
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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South Asian
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39511
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1548
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63084
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.84331797235023e-4
allele num: 10850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15668
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 2.662e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.588e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.732924e6

MQRankSum
type: SiteQuality
SIO_000300: -3.179e0

QD
type: SiteQuality
SIO_000300: 3.06e0

MQ
type: SiteQuality
SIO_000300: 4.807e1

GenotypeQuality
all individuals: 1625
bin: 7.75e1
variant carriers: 358

GenotypeQuality
all individuals: 704
bin: 3.25e1
variant carriers: 347

GenotypeQuality
all individuals: 1064
bin: 8.75e1
variant carriers: 327

GenotypeQuality
all individuals: 706
bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 304

GenotypeQuality
all individuals: 679
bin: 7.5e0
variant carriers: 300

GenotypeQuality
all individuals: 636
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GenotypeQuality
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bin: 1.75e1
variant carriers: 334

GenotypeQuality
all individuals: 687
bin: 1.25e1
variant carriers: 314

GenotypeQuality
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bin: 2.25e1
variant carriers: 326

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 342

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 356

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 335

GenotypeQuality
all individuals: 1846
bin: 6.75e1
variant carriers: 340

European (Non-Finnish)
type: Population
allele count: 22139
allele frequency: 3.509447720499651e-1
allele num: 63084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2200
allele frequency: 3.492063492063492e-1
allele num: 6300
num of homozygotes: 0

South Asian
type: Population
allele count: 5077
allele frequency: 3.240362522338525e-1
allele num: 15668
num of homozygotes: 0

Latino
type: Population
allele count: 2486
allele frequency: 2.291244239631336e-1
allele num: 10850
num of homozygotes: 0

Other
type: Population
allele count: 250
allele frequency: 2.927400468384075e-1
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 1969
allele frequency: 2.404738641914997e-1
allele num: 8188
num of homozygotes: 0

African
type: Population
allele count: 2470
allele frequency: 2.593992858643142e-1
allele num: 9522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.732924e6

MQRankSum
type: SiteQuality
SIO_000300: -3.179e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: 5.54e1

FS
type: SiteQuality
SIO_000300: 2.662e0

MQ
type: SiteQuality
SIO_000300: 4.807e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.588e-1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8126
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GenotypeQuality
all individuals: 14
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75609756097561e-5
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007609251406057e-5
allele num: 66498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.065e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -3.652e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.0975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 4.602e1

DP
type: SiteQuality
SIO_000300: 3.311827e6

MQRankSum
type: SiteQuality
SIO_000300: -4.123e0

GenotypeQuality
all individuals: 8009
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1986
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 541
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GenotypeQuality
all individuals: 2
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.787e0

VQSLOD
type: SiteQuality
SIO_000300: -3.802e0

MQ
type: SiteQuality
SIO_000300: 4.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

DP
type: SiteQuality
SIO_000300: 3.309118e6

MQRankSum
type: SiteQuality
SIO_000300: -3.423e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

GenotypeQuality
all individuals: 1985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31247
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variant carriers: 1

GenotypeQuality
all individuals: 4304
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 7972
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 56
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 2165
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.166e0

DP
type: SiteQuality
SIO_000300: 3.307961e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.592e0

MQRankSum
type: SiteQuality
SIO_000300: -1.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.5759e1

MQ
type: SiteQuality
SIO_000300: 4.815e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 1981
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GenotypeQuality
all individuals: 4284
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 8
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4231
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.131e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.86e-1

QD
type: SiteQuality
SIO_000300: 2.71e0

VQSLOD
type: SiteQuality
SIO_000300: -3.565e0

FS
type: SiteQuality
SIO_000300: 1.207e0

DP
type: SiteQuality
SIO_000300: 3.305353e6

MQ
type: SiteQuality
SIO_000300: 4.682e1

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
all individuals: 74
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.304735e6

MQRankSum
type: SiteQuality
SIO_000300: -2.038e0

QD
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 4.688e1

VQSLOD
type: SiteQuality
SIO_000300: -2.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

GenotypeQuality
all individuals: 2171
bin: 8.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 116

GenotypeQuality
all individuals: 45
bin: 3.25e1
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GenotypeQuality
all individuals: 7846
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 11
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variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 167
allele frequency: 1.665004985044865e-2
allele num: 10030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.644536652835408e-4
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.205327547761104e-4
allele num: 66372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.085e0

DP
type: SiteQuality
SIO_000300: 3.305733e6

MQ
type: SiteQuality
SIO_000300: 4.79e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.108e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1988
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 3.274471e6

MQ
type: SiteQuality
SIO_000300: 5.136e1

VQSLOD
type: SiteQuality
SIO_000300: -1.519e0

QD
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.733e1

FS
type: SiteQuality
SIO_000300: 7.078e0

VQSLOD
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DP
type: SiteQuality
SIO_000300: 3.269085e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.065e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

InbreedingCoeff
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QD
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.168e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 4.892e1

FS
type: SiteQuality
SIO_000300: 3.168e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.268802e6

VQSLOD
type: SiteQuality
SIO_000300: -1.878e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50993537476596e-5
allele num: 66228
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 3.264669e6

MQ
type: SiteQuality
SIO_000300: 4.842e1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.484e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.024345985180705e-5
allele num: 66130
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515427047341941e-5
allele num: 65988
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 6.681e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.2e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 16
allele frequency: 9.707559762164785e-4
allele num: 16482
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 1.055520371543171e-4
allele num: 9474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528210770829513e-5
allele num: 65436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.204348e6

MQ
type: SiteQuality
SIO_000300: 4.517e1

QD
type: SiteQuality
SIO_000300: 6.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 354

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 245

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 162

GenotypeQuality
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bin: 3.75e1
variant carriers: 250

GenotypeQuality
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bin: 6.75e1
variant carriers: 316

GenotypeQuality
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bin: 3.25e1
variant carriers: 213

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 128

GenotypeQuality
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bin: 1.25e1
variant carriers: 90

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 261

GenotypeQuality
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bin: 5.75e1
variant carriers: 260

GenotypeQuality
all individuals: 399
bin: 8.75e1
variant carriers: 393

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 376

GenotypeQuality
all individuals: 53410
bin: 9.75e1
variant carriers: 53390

GenotypeQuality
all individuals: 362
bin: 7.25e1
variant carriers: 357

African
type: Population
allele count: 4641
allele frequency: 4.982821558943526e-1
allele num: 9314
num of homozygotes: 0

East Asian
type: Population
allele count: 4161
allele frequency: 4.927759355755566e-1
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 7790
allele frequency: 4.928508161457674e-1
allele num: 15806
num of homozygotes: 0

Other
type: Population
allele count: 427
allele frequency: 4.930715935334873e-1
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31558
allele frequency: 4.949653376831143e-1
allele num: 63758
num of homozygotes: 0

Latino
type: Population
allele count: 5641
allele frequency: 4.956070989281322e-1
allele num: 11382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3178
allele frequency: 4.936315625970799e-1
allele num: 6438
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5247e2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.233e-1

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -3.055e0

FS
type: SiteQuality
SIO_000300: 3.014e0

MQ
type: SiteQuality
SIO_000300: 4.363e1

DP
type: SiteQuality
SIO_000300: 3.084365e6

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.073652566029633e-4
allele num: 9314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63758
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 3.014e0

MQRankSum
type: SiteQuality
SIO_000300: -3.055e0

MQ
type: SiteQuality
SIO_000300: 4.363e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

DP
type: SiteQuality
SIO_000300: 3.084365e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.233e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5247e2

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

GenotypeQuality
all individuals: 2110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
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variant carriers: 0

GenotypeQuality
all individuals: 19805
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223840411210378e-4
allele num: 16342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.15e0

DP
type: SiteQuality
SIO_000300: 2.129891e6

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e0

VQSLOD
type: SiteQuality
SIO_000300: -4.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 4.233e1

GenotypeQuality
all individuals: 669
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2240
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.743e0

FS
type: SiteQuality
SIO_000300: 3.683e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 2.080907e6

MQ
type: SiteQuality
SIO_000300: 4.12e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

QD
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
all individuals: 2242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11373
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.445e0

DP
type: SiteQuality
SIO_000300: 2.079761e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 6.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.915e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQ
type: SiteQuality
SIO_000300: 4.131e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
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variant carriers: 0

GenotypeQuality
all individuals: 11373
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.445e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.131e1

VQSLOD
type: SiteQuality
SIO_000300: -2.915e0

QD
type: SiteQuality
SIO_000300: 6.1e0

DP
type: SiteQuality
SIO_000300: 2.079761e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 2766
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15098
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547604308530395e-5
allele num: 64616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.257e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 5.315e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

DP
type: SiteQuality
SIO_000300: 2.068135e6

MQ
type: SiteQuality
SIO_000300: 3.945e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3