19-55670825-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670825
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670825
    reference: chr 19
allele count: 38874
allele frequency: 3.244258245426626e-1
allele num: 119824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-8A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-8A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.436T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-8A>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 2.25e1
  variant carriers: 834
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 3.25e1
  variant carriers: 715
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.25e1
  variant carriers: 541
genotype depth: GenotypeDepth
  all individuals: 15622
  bin: 2.75e1
  variant carriers: 886
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 24058
  bin: 9.75e1
  variant carriers: 24018
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 496
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 1
hgvs: c.1440-8A>G
num of homozygotes: 7758
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-55670829-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670829
    reference: chr 19
allele count: 1
allele frequency: 8.42715566641947e-6
allele num: 118664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.440A>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-12T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-12T>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

19-55670832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670832
    reference: chr 19
allele count: 34
allele frequency: 2.874389192296637e-4
allele num: 118286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.443C>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-15G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-15G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-15G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23291
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9062
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-55670833-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670833
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670833
    reference: chr 19
allele count: 1
allele frequency: 8.462527926342156e-6
allele num: 118168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-16C>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.444G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-16C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-16C>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6349
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

19-55670837-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670837
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670837
    reference: chr 19
allele count: 1
allele frequency: 8.476012883539584e-6
allele num: 117980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.448T>C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-20A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-20A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-20A>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-55670838-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670838
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670838
    reference: chr 19
allele count: 1
allele frequency: 8.481188723411473e-6
allele num: 117908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-21C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.449G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-21C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-21C>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-55670840-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670841
    reference: chr 19
allele count: 1
allele frequency: 8.497620666213461e-6
allele num: 117680
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.452dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-24dupT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-24dupT
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-55670840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670840
    reference: chr 19
allele count: 6
allele frequency: 5.098572399728076e-5
allele num: 117680
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.451C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-23G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-23G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-23G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-55670847-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670847
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670847
    reference: chr 19
allele count: 103
allele frequency: 8.785697226108022e-4
allele num: 117236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-30G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-30G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.458C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-30G>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22750
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

19-55670854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670854
    reference: chr 19
allele count: 2
allele frequency: 1.711361730528982e-5
allele num: 116866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1027-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.465T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1001-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.223-37A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.324-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1077-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1380-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1239-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.238-37A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1440-37A>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

19-55670859-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670859
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670859
    reference: chr 19
allele count: 3
allele frequency: 2.57762961180898e-5
allele num: 116386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.470C>G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+42G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+42G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+42G>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-55670859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670859
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670859
    reference: chr 19
allele count: 12
allele frequency: 1.031051844723592e-4
allele num: 116386
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.470C>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+42G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+42G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+42G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-55670865-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670865
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670865
    reference: chr 19
allele count: 1
allele frequency: 8.636921110362578e-6
allele num: 115782
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.476C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+36G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+36G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+36G>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

19-55670869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670869
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670869
    reference: chr 19
allele count: 2
allele frequency: 1.728877439878287e-5
allele num: 115682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+32C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.480G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+32C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+32C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-55670871-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670871
    reference: chr 19
allele count: 23
allele frequency: 1.989309623069072e-4
allele num: 115618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.482T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+30A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+30A>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+30A>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-55670881-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670881
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670881
    reference: chr 19
allele count: 1
allele frequency: 8.69837514352319e-6
allele num: 114964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+20G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.492C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+20G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+20G>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37196
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-55670881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670881
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670881
    reference: chr 19
allele count: 2
allele frequency: 1.739675028704638e-5
allele num: 114964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.492C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+20G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+20G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-55670886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670886
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670886
    reference: chr 19
allele count: 1
allele frequency: 8.717179817985285e-6
allele num: 114716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.497A>G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+15T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+15T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+15T>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-55670892-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670892
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670892
    reference: chr 19
allele count: 4
allele frequency: 3.486142583231654e-5
allele num: 114740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222+9G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.503C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000+9G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026+9G>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8979
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 37204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-55670901-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670901
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670901
    reference: chr 19
allele count: 3
allele frequency: 2.618349392542941e-5
allele num: 114576
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222G>T
  hgvsp: ENSP00000473050.1:p.Arg75Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237G>T
  hgvsp: ENSP00000472645.1:p.Arg80Leu
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238G>T
  hgvsp: ENSP00000432046.2:p.Arg413Leu
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439G>T
  hgvsp: ENSP00000436975.2:p.Arg480Leu
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076G>T
  hgvsp: ENSP00000394343.1:p.Arg359Leu
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379G>T
  hgvsp: ENSP00000375600.5:p.Arg460Leu
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.512C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg480Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

19-55670901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670901
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670901
    reference: chr 19
allele count: 1
allele frequency: 8.72783130847647e-6
allele num: 114576
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1439G>A
  hgvsp: ENSP00000436975.2:p.Arg480Gln
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.222G>A
  hgvsp: ENSP00000473050.1:p.Arg75Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1379G>A
  hgvsp: ENSP00000375600.5:p.Arg460Gln
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1076G>A
  hgvsp: ENSP00000394343.1:p.Arg359Gln
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1238G>A
  hgvsp: ENSP00000432046.2:p.Arg413Gln
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.512C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1026G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.1000G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.237G>A
  hgvsp: ENSP00000472645.1:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.323G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg480Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-55670902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670902
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670902
    reference: chr 19
allele count: 2
allele frequency: 1.744591765526867e-5
allele num: 114640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.999C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.513G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1237C>T
  hgvsp: ENSP00000432046.2:p.Arg413Trp
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1075C>T
  hgvsp: ENSP00000394343.1:p.Arg359Trp
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.221C>T
  hgvsp: ENSP00000473050.1:p.Arg75Trp
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1025C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.236C>T
  hgvsp: ENSP00000472645.1:p.Arg80Trp
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1378C>T
  hgvsp: ENSP00000375600.5:p.Arg460Trp
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1438C>T
  hgvsp: ENSP00000436975.2:p.Arg480Trp
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.322C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg480Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-55670912-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670912
    reference: chr 19
allele count: 1
allele frequency: 8.714596949891067e-6
allele num: 114750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1428G>T
  hgvsp: ENST00000527223.2:c.1428G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1015G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1227G>T
  hgvsp: ENST00000524407.2:c.1227G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.523C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.989G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1065G>T
  hgvsp: ENST00000455045.1:c.1065G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1368G>T
  hgvsp: ENST00000391720.4:c.1368G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.211G>T
  hgvsp: ENST00000587871.1:c.211G>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.312G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.226G>T
  hgvsp: ENST00000588076.1:c.226G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val476Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-55670912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670912
    reference: chr 19
allele count: 3
allele frequency: 2.61437908496732e-5
allele num: 114750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1065G>A
  hgvsp: ENST00000455045.1:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1428G>A
  hgvsp: ENST00000527223.2:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.523C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1227G>A
  hgvsp: ENST00000524407.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1368G>A
  hgvsp: ENST00000391720.4:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.211G>A
  hgvsp: ENST00000587871.1:c.211G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.226G>A
  hgvsp: ENST00000588076.1:c.226G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.312G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1015G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.989G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val476Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

19-55670916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670916
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670916
    reference: chr 19
allele count: 4
allele frequency: 3.481530480799359e-5
allele num: 114892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1061T>C
  hgvsp: ENSP00000394343.1:p.Ile354Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1011T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.207T>C
  hgvsp: ENSP00000473050.1:p.Ile70Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.308T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.527A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.222T>C
  hgvsp: ENSP00000472645.1:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.985T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1364T>C
  hgvsp: ENSP00000375600.5:p.Ile455Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1223T>C
  hgvsp: ENSP00000432046.2:p.Ile408Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1424T>C
  hgvsp: ENSP00000436975.2:p.Ile475Thr
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile475Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

19-55670918-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670918
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670918
    reference: chr 19
allele count: 1
allele frequency: 8.709284096847239e-6
allele num: 114820
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.529C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*1009G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1362G>C
  hgvsp: ENSP00000375600.5:p.Leu454Phe
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1059G>C
  hgvsp: ENSP00000394343.1:p.Leu353Phe
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.205G>C
  hgvsp: ENSP00000473050.1:p.Leu69Phe
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.983G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.306G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1221G>C
  hgvsp: ENSP00000432046.2:p.Leu407Phe
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1422G>C
  hgvsp: ENSP00000436975.2:p.Leu474Phe
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.220G>C
  hgvsp: ENSP00000472645.1:p.Leu74Phe
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu474Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

19-55670929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670929
    reference: chr 19
allele count: 9
allele frequency: 7.817114268839245e-5
allele num: 115132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.194G>A
  hgvsp: ENSP00000473050.1:p.Gly66Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.972G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.295G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1411G>A
  hgvsp: ENSP00000436975.2:p.Gly471Arg
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1351G>A
  hgvsp: ENSP00000375600.5:p.Gly451Arg
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1210G>A
  hgvsp: ENSP00000432046.2:p.Gly404Arg
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*998G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1048G>A
  hgvsp: ENSP00000394343.1:p.Gly350Arg
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.540C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.209G>A
  hgvsp: ENSP00000472645.1:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly471Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-55670930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670930
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670930
    reference: chr 19
allele count: 2
allele frequency: 1.73460537727667e-5
allele num: 115300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.971C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.193C>T
  hgvsp: ENST00000587871.1:c.193C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.208C>T
  hgvsp: ENST00000588076.1:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1410C>T
  hgvsp: ENST00000527223.2:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1350C>T
  hgvsp: ENST00000391720.4:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1047C>T
  hgvsp: ENST00000455045.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*997C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1209C>T
  hgvsp: ENST00000524407.2:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.294C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.541G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro470Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55670934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670934
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670934
    reference: chr 19
allele count: 3
allele frequency: 2.598257435346694e-5
allele num: 115462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.204C>T
  hgvsp: ENSP00000472645.1:p.Ala69Val
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*993C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1205C>T
  hgvsp: ENSP00000432046.2:p.Ala402Val
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1043C>T
  hgvsp: ENSP00000394343.1:p.Ala348Val
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.967C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.290C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.189C>T
  hgvsp: ENSP00000473050.1:p.Ala64Val
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1346C>T
  hgvsp: ENSP00000375600.5:p.Ala449Val
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1406C>T
  hgvsp: ENSP00000436975.2:p.Ala469Val
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.545G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8958
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala469Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-55670935-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670935
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670935
    reference: chr 19
allele count: 1
allele frequency: 8.663409224798143e-6
allele num: 115428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1345G>C
  hgvsp: ENSP00000375600.5:p.Ala449Pro
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.188G>C
  hgvsp: ENSP00000473050.1:p.Ala64Pro
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*992G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1204G>C
  hgvsp: ENSP00000432046.2:p.Ala402Pro
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.289G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.966G>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1042G>C
  hgvsp: ENSP00000394343.1:p.Ala348Pro
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1405G>C
  hgvsp: ENSP00000436975.2:p.Ala469Pro
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.203G>C
  hgvsp: ENSP00000472645.1:p.Ala69Pro
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.546C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala469Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-55670940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670940
    reference: chr 19
allele count: 1
allele frequency: 8.635280301198577e-6
allele num: 115804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1037G>A
  hgvsp: ENSP00000394343.1:p.Cys346Tyr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.551C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.961G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1340G>A
  hgvsp: ENSP00000375600.5:p.Cys447Tyr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.183G>A
  hgvsp: ENSP00000473050.1:p.Cys62Tyr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.198G>A
  hgvsp: ENSP00000472645.1:p.Cys67Tyr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*987G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1400G>A
  hgvsp: ENSP00000436975.2:p.Cys467Tyr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1199G>A
  hgvsp: ENSP00000432046.2:p.Cys400Tyr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.284G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys467Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

19-55670954-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670954
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670954
    reference: chr 19
allele count: 2
allele frequency: 1.713384963333562e-5
allele num: 116728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1023T>C
  hgvsp: ENST00000455045.1:c.1023T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.184T>C
  hgvsp: ENST00000588076.1:c.184T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.169T>C
  hgvsp: ENST00000587871.1:c.169T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.565A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.270T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1185T>C
  hgvsp: ENST00000524407.2:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1386T>C
  hgvsp: ENST00000527223.2:c.1386T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1326T>C
  hgvsp: ENST00000391720.4:c.1326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*973T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.947T>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro462Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-55670960-G-GAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670960
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670963
    reference: chr 19
allele count: 1
allele frequency: 8.543649505322693e-6
allele num: 117046
alternate allele: GAGA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*964_*966dupTCT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1176_1178dupTCT
  hgvsp: ENSP00000432046.2:p.Leu393dup
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1014_1016dupTCT
  hgvsp: ENSP00000394343.1:p.Leu339dup
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.160_162dupTCT
  hgvsp: ENSP00000473050.1:p.Leu55dup
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.175_177dupTCT
  hgvsp: ENSP00000472645.1:p.Leu60dup
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.938_940dupTCT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1317_1319dupTCT
  hgvsp: ENSP00000375600.5:p.Leu440dup
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.261_263dupTCT
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.575_577dupAGA
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1377_1379dupTCT
  hgvsp: ENSP00000436975.2:p.Leu460dup
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu460dup
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

19-55670973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670973
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670973
    reference: chr 19
allele count: 1
allele frequency: 8.509479560230096e-6
allele num: 117516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1166T>C
  hgvsp: ENSP00000432046.2:p.Met389Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1004T>C
  hgvsp: ENSP00000394343.1:p.Met335Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1367T>C
  hgvsp: ENSP00000436975.2:p.Met456Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1307T>C
  hgvsp: ENSP00000375600.5:p.Met436Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.584A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.150T>C
  hgvsp: ENSP00000473050.1:p.Met51Thr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.165T>C
  hgvsp: ENSP00000472645.1:p.Met56Thr
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*954T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.928T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.251T>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met456Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-55670976-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670976
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670976
    reference: chr 19
allele count: 1
allele frequency: 8.510058889607517e-6
allele num: 117508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-1G>T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-1G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.587C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.248G>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1365-1G>T
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-55670980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670980
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670980
    reference: chr 19
allele count: 2
allele frequency: 1.701982809973619e-5
allele num: 117510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.244T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.591A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-5T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-5T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1365-5T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-55670983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670983
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670983
    reference: chr 19
allele count: 6
allele frequency: 5.108643825352497e-5
allele num: 117448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.241C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-8C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-8C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.594G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1365-8C>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-55670988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670988
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670988
    reference: chr 19
allele count: 2
allele frequency: 1.702475399230481e-5
allele num: 117476
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.236G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-13G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-13G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.599C>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8948
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-55670989-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670989
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670989
    reference: chr 19
allele count: 11581
allele frequency: 9.828066125801962e-2
allele num: 117836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-14C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-14C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-14C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.600G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-14C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-14C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-14C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-14C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.235C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-14C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 730
genotype depth: GenotypeDepth
  all individuals: 22754
  bin: 2.75e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.25e1
  variant carriers: 738
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 10926
  bin: 3.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 2.25e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.75e1
  variant carriers: 663
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.25e1
  variant carriers: 769
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.25e1
  variant carriers: 572
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.75e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 9.75e1
  variant carriers: 4082
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 38837
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 1510
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-55670992-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670992
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670992
    reference: chr 19
allele count: 1
allele frequency: 8.512666848270226e-6
allele num: 117472
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-17C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-17C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.232C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-17C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-17C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-17C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-17C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.603G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-17C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-17C>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

19-55670995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55670995
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670995
    reference: chr 19
allele count: 14
allele frequency: 1.192910702113156e-4
allele num: 117360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.229G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.606C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-20G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-20G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-20G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-55671005-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671005
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671005
    reference: chr 19
allele count: 4
allele frequency: 3.420206580477461e-5
allele num: 116952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.219A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-30A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-30A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-30A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-30A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-30A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.616T>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-30A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-30A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-30A>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

19-55671007-CAGCTCCAAATCCGGAGGGAGGATGGGGCTCTGGGATCCCAGACA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671007
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55670963
    reference: chr 19
allele count: 1
allele frequency: 8.560031500915923e-6
allele num: 116822
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: CAGCTCCAAATCCGGAGGGAGGATGGGGCTCTGGGATCCCAGACA
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

19-55671017-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671017
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671017
    reference: chr 19
allele count: 1
allele frequency: 8.638711795297085e-6
allele num: 115758
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-42A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-42A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.628T>C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-42A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.207A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-42A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-42A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-42A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-42A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-42A>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-55671019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671019
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671019
    reference: chr 19
allele count: 2
allele frequency: 1.732621803312773e-5
allele num: 115432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-44G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.205G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-44G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-44G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.630C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-44G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-44G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-44G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-44G>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-44G>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-55671020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671020
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671020
    reference: chr 19
allele count: 1
allele frequency: 8.674682072902028e-6
allele num: 115278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.204C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.631G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-45C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-45C>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

19-55671032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671032
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671032
    reference: chr 19
allele count: 4
allele frequency: 3.552145495879511e-5
allele num: 112608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-57C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-57C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.643G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-57C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-57C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-57C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.192C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-57C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-57C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-57C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-55671047-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671047
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671047
    reference: chr 19
allele count: 3
allele frequency: 2.786964438333767e-5
allele num: 107644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-72T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-72T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-72T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.177T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-72T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.658A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-72T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-72T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-72T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-72T>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55671056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671056
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671056
    reference: chr 19
allele count: 2
allele frequency: 1.938585607940447e-5
allele num: 103168
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.667G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-81C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-81C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-81C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-81C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.168C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-81C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-81C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-81C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-81C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18972
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

19-55671058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671058
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671058
    reference: chr 19
allele count: 1
allele frequency: 9.797389975310577e-6
allele num: 102068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-83C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-83C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.669G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-83C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-83C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-83C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.166C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-83C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-83C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-83C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

19-55671063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671063
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671063
    reference: chr 19
allele count: 1
allele frequency: 1.003129764866383e-5
allele num: 99688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-88C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-88C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.674G>A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-88C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-88C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-88C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.161C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-88C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-88C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-88C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

19-55671067-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671067
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671067
    reference: chr 19
allele count: 1
allele frequency: 1.040063235844739e-5
allele num: 96148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-92A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-92A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.678T>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-92A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.157A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-92A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-92A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-92A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-92A>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-92A>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-55671068-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671068
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671068
    reference: chr 19
allele count: 42
allele frequency: 4.375e-4
allele num: 96000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-93C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-93C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-93C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.679G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.156C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-93C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-93C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-93C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-93C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-93C>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15065
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-55671090-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671090
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671089
    reference: chr 19
allele count: 21998
allele frequency: 2.578293483356774e-1
allele num: 85320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-3delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-116delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-116delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-116delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-116delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.705delG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-116delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-116delC
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-116delC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-116delC
  variant of: http://identifiers.org/hgnc/30492
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 7.5e0
  variant carriers: 2994
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 434
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 1.75e1
  variant carriers: 5541
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.5e0
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 18341
  bin: 1.25e1
  variant carriers: 5774
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 2.25e1
  variant carriers: 3663
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 2.75e1
  variant carriers: 1964
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 1016
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 14409
  bin: 2.25e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 556
hgvs: n.136-3delC
num of homozygotes: 3252
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: TG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-55671094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671094
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671094
    reference: chr 19
allele count: 1
allele frequency: 1.291355665177303e-5
allele num: 77438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-119C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-119C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-119C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.705G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-6C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-119C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-119C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-119C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-119C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-119C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 2.75e1
  variant carriers: 0
hgvs: n.136-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum

19-55671100-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671100
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671100
    reference: chr 19
allele count: 1
allele frequency: 1.343616478112487e-5
allele num: 74426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-12T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.711A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-125T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-125T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-125T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-125T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-125T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-125T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-125T>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-125T>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-55671103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671103
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671103
    reference: chr 19
allele count: 55
allele frequency: 7.37186360711988e-4
allele num: 74608
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-128C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-128C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.714G>A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-128C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-128C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-128C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-128C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-15C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-128C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-128C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20808
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17025
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23127
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

19-55671105-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671105
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671105
    reference: chr 19
allele count: 43
allele frequency: 5.823086506689778e-4
allele num: 73844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-130C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.716G>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-130C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-130C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-130C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-130C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-130C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-17C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-130C>A
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-130C>A
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 17194
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20835
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6407
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 5
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

19-55671108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671108
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671108
    reference: chr 19
allele count: 1
allele frequency: 1.376348821845408e-5
allele num: 72656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-20C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.719G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-133C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-133C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-133C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-133C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-133C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-133C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-133C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-133C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20737
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22427
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

19-55671110-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671110
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671110
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 72250
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.721A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1164-135T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*952-135T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.926-135T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1002-135T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-22T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1365-135T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.163-135T>C
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.148-135T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1305-135T>C
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5745
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-55671113-TCTGGACTCCTGGGTCTGAGGGAGGAGGGGCTGGGGGCCTGGACCCCTGGGTCTAAGCAAGGAGGGGCTGGGGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671113
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671039
    reference: chr 19
allele count: 124
allele frequency: 1.781148553535005e-3
allele num: 69618
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17781
  bin: 7.5e0
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 20559
  bin: 1.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 4.25e1
  variant carriers: 10
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: TCTGGACTCCTGGGTCTGAGGGAGGAGGGGCTGGGGGCCTGGACCCCTGGGTCTAAGCAAGGAGGGGCTGGGGGC
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/19-55671121-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671121
    reference: chr 19
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+146G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+146G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+146G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+146G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.732C>A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+146G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-33G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+146G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+146G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+146G>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19342
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-55671134-GAGGAGGGGCTGGGGGCCTGGACCCCTGGGTCTAAGCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671134
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671097
    reference: chr 19
allele count: 16770
allele frequency: 2.280391623606201e-1
allele num: 73540
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.25e1
  variant carriers: 2815
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.5e0
  variant carriers: 1453
genotype depth: GenotypeDepth
  all individuals: 17537
  bin: 1.25e1
  variant carriers: 5526
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.75e1
  variant carriers: 1314
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 16991
  bin: 7.5e0
  variant carriers: 4122
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 1.75e1
  variant carriers: 4823
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 5.25e1
  variant carriers: 468
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 3.75e1
  variant carriers: 379
genotype quality: GenotypeQuality
  all individuals: 13981
  bin: 2.25e1
  variant carriers: 303
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 420
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.25e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 4.25e1
  variant carriers: 463
num of homozygotes: 1553
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: GAGGAGGGGCTGGGGGCCTGGACCCCTGGGTCTAAGCA
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-55671137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671137
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671137
    reference: chr 19
allele count: 1
allele frequency: 2.368433518071148e-5
allele num: 42222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+130C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+130C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.136-49C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+130C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+130C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+130C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+130C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.748G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+130C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+130C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-55671219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671219
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671219
    reference: chr 19
allele count: 1
allele frequency: 8.329168748958854e-6
allele num: 120060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.830G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+48C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+48C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.135+48C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33867
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

19-55671220-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671220
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671220
    reference: chr 19
allele count: 1
allele frequency: 8.32126749546491e-6
allele num: 120174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+47C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+47C>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.831G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.135+47C>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

19-55671232-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671232
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671232
    reference: chr 19
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.135+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+35A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.843T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+35A>G
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+35A>G
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum

19-55671245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671245
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671245
    reference: chr 19
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.135+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+22C>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.856G>A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+22C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+22C>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-55671257-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55671257
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55671257
    reference: chr 19
allele count: 279
allele frequency: 2.313586307549423e-3
allele num: 120592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000472645
  ensembl transcript: ENST00000588076
  gene symbol: DNAAF3
  hgvsc: ENST00000588076.1:c.162+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267577
  ensembl transcript: ENST00000591665
  gene symbol: CTD-2587H24.5
  hgvsc: ENST00000591665.1:n.868C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000533527
  gene symbol: DNAAF3
  hgvsc: ENST00000533527.2:n.925+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl transcript: ENST00000587789
  gene symbol: DNAAF3
  hgvsc: ENST00000587789.2:n.135+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000436975
  ensembl transcript: ENST00000527223
  gene symbol: DNAAF3
  hgvsc: ENST00000527223.2:c.1364+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000433826
  ensembl transcript: ENST00000528412
  gene symbol: DNAAF3
  hgvsc: ENST00000528412.1:c.*951+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000394343
  ensembl transcript: ENST00000455045
  gene symbol: DNAAF3
  hgvsc: ENST00000455045.1:c.1001+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267110
  ensembl protein: ENSP00000473050
  ensembl transcript: ENST00000587871
  gene symbol: CTD-2587H24.4
  hgvsc: ENST00000587871.1:c.147+10G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000432046
  ensembl transcript: ENST00000524407
  gene symbol: DNAAF3
  hgvsc: ENST00000524407.2:c.1163+10G>T
  variant of: http://identifiers.org/hgnc/30492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167646
  ensembl protein: ENSP00000375600
  ensembl transcript: ENST00000391720
  gene symbol: DNAAF3
  hgvsc: ENST00000391720.4:c.1304+10G>T
  variant of: http://identifiers.org/hgnc/30492
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9236
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 4.75e1
  variant carriers: 15
num of homozygotes: 2
reference allele: C

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 22

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 24

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 36

GenotypeQuality
all individuals: 30455
bin: 9.75e1
variant carriers: 30351

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 51

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 75

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 63

GenotypeQuality
all individuals: 614
bin: 7.75e1
variant carriers: 104

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 14

GenotypeQuality
all individuals: 785
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 248
bin: 8.25e1
variant carriers: 90

GenotypeQuality
all individuals: 22965
bin: 6.25e1
variant carriers: 71

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 58

GenotypeQuality
all individuals: 3625
bin: 6.75e1
variant carriers: 104

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 71

South Asian
type: Population
allele count: 6954
allele frequency: 4.339198801946836e-1
allele num: 16026
num of homozygotes: 1520

European (Non-Finnish)
type: Population
allele count: 14033
allele frequency: 2.114741251996745e-1
allele num: 66358
num of homozygotes: 1485

Latino
type: Population
allele count: 5927
allele frequency: 5.123616874135546e-1
allele num: 11568
num of homozygotes: 1582

African
type: Population
allele count: 6551
allele frequency: 6.69015522875817e-1
allele num: 9792
num of homozygotes: 2186

European (Finnish)
type: Population
allele count: 1493
allele frequency: 2.257332930148171e-1
allele num: 6614
num of homozygotes: 176

Other
type: Population
allele count: 286
allele frequency: 3.227990970654628e-1
allele num: 886
num of homozygotes: 48

East Asian
type: Population
allele count: 3630
allele frequency: 4.230769230769231e-1
allele num: 8580
num of homozygotes: 761

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.075e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

QD
type: SiteQuality
SIO_000300: 1.871e1

DP
type: SiteQuality
SIO_000300: 4.984102e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38939
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.641870350690754e-5
allele num: 15056
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 3.245e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.191e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 2.292746e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.347e0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.022704029453876e-4
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.760411032990806e-5
allele num: 14792
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.462004500605851e-4
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.238827661378224e-4
allele num: 66056
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.836e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.979e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

DP
type: SiteQuality
SIO_000300: 2.288816e6

QD
type: SiteQuality
SIO_000300: 1.349e1

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9030
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66008
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -2.344e0

QD
type: SiteQuality
SIO_000300: 1.804e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.281592e6

VQSLOD
type: SiteQuality
SIO_000300: -2.275e0

FS
type: SiteQuality
SIO_000300: 2.661e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9028
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6324
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-5
allele num: 65980
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.277767e6

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.485e0

QD
type: SiteQuality
SIO_000300: 1.389e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9028
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.374e1

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

DP
type: SiteQuality
SIO_000300: 2.276432e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 2.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9030
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14354
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.499e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.273496e6

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

FS
type: SiteQuality
SIO_000300: 1.784e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9030
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.180019506757698e-4
allele num: 14354
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 2.273496e6

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.499e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 101

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 70
allele frequency: 1.063765120661358e-3
allele num: 65804
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 32
allele frequency: 2.282128084438739e-3
allele num: 14022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.485e0

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
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SIO_000300: 1.12e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.274202e6

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044696139325295e-5
allele num: 65688
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.662e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.300000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 2.260189e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.574286411319834e-5
allele num: 65584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

DP
type: SiteQuality
SIO_000300: 2.257703e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 8.189398451459202e-4
allele num: 13432
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.345e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 2.257703e6

MQ
type: SiteQuality
SIO_000300: 5.989e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.70891150169596e-5
allele num: 12972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.188e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.252547e6

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 4.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.759155803848541e-5
allele num: 12888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.931e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.251915e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.057355998532469e-5
allele num: 65416
num of homozygotes: 0

African
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allele count: 0
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South Asian
type: Population
allele count: 21
allele frequency: 1.633732690213163e-3
allele num: 12854
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Other
type: Population
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
type: SiteQuality
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QD
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SIO_000300: 1.279e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531768886710373e-5
allele num: 65284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.247261e6

MQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 8.43e0

QD
type: SiteQuality
SIO_000300: 1.216e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.065e-1

GenotypeQuality
all individuals: 8979
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 483
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6276
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.054653790836244e-4
allele num: 9734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.247261e6

VQSLOD
type: SiteQuality
SIO_000300: -1.065e-1

FS
type: SiteQuality
SIO_000300: 8.43e0

QD
type: SiteQuality
SIO_000300: 1.216e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
all individuals: 8977
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.062e-1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

FS
type: SiteQuality
SIO_000300: 1.099e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.232e0

DP
type: SiteQuality
SIO_000300: 2.24634e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 595
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 665
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variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6273
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.133840397472858e-5
allele num: 65212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

DP
type: SiteQuality
SIO_000300: 2.246428e6

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.046e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.356e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
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variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8976
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 898
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.600944727317343e-5
allele num: 65204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

FS
type: SiteQuality
SIO_000300: 1.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 2.246338e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

GenotypeQuality
all individuals: 6273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 1150
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533648242439114e-5
allele num: 65204
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

FS
type: SiteQuality
SIO_000300: 1.119e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

DP
type: SiteQuality
SIO_000300: 2.246338e6

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2790
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8972
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027749229188078e-4
allele num: 9730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.257638315441784e-5
allele num: 12110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.061e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 2.5e0

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

DP
type: SiteQuality
SIO_000300: 2.245748e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 6270
bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
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GenotypeQuality
all individuals: 1149
bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8972
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532895947023116e-5
allele num: 65236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

QD
type: SiteQuality
SIO_000300: 1.147e1

DP
type: SiteQuality
SIO_000300: 2.247654e6

GenotypeQuality
all individuals: 2871
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 112
bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 37274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.598687841069348e-5
allele num: 65236
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.147e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.479e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

DP
type: SiteQuality
SIO_000300: 2.247654e6

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.647920055775041e-4
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

FS
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

DP
type: SiteQuality
SIO_000300: 2.248575e6

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37266
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53298994358597e-5
allele num: 65232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12280
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 4.08e-1

DP
type: SiteQuality
SIO_000300: 2.248201e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.563e0

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

GenotypeQuality
all individuals: 37452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 304
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variant carriers: 0

GenotypeQuality
all individuals: 6277
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.984669434685404e-5
allele num: 12524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531534291052777e-5
allele num: 65294
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.20164609053498e-4
allele num: 9720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.209e0

DP
type: SiteQuality
SIO_000300: 2.251774e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

GenotypeQuality
all individuals: 547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 8960
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 897
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GenotypeQuality
all individuals: 15
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061005846521167e-5
allele num: 65338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 2.251771e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 545
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 479
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GenotypeQuality
all individuals: 1150
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.591087169441724e-5
allele num: 65344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12788
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

FS
type: SiteQuality
SIO_000300: 1.893e0

DP
type: SiteQuality
SIO_000300: 2.252968e6

QD
type: SiteQuality
SIO_000300: 1.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.238e0

GenotypeQuality
all individuals: 1152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530690341343946e-5
allele num: 65330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

DP
type: SiteQuality
SIO_000300: 2.253518e6

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528724737823707e-5
allele num: 65414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.25656e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.141e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -2.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

FS
type: SiteQuality
SIO_000300: 3.375e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.049431281066081e-5
allele num: 65586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13782
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.26711e6

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 5.554e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.160092807424594e-3
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
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SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 3.536e0

MQRankSum
type: SiteQuality
SIO_000300: -1.906e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.545e1

DP
type: SiteQuality
SIO_000300: 2.270747e6

QD
type: SiteQuality
SIO_000300: 2.097e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65698
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.907031357922365e-5
allele num: 14478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 4.172e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.209e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.275765e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 7.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522672594938636e-5
allele num: 65674
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.265000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 1.265e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

DP
type: SiteQuality
SIO_000300: 2.276018e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 8952
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523925632429137e-5
allele num: 65620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 2.275649e6

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.648e0

QD
type: SiteQuality
SIO_000300: 1.486e1

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 214
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.963788300835655e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 1.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.133e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.422e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
type: SiteQuality
SIO_000300: 2.274566e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525320317266626e-5
allele num: 65560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 2.274584e6

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.538e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 1799
bin: 2.25e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9927

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 13

European (Non-Finnish)
type: Population
allele count: 1876
allele frequency: 2.859930483566071e-2
allele num: 65596
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 193
allele frequency: 2.918935269207501e-2
allele num: 6612
num of homozygotes: 6

East Asian
type: Population
allele count: 1936
allele frequency: 2.256410256410256e-1
allele num: 8580
num of homozygotes: 216

South Asian
type: Population
allele count: 2268
allele frequency: 1.51462535060772e-1
allele num: 14974
num of homozygotes: 187

Latino
type: Population
allele count: 4579
allele frequency: 3.974136434646763e-1
allele num: 11522
num of homozygotes: 1045

African
type: Population
allele count: 652
allele frequency: 6.734145837636851e-2
allele num: 9682
num of homozygotes: 23

Other
type: Population
allele count: 77
allele frequency: 8.850574712643679e-2
allele num: 870
num of homozygotes: 3

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

DP
type: SiteQuality
SIO_000300: 2.248819e6

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

QD
type: SiteQuality
SIO_000300: 1.86e1

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1419
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GenotypeQuality
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GenotypeQuality
all individuals: 2298
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.803646754660499e-5
allele num: 14698
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.879e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

African
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allele frequency: 1.241978886358932e-3
allele num: 9662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.130456105934282e-5
allele num: 65248
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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VQSLOD
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DP
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

East Asian
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allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65184
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.289e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11462
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.547700117625209e-5
allele num: 64612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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QD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.72e-1

InbreedingCoeff
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SIO_000300: 2.1e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.10231432648756e-5
allele num: 64468
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6594
num of homozygotes: 0

East Asian
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South Asian
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 64360
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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Latino
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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DP
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VQSLOD
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.799029669714499e-4
allele num: 10718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.383837e6

VQSLOD
type: SiteQuality
SIO_000300: 5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.466e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.483106931382794e-5
allele num: 57420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12054
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.564e1

DP
type: SiteQuality
SIO_000300: 1.250864e6

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 1.998e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

GenotypeQuality
all individuals: 1132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.763419623333568e-5
allele num: 56708
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.761e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.873e0

DP
type: SiteQuality
SIO_000300: 1.217301e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 6.026e1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22698
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variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.140771161305042e-4
allele num: 8766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e0

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 4.771e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.992e1

DP
type: SiteQuality
SIO_000300: 1.161733e6

MQ
type: SiteQuality
SIO_000300: 6.08e1

VQSLOD
type: SiteQuality
SIO_000300: -1.878e0

GenotypeQuality
all individuals: 3934
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1037
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.09090909090909e-5
allele num: 11000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.721e0

QD
type: SiteQuality
SIO_000300: 1.566e1

MQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.956e0

DP
type: SiteQuality
SIO_000300: 1.095901e6

FS
type: SiteQuality
SIO_000300: 2.6107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

GenotypeQuality
all individuals: 715
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 147
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 934
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variant carriers: 0

GenotypeQuality
all individuals: 24737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 440
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GenotypeQuality
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 581
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GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6824
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 3.817487729503727e-3
allele num: 11002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

DP
type: SiteQuality
SIO_000300: 1.093673e6

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 6.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeQuality
all individuals: 1354
bin: 1.75e1
variant carriers: 382

GenotypeQuality
all individuals: 6088
bin: 6.25e1
variant carriers: 441

GenotypeQuality
all individuals: 1226
bin: 6.75e1
variant carriers: 370

GenotypeQuality
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bin: 5.25e1
variant carriers: 356

GenotypeQuality
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bin: 8.75e1
variant carriers: 277

GenotypeQuality
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bin: 1.25e1
variant carriers: 173

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14838

GenotypeQuality
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bin: 7.75e1
variant carriers: 590

GenotypeQuality
all individuals: 3570
bin: 2.75e1
variant carriers: 308

GenotypeQuality
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bin: 3.25e1
variant carriers: 447

GenotypeQuality
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bin: 5.75e1
variant carriers: 449

GenotypeQuality
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bin: 8.25e1
variant carriers: 448

GenotypeQuality
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bin: 7.5e0
variant carriers: 159

GenotypeQuality
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bin: 7.25e1
variant carriers: 616

GenotypeQuality
all individuals: 1146
bin: 4.75e1
variant carriers: 683

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 337

Latino
type: Population
allele count: 1115
allele frequency: 1.371126414166257e-1
allele num: 8132
num of homozygotes: 74

European (Finnish)
type: Population
allele count: 1203
allele frequency: 2.162113587347232e-1
allele num: 5564
num of homozygotes: 115

East Asian
type: Population
allele count: 1320
allele frequency: 2.243371855880353e-1
allele num: 5884
num of homozygotes: 123

African
type: Population
allele count: 4940
allele frequency: 6.27700127064803e-1
allele num: 7870
num of homozygotes: 1510

South Asian
type: Population
allele count: 3364
allele frequency: 3.288367546432063e-1
allele num: 10230
num of homozygotes: 513

Other
type: Population
allele count: 169
allele frequency: 2.734627831715211e-1
allele num: 618
num of homozygotes: 23

European (Non-Finnish)
type: Population
allele count: 9887
allele frequency: 2.102632810173961e-1
allele num: 47022
num of homozygotes: 894

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.99e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 9.09775e5

QD
type: SiteQuality
SIO_000300: 1.812e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 666
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.546551190844417e-4
allele num: 6466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.989e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

QD
type: SiteQuality
SIO_000300: 2.166e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.823e0

FS
type: SiteQuality
SIO_000300: 1.958e0

DP
type: SiteQuality
SIO_000300: 8.04991e5

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1090
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GenotypeQuality
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GenotypeQuality
all individuals: 6100
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 586
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GenotypeQuality
all individuals: 1103
bin: 4.25e1
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GenotypeQuality
all individuals: 728
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.197604790419162e-4
allele num: 8350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7204
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.92e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 7.63493e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

FS
type: SiteQuality
SIO_000300: 3.375e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.795e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.308e0

VQSLOD
type: SiteQuality
SIO_000300: -2.18e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 3479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 2031
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6911
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1069
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 52
allele frequency: 8.25658939345824e-3
allele num: 6298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42012
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.149377593360996e-4
allele num: 7230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.681e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

FS
type: SiteQuality
SIO_000300: 1.7406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

DP
type: SiteQuality
SIO_000300: 7.60637e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.1e1

GenotypeQuality
all individuals: 22920
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 1096
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5392
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5718
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 286
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6364
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 675
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1017
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 128
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41614
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 5.205811138014528e-3
allele num: 8260
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.282e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.928e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.52015e5

FS
type: SiteQuality
SIO_000300: 1.5263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

GenotypeQuality
all individuals: 1188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5709
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6537
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5299
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.657824933687003e-4
allele num: 6032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.665e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.164e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 7.36339e5

FS
type: SiteQuality
SIO_000300: 5.891e0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

GenotypeQuality
all individuals: 3749
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 3.01e0

DP
type: SiteQuality
SIO_000300: 7.33207e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.655e1

GenotypeQuality
all individuals: 1182
bin: 2.5e0
variant carriers: 81

GenotypeQuality
all individuals: 6519
bin: 3.25e1
variant carriers: 16

GenotypeQuality
all individuals: 110
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 1.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1107
bin: 4.75e1
variant carriers: 14

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6163
bin: 7.5e0
variant carriers: 82

GenotypeQuality
all individuals: 3731
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 21624
bin: 2.25e1
variant carriers: 20

GenotypeQuality
all individuals: 229
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5837
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4358
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 3

East Asian
type: Population
allele count: 20
allele frequency: 4.286326618088298e-3
allele num: 4666
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 2.486788933789244e-3
allele num: 6434
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 2.871312973114069e-3
allele num: 7662
num of homozygotes: 0

African
type: Population
allele count: 51
allele frequency: 9.074733096085408e-3
allele num: 5620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.064409578860446e-4
allele num: 4844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 3.509651541739784e-4
allele num: 39890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

DP
type: SiteQuality
SIO_000300: 7.27467e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.017e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.013e0

FS
type: SiteQuality
SIO_000300: 1.1483e1

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

MQ
type: SiteQuality
SIO_000300: 5.521e1

QD
type: SiteQuality
SIO_000300: 6.0e-2

GenotypeQuality
all individuals: 5680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6533
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.564365575956508e-5
allele num: 38996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 6.04e0

DP
type: SiteQuality
SIO_000300: 6.76139e5

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 6.154e0

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2140
bin: 1.25e1
variant carriers: 329

GenotypeQuality
all individuals: 4477
bin: 3.25e1
variant carriers: 344

GenotypeQuality
all individuals: 2430
bin: 1.75e1
variant carriers: 353

GenotypeQuality
all individuals: 916
bin: 6.75e1
variant carriers: 390

GenotypeQuality
all individuals: 4595
bin: 7.5e0
variant carriers: 322

GenotypeQuality
all individuals: 957
bin: 2.5e0
variant carriers: 255

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 425

GenotypeQuality
all individuals: 3223
bin: 6.25e1
variant carriers: 437

GenotypeQuality
all individuals: 3987
bin: 2.75e1
variant carriers: 339

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 375

GenotypeQuality
all individuals: 554
bin: 7.75e1
variant carriers: 403

GenotypeQuality
all individuals: 13894
bin: 9.75e1
variant carriers: 13818

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 370

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 387

African
type: Population
allele count: 3056
allele frequency: 5.431923213650907e-1
allele num: 5626
num of homozygotes: 735

Other
type: Population
allele count: 120
allele frequency: 2.272727272727273e-1
allele num: 528
num of homozygotes: 7

South Asian
type: Population
allele count: 2449
allele frequency: 2.897539044013251e-1
allele num: 8452
num of homozygotes: 238

Latino
type: Population
allele count: 634
allele frequency: 1.091597796143251e-1
allele num: 5808
num of homozygotes: 34

European (Non-Finnish)
type: Population
allele count: 8641
allele frequency: 1.991013824884793e-1
allele num: 43400
num of homozygotes: 423

European (Finnish)
type: Population
allele count: 964
allele frequency: 1.920318725099601e-1
allele num: 5020
num of homozygotes: 49

East Asian
type: Population
allele count: 906
allele frequency: 1.925201869953251e-1
allele num: 4706
num of homozygotes: 67

QD
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 7.65994e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.625e1

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.056e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.061e-1

GenotypeQuality
all individuals: 4057
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.719961312402351e-5
allele num: 26882
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.518e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.1e0

VQSLOD
type: SiteQuality
SIO_000300: -4.812e-1

DP
type: SiteQuality
SIO_000300: 4.58627e5

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 778
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.756e0

DP
type: SiteQuality
SIO_000300: 2.410804e6

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 3.277e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 2331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 5.642e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.7e-1

DP
type: SiteQuality
SIO_000300: 2.412434e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 3.625e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

QD
type: SiteQuality
SIO_000300: 1.743e1

VQSLOD
type: SiteQuality
SIO_000300: -7.403e-1

GenotypeQuality
all individuals: 3531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34043
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.692e0

DP
type: SiteQuality
SIO_000300: 2.431325e6

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

GenotypeQuality
all individuals: 2487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34084
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5715
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 2.439193e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

QD
type: SiteQuality
SIO_000300: 1.085e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1