17-33772488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772488
    reference: chr 17
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.212G>A
  hgvsp: ENSP00000444016.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.212G>A
  hgvsp: ENSP00000433181.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+187G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.212G>A
  hgvsp: ENSP00000285013.6:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.212G>A
  hgvsp: ENSP00000437298.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.212G>A
  hgvsp: ENSP00000434439.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+187G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-768G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.212G>A
  hgvsp: ENSP00000467426.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.212G>A
  hgvsp: ENSP00000467557.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg71His
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/17-33772488-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772488
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.212G>T
  hgvsp: ENSP00000285013.6:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+187G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.212G>T
  hgvsp: ENSP00000434439.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.212G>T
  hgvsp: ENSP00000467557.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.212G>T
  hgvsp: ENSP00000444016.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.212G>T
  hgvsp: ENSP00000433181.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.212G>T
  hgvsp: ENSP00000437298.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-768G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+187G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.212G>T
  hgvsp: ENSP00000467426.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39674
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg71Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-33772489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772489
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772489
    reference: chr 17
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.211C>T
  hgvsp: ENSP00000467426.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.211C>T
  hgvsp: ENSP00000433181.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+186C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-769C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.211C>T
  hgvsp: ENSP00000285013.6:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.211C>T
  hgvsp: ENSP00000444016.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.211C>T
  hgvsp: ENSP00000467557.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.211C>T
  hgvsp: ENSP00000437298.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+186C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.211C>T
  hgvsp: ENSP00000434439.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg71Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-33772496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772496
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772496
    reference: chr 17
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.204G>A
  hgvsp: ENST00000533791.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.204G>A
  hgvsp: ENST00000542635.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.204G>A
  hgvsp: ENST00000285013.6:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.204G>A
  hgvsp: ENST00000526861.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.204G>A
  hgvsp: ENST00000530782.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.204G>A
  hgvsp: ENST00000531588.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-776G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.204G>A
  hgvsp: ENST00000524511.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+179G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+179G>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg68Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-33772499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772499
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772499
    reference: chr 17
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.201C>T
  hgvsp: ENST00000530782.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+176C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.201C>T
  hgvsp: ENST00000542635.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.201C>T
  hgvsp: ENST00000526861.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.201C>T
  hgvsp: ENST00000533791.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.201C>T
  hgvsp: ENST00000524511.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+176C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-779C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.201C>T
  hgvsp: ENST00000531588.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.201C>T
  hgvsp: ENST00000285013.6:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn67Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-33772500-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772500
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772500
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.200A>T
  hgvsp: ENSP00000285013.6:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-780A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.200A>T
  hgvsp: ENSP00000434439.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.200A>T
  hgvsp: ENSP00000467426.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.200A>T
  hgvsp: ENSP00000467557.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+175A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.200A>T
  hgvsp: ENSP00000444016.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.200A>T
  hgvsp: ENSP00000437298.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.200A>T
  hgvsp: ENSP00000433181.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+175A>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39675
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn67Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

17-33772500-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772500
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772500
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.200A>G
  hgvsp: ENSP00000433181.1:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.200A>G
  hgvsp: ENSP00000444016.1:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.200A>G
  hgvsp: ENSP00000434439.1:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+175A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.200A>G
  hgvsp: ENSP00000437298.1:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.200A>G
  hgvsp: ENSP00000467426.1:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-780A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.200A>G
  hgvsp: ENSP00000285013.6:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.200A>G
  hgvsp: ENSP00000467557.1:p.Asn67Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+175A>G
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn67Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-33772502-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772502
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.198C>G
  hgvsp: ENST00000531588.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.198C>G
  hgvsp: ENST00000285013.6:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+173C>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.198C>G
  hgvsp: ENST00000524511.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.198C>G
  hgvsp: ENST00000542635.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.198C>G
  hgvsp: ENST00000526861.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.198C>G
  hgvsp: ENST00000533791.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.198C>G
  hgvsp: ENST00000530782.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+173C>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-782C>G
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala66Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-33772504-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772504
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.196G>T
  hgvsp: ENSP00000437298.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.196G>T
  hgvsp: ENSP00000444016.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.196G>T
  hgvsp: ENSP00000467426.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.196G>T
  hgvsp: ENSP00000433181.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.196G>T
  hgvsp: ENSP00000434439.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-784G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+171G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.196G>T
  hgvsp: ENSP00000467557.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.196G>T
  hgvsp: ENSP00000285013.6:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+171G>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala66Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

17-33772521-ACTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772521
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772518
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+151_25+153delGAG
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.176_178delGAG
  hgvsp: ENSP00000433181.1:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-804_-14-802delGAG
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.176_178delGAG
  hgvsp: ENSP00000444016.1:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.176_178delGAG
  hgvsp: ENSP00000467557.1:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.176_178delGAG
  hgvsp: ENSP00000437298.1:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.176_178delGAG
  hgvsp: ENSP00000467426.1:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.176_178delGAG
  hgvsp: ENSP00000434439.1:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+151_25+153delGAG
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.176_178delGAG
  hgvsp: ENSP00000285013.6:p.Gly59del
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly59del
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: ACTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-33772522-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772522
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772522
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-802G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.178G>C
  hgvsp: ENSP00000467426.1:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+153G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.178G>C
  hgvsp: ENSP00000434439.1:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.178G>C
  hgvsp: ENSP00000433181.1:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.178G>C
  hgvsp: ENSP00000285013.6:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.178G>C
  hgvsp: ENSP00000467557.1:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.178G>C
  hgvsp: ENSP00000437298.1:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.178G>C
  hgvsp: ENSP00000444016.1:p.Val60Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+153G>C
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val60Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-33772526-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772526
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772526
    reference: chr 17
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.174A>G
  hgvsp: ENST00000526861.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.174A>G
  hgvsp: ENST00000285013.6:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.174A>G
  hgvsp: ENST00000533791.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.174A>G
  hgvsp: ENST00000542635.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.174A>G
  hgvsp: ENST00000531588.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+149A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.174A>G
  hgvsp: ENST00000530782.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+149A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-806A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.174A>G
  hgvsp: ENST00000524511.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5212
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 39645
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly58Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-33772528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772528
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772528
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.172G>A
  hgvsp: ENSP00000433181.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-808G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+147G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.172G>A
  hgvsp: ENSP00000285013.6:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.172G>A
  hgvsp: ENSP00000434439.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.172G>A
  hgvsp: ENSP00000467426.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.172G>A
  hgvsp: ENSP00000437298.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.172G>A
  hgvsp: ENSP00000467557.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.172G>A
  hgvsp: ENSP00000444016.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+147G>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly58Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

17-33772530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772530
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772530
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.170G>A
  hgvsp: ENSP00000467426.1:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.170G>A
  hgvsp: ENSP00000467557.1:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.170G>A
  hgvsp: ENSP00000437298.1:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.170G>A
  hgvsp: ENSP00000434439.1:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.170G>A
  hgvsp: ENSP00000433181.1:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.170G>A
  hgvsp: ENSP00000285013.6:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-810G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.170G>A
  hgvsp: ENSP00000444016.1:p.Gly57Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+145G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+145G>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly57Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-33772533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772533
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772533
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.167C>T
  hgvsp: ENSP00000433181.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+142C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.167C>T
  hgvsp: ENSP00000434439.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+142C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.167C>T
  hgvsp: ENSP00000437298.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.167C>T
  hgvsp: ENSP00000467557.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.167C>T
  hgvsp: ENSP00000285013.6:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.167C>T
  hgvsp: ENSP00000444016.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-813C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.167C>T
  hgvsp: ENSP00000467426.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39644
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser56Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-33772541-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772541
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772541
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.159A>G
  hgvsp: ENST00000530782.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+134A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.159A>G
  hgvsp: ENST00000285013.6:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.159A>G
  hgvsp: ENST00000524511.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.159A>G
  hgvsp: ENST00000542635.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.159A>G
  hgvsp: ENST00000526861.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-821A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.159A>G
  hgvsp: ENST00000531588.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+134A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.159A>G
  hgvsp: ENST00000533791.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu53Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-33772547-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772547
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772547
    reference: chr 17
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.153T>A
  hgvsp: ENSP00000467426.1:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.153T>A
  hgvsp: ENSP00000467557.1:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.153T>A
  hgvsp: ENSP00000434439.1:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.153T>A
  hgvsp: ENSP00000433181.1:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.153T>A
  hgvsp: ENSP00000437298.1:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+128T>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.153T>A
  hgvsp: ENSP00000285013.6:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.153T>A
  hgvsp: ENSP00000444016.1:p.Cys51Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+128T>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-827T>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys51Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-33772550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772550
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772550
    reference: chr 17
allele count: 12376
allele frequency: 1.019372693726937e-1
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+125G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-830G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.150G>A
  hgvsp: ENST00000531588.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.150G>A
  hgvsp: ENST00000530782.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.150G>A
  hgvsp: ENST00000524511.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.150G>A
  hgvsp: ENST00000526861.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.150G>A
  hgvsp: ENST00000285013.6:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+125G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.150G>A
  hgvsp: ENST00000533791.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.150G>A
  hgvsp: ENST00000542635.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 23167
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15681
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 9.75e1
  variant carriers: 9884
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala50Ala
num of homozygotes: 1214
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-33772551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772551
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772551
    reference: chr 17
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.149C>T
  hgvsp: ENSP00000444016.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+124C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.149C>T
  hgvsp: ENSP00000285013.6:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.149C>T
  hgvsp: ENSP00000467557.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-831C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.149C>T
  hgvsp: ENSP00000433181.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.149C>T
  hgvsp: ENSP00000434439.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.149C>T
  hgvsp: ENSP00000437298.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.149C>T
  hgvsp: ENSP00000467426.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+124C>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala50Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-33772552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772552
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772552
    reference: chr 17
allele count: 587
allele frequency: 4.834777451981682e-3
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.148G>A
  hgvsp: ENSP00000467557.1:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-832G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.148G>A
  hgvsp: ENSP00000437298.1:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.148G>A
  hgvsp: ENSP00000433181.1:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.148G>A
  hgvsp: ENSP00000285013.6:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.148G>A
  hgvsp: ENSP00000444016.1:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.148G>A
  hgvsp: ENSP00000434439.1:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.148G>A
  hgvsp: ENSP00000467426.1:p.Ala50Thr
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+123G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+123G>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 9.75e1
  variant carriers: 470
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24443
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 20446
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala50Thr
num of homozygotes: 17
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-33772553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772553
    reference: chr 17
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.147C>T
  hgvsp: ENST00000531588.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.147C>T
  hgvsp: ENST00000530782.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-833C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.147C>T
  hgvsp: ENST00000285013.6:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.147C>T
  hgvsp: ENST00000533791.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.147C>T
  hgvsp: ENST00000526861.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+122C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.147C>T
  hgvsp: ENST00000542635.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.147C>T
  hgvsp: ENST00000524511.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+122C>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala49Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-33772553-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772553
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.147C>A
  hgvsp: ENST00000526861.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.147C>A
  hgvsp: ENST00000542635.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.147C>A
  hgvsp: ENST00000530782.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.147C>A
  hgvsp: ENST00000524511.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+122C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-833C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.147C>A
  hgvsp: ENST00000285013.6:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.147C>A
  hgvsp: ENST00000533791.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.147C>A
  hgvsp: ENST00000531588.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+122C>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala49Ala
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-33772558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772558
    reference: chr 17
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.142C>T
  hgvsp: ENSP00000444016.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-838C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+117C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.142C>T
  hgvsp: ENSP00000433181.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.142C>T
  hgvsp: ENSP00000285013.6:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.142C>T
  hgvsp: ENSP00000434439.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.142C>T
  hgvsp: ENSP00000437298.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.142C>T
  hgvsp: ENSP00000467557.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.142C>T
  hgvsp: ENSP00000467426.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+117C>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41883
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg48Trp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-33772568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772568
    reference: chr 17
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.132G>A
  hgvsp: ENST00000542635.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+107G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.132G>A
  hgvsp: ENST00000285013.6:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.132G>A
  hgvsp: ENST00000526861.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-848G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.132G>A
  hgvsp: ENST00000530782.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.132G>A
  hgvsp: ENST00000531588.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.132G>A
  hgvsp: ENST00000524511.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+107G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.132G>A
  hgvsp: ENST00000533791.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala44Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-33772569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772569
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772569
    reference: chr 17
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.131C>T
  hgvsp: ENSP00000467426.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.131C>T
  hgvsp: ENSP00000437298.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.131C>T
  hgvsp: ENSP00000444016.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.131C>T
  hgvsp: ENSP00000285013.6:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+106C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.131C>T
  hgvsp: ENSP00000434439.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-849C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+106C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.131C>T
  hgvsp: ENSP00000467557.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.131C>T
  hgvsp: ENSP00000433181.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala44Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

17-33772569-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772569
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772569
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.131C>A
  hgvsp: ENSP00000467557.1:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+106C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.131C>A
  hgvsp: ENSP00000285013.6:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.131C>A
  hgvsp: ENSP00000437298.1:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+106C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.131C>A
  hgvsp: ENSP00000467426.1:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.131C>A
  hgvsp: ENSP00000444016.1:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-849C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.131C>A
  hgvsp: ENSP00000434439.1:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.131C>A
  hgvsp: ENSP00000433181.1:p.Ala44Glu
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala44Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

17-33772580-GTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772578
    reference: chr 17
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.118_119delGA
  hgvsp: ENSP00000434439.1:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+93_25+94delGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.118_119delGA
  hgvsp: ENSP00000444016.1:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-862_-14-861delGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.118_119delGA
  hgvsp: ENSP00000433181.1:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.118_119delGA
  hgvsp: ENSP00000467557.1:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.118_119delGA
  hgvsp: ENSP00000437298.1:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.118_119delGA
  hgvsp: ENSP00000467426.1:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+93_25+94delGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.118_119delGA
  hgvsp: ENSP00000285013.6:p.Asp40ProfsTer30
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp40ProfsTer30
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: GTC
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-33772580-GTCTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772576
    reference: chr 17
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.116_119delGAGA
  hgvsp: ENSP00000433181.1:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.116_119delGAGA
  hgvsp: ENSP00000467557.1:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.116_119delGAGA
  hgvsp: ENSP00000285013.6:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.116_119delGAGA
  hgvsp: ENSP00000444016.1:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-864_-14-861delGAGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.116_119delGAGA
  hgvsp: ENSP00000434439.1:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.116_119delGAGA
  hgvsp: ENSP00000437298.1:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+91_25+94delGAGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.116_119delGAGA
  hgvsp: ENSP00000467426.1:p.Arg39ThrfsTer15
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+91_25+94delGAGA
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg39ThrfsTer15
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: GTCTC
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

17-33772586-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772586
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772587
    reference: chr 17
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-867dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+88dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.113dupA
  hgvsp: ENSP00000433181.1:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+88dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.113dupA
  hgvsp: ENSP00000444016.1:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.113dupA
  hgvsp: ENSP00000285013.6:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.113dupA
  hgvsp: ENSP00000437298.1:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.113dupA
  hgvsp: ENSP00000434439.1:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.113dupA
  hgvsp: ENSP00000467557.1:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.113dupA
  hgvsp: ENSP00000467426.1:p.Arg39GlufsTer32
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg39GlufsTer32
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

17-33772587-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772587
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+88A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.113A>C
  hgvsp: ENSP00000444016.1:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.113A>C
  hgvsp: ENSP00000285013.6:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.113A>C
  hgvsp: ENSP00000467426.1:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+88A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.113A>C
  hgvsp: ENSP00000437298.1:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.113A>C
  hgvsp: ENSP00000434439.1:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.113A>C
  hgvsp: ENSP00000433181.1:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.113A>C
  hgvsp: ENSP00000467557.1:p.Gln38Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-867A>C
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln38Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

17-33772591-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772591
    reference: chr 17
allele count: 13
allele frequency: 1.070857839503122e-4
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+84A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-871A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.109A>G
  hgvsp: ENSP00000467557.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+84A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.109A>G
  hgvsp: ENSP00000444016.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.109A>G
  hgvsp: ENSP00000437298.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.109A>G
  hgvsp: ENSP00000285013.6:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.109A>G
  hgvsp: ENSP00000434439.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.109A>G
  hgvsp: ENSP00000433181.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.109A>G
  hgvsp: ENSP00000467426.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr37Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

17-33772604-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772604
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772604
    reference: chr 17
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+71A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.96A>C
  hgvsp: ENSP00000444016.1:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.96A>C
  hgvsp: ENSP00000437298.1:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.96A>C
  hgvsp: ENSP00000467426.1:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.96A>C
  hgvsp: ENSP00000285013.6:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.96A>C
  hgvsp: ENSP00000467557.1:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.96A>C
  hgvsp: ENSP00000434439.1:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-884A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+71A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.96A>C
  hgvsp: ENSP00000433181.1:p.Lys32Asn
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys32Asn
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-33772606-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772606
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772604
    reference: chr 17
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+67_25+68delGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.92_93delGA
  hgvsp: ENSP00000467557.1:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.92_93delGA
  hgvsp: ENSP00000437298.1:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.92_93delGA
  hgvsp: ENSP00000285013.6:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.92_93delGA
  hgvsp: ENSP00000444016.1:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+67_25+68delGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-888_-14-887delGA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.92_93delGA
  hgvsp: ENSP00000434439.1:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.92_93delGA
  hgvsp: ENSP00000433181.1:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.92_93delGA
  hgvsp: ENSP00000467426.1:p.Arg31LysfsTer39
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg31LysfsTer39
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: TTC
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

17-33772610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772610
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772610
    reference: chr 17
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.90C>T
  hgvsp: ENST00000285013.6:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+65C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+65C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.90C>T
  hgvsp: ENST00000524511.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.90C>T
  hgvsp: ENST00000526861.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-890C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.90C>T
  hgvsp: ENST00000533791.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.90C>T
  hgvsp: ENST00000530782.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.90C>T
  hgvsp: ENST00000531588.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.90C>T
  hgvsp: ENST00000542635.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn30Asn
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-33772610-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772610
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772610
    reference: chr 17
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+65C>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.90C>G
  hgvsp: ENSP00000434439.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.90C>G
  hgvsp: ENSP00000467557.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.90C>G
  hgvsp: ENSP00000285013.6:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-890C>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.90C>G
  hgvsp: ENSP00000437298.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.90C>G
  hgvsp: ENSP00000433181.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.90C>G
  hgvsp: ENSP00000467426.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+65C>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.90C>G
  hgvsp: ENSP00000444016.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn30Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-33772611-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772611
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772611
    reference: chr 17
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.89A>G
  hgvsp: ENSP00000467426.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.89A>G
  hgvsp: ENSP00000434439.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.89A>G
  hgvsp: ENSP00000437298.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-891A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.89A>G
  hgvsp: ENSP00000285013.6:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+64A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+64A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.89A>G
  hgvsp: ENSP00000433181.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.89A>G
  hgvsp: ENSP00000444016.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.89A>G
  hgvsp: ENSP00000467557.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn30Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

17-33772615-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772615
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772615
    reference: chr 17
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.85G>C
  hgvsp: ENSP00000467426.1:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+60G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.85G>C
  hgvsp: ENSP00000434439.1:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.85G>C
  hgvsp: ENSP00000437298.1:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.85G>C
  hgvsp: ENSP00000444016.1:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+60G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.85G>C
  hgvsp: ENSP00000467557.1:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.85G>C
  hgvsp: ENSP00000285013.6:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-895G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.85G>C
  hgvsp: ENSP00000433181.1:p.Glu29Gln
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20658
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu29Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-33772635-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772635
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772635
    reference: chr 17
allele count: 3
allele frequency: 2.475084152861197e-5
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.65G>T
  hgvsp: ENSP00000437298.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.65G>T
  hgvsp: ENSP00000467557.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-915G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+40G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+40G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.65G>T
  hgvsp: ENSP00000285013.6:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.65G>T
  hgvsp: ENSP00000434439.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.65G>T
  hgvsp: ENSP00000433181.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.65G>T
  hgvsp: ENSP00000467426.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.65G>T
  hgvsp: ENSP00000444016.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly22Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-33772636-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772636
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772636
    reference: chr 17
allele count: 3
allele frequency: 2.475737769855417e-5
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.64G>T
  hgvsp: ENSP00000434439.1:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.64G>T
  hgvsp: ENSP00000467426.1:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+39G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+39G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.64G>T
  hgvsp: ENSP00000433181.1:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-916G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.64G>T
  hgvsp: ENSP00000444016.1:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.64G>T
  hgvsp: ENSP00000285013.6:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.64G>T
  hgvsp: ENSP00000467557.1:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.64G>T
  hgvsp: ENSP00000437298.1:p.Gly22Ter
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly22Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-33772636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772636
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772636
    reference: chr 17
allele count: 4
allele frequency: 3.300983693140556e-5
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.64G>A
  hgvsp: ENSP00000433181.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.64G>A
  hgvsp: ENSP00000437298.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.64G>A
  hgvsp: ENSP00000285013.6:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.64G>A
  hgvsp: ENSP00000444016.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-916G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.64G>A
  hgvsp: ENSP00000434439.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+39G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+39G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.64G>A
  hgvsp: ENSP00000467426.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.64G>A
  hgvsp: ENSP00000467557.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly22Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-33772637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772637
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772637
    reference: chr 17
allele count: 10
allele frequency: 8.254094030639197e-5
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.63C>T
  hgvsp: ENST00000285013.6:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+38C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.63C>T
  hgvsp: ENST00000542635.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+38C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.63C>T
  hgvsp: ENST00000524511.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-917C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.63C>T
  hgvsp: ENST00000531588.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.63C>T
  hgvsp: ENST00000526861.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.63C>T
  hgvsp: ENST00000530782.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.63C>T
  hgvsp: ENST00000533791.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val21Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-33772640-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772640
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772640
    reference: chr 17
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+35T>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.60T>A
  hgvsp: ENSP00000467557.1:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.60T>A
  hgvsp: ENSP00000285013.6:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-920T>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.60T>A
  hgvsp: ENSP00000467426.1:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.60T>A
  hgvsp: ENSP00000433181.1:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.60T>A
  hgvsp: ENSP00000437298.1:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.60T>A
  hgvsp: ENSP00000444016.1:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.60T>A
  hgvsp: ENSP00000434439.1:p.Asp20Glu
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+35T>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp20Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-33772645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772645
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772645
    reference: chr 17
allele count: 2
allele frequency: 1.651718613217052e-5
allele num: 121086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.55A>G
  hgvsp: ENSP00000434439.1:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-925A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.55A>G
  hgvsp: ENSP00000285013.6:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.55A>G
  hgvsp: ENSP00000433181.1:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.55A>G
  hgvsp: ENSP00000437298.1:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.55A>G
  hgvsp: ENSP00000467426.1:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+30A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.55A>G
  hgvsp: ENSP00000467557.1:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+30A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.55A>G
  hgvsp: ENSP00000444016.1:p.Ile19Val
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile19Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-33772646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772646
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772646
    reference: chr 17
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+29C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.54C>T
  hgvsp: ENST00000542635.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.54C>T
  hgvsp: ENST00000524511.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.54C>T
  hgvsp: ENST00000531588.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.54C>T
  hgvsp: ENST00000285013.6:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+29C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.54C>T
  hgvsp: ENST00000530782.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.54C>T
  hgvsp: ENST00000526861.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-926C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.54C>T
  hgvsp: ENST00000533791.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val18Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

17-33772648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772648
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772648
    reference: chr 17
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.52G>A
  hgvsp: ENSP00000437298.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+27G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.52G>A
  hgvsp: ENSP00000467426.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.52G>A
  hgvsp: ENSP00000285013.6:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.52G>A
  hgvsp: ENSP00000434439.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-928G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+27G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.52G>A
  hgvsp: ENSP00000433181.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.52G>A
  hgvsp: ENSP00000444016.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.52G>A
  hgvsp: ENSP00000467557.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val18Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/17-33772649-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772649
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772649
    reference: chr 17
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.51G>T
  hgvsp: ENST00000533791.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+26G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.51G>T
  hgvsp: ENST00000531588.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.51G>T
  hgvsp: ENST00000285013.6:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.51G>T
  hgvsp: ENST00000542635.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.51G>T
  hgvsp: ENST00000526861.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+26G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.51G>T
  hgvsp: ENST00000524511.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-929G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.51G>T
  hgvsp: ENST00000530782.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu17Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

17-33772649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772649
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772649
    reference: chr 17
allele count: 211
allele frequency: 1.74299497753106e-3
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+26G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.51G>A
  hgvsp: ENST00000526861.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+26G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.51G>A
  hgvsp: ENST00000524511.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.51G>A
  hgvsp: ENST00000531588.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.51G>A
  hgvsp: ENST00000285013.6:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.51G>A
  hgvsp: ENST00000530782.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.51G>A
  hgvsp: ENST00000533791.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-929G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.51G>A
  hgvsp: ENST00000542635.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 24228
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 20474
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu17Leu
num of homozygotes: 2
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-33772658-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772658
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772658
    reference: chr 17
allele count: 11517
allele frequency: 9.527630708140304e-2
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.42C>A
  hgvsp: ENSP00000434439.1:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.42C>A
  hgvsp: ENSP00000467426.1:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.42C>A
  hgvsp: ENSP00000285013.6:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-938C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.42C>A
  hgvsp: ENSP00000444016.1:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.42C>A
  hgvsp: ENSP00000437298.1:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.42C>A
  hgvsp: ENSP00000433181.1:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+17C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+17C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.42C>A
  hgvsp: ENSP00000467557.1:p.Tyr14Ter
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 4.25e1
  variant carriers: 1070
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 1010
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 3.25e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 20055
  bin: 2.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 1176
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 779
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.75e1
  variant carriers: 779
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 1270
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 18374
  bin: 2.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.25e1
  variant carriers: 1301
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Tyr14Ter
num of homozygotes: 604
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-33772664-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772664
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772664
    reference: chr 17
allele count: 44
allele frequency: 3.648182541788273e-4
allele num: 120608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+11A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-944A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.36A>T
  hgvsp: ENST00000285013.6:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+11A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.36A>T
  hgvsp: ENST00000531588.1:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.36A>T
  hgvsp: ENST00000542635.1:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.36A>T
  hgvsp: ENST00000524511.1:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.36A>T
  hgvsp: ENST00000526861.1:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.36A>T
  hgvsp: ENST00000530782.1:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.36A>T
  hgvsp: ENST00000533791.1:c.36A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro12Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-33772664-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772664
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772664
    reference: chr 17
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.36A>G
  hgvsp: ENST00000533791.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+11A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.36A>G
  hgvsp: ENST00000542635.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.36A>G
  hgvsp: ENST00000526861.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.36A>G
  hgvsp: ENST00000524511.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-944A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.36A>G
  hgvsp: ENST00000285013.6:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.36A>G
  hgvsp: ENST00000530782.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+11A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.36A>G
  hgvsp: ENST00000531588.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro12Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-33772671-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772671
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772671
    reference: chr 17
allele count: 1
allele frequency: 8.32639467110741e-6
allele num: 120100
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.29T>G
  hgvsp: ENSP00000285013.6:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.29T>G
  hgvsp: ENSP00000434439.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.29T>G
  hgvsp: ENSP00000467426.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.29T>G
  hgvsp: ENSP00000467557.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.29T>G
  hgvsp: ENSP00000437298.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-951T>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.25+4T>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.25+4T>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.29T>G
  hgvsp: ENSP00000444016.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.29T>G
  hgvsp: ENSP00000433181.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val10Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-33772678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772678
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772678
    reference: chr 17
allele count: 1
allele frequency: 8.361903169161301e-6
allele num: 119590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.22C>T
  hgvsp: ENST00000524511.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.22C>T
  hgvsp: ENST00000542635.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.22C>T
  hgvsp: ENST00000526861.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-958C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.22C>T
  hgvsp: ENST00000285013.6:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.22C>T
  hgvsp: ENST00000531588.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.22C>T
  hgvsp: ENST00000534689.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.22C>T
  hgvsp: ENST00000360502.2:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.22C>T
  hgvsp: ENST00000533791.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.22C>T
  hgvsp: ENST00000530782.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6619
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu8Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

17-33772681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772681
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772681
    reference: chr 17
allele count: 1
allele frequency: 8.377454594196099e-6
allele num: 119368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.19T>C
  hgvsp: ENSP00000434439.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.19T>C
  hgvsp: ENSP00000444016.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.19T>C
  hgvsp: ENSP00000285013.6:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.19T>C
  hgvsp: ENSP00000435442.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.19T>C
  hgvsp: ENSP00000437298.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.19T>C
  hgvsp: ENSP00000467426.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.19T>C
  hgvsp: ENSP00000433181.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.19T>C
  hgvsp: ENSP00000467557.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-961T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.19T>C
  hgvsp: ENSP00000353692.2:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser7Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-33772689-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772689
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772689
    reference: chr 17
allele count: 11238
allele frequency: 9.539088362617774e-2
allele num: 117810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-969A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.11A>G
  hgvsp: ENSP00000353692.2:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.11A>G
  hgvsp: ENSP00000434439.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.11A>G
  hgvsp: ENSP00000435442.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.11A>G
  hgvsp: ENSP00000433181.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.11A>G
  hgvsp: ENSP00000437298.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.11A>G
  hgvsp: ENSP00000467557.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.11A>G
  hgvsp: ENSP00000467426.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.11A>G
  hgvsp: ENSP00000444016.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.11A>G
  hgvsp: ENSP00000285013.6:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 789
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 3.75e1
  variant carriers: 1583
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16531
  bin: 2.25e1
  variant carriers: 741
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 494
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 1.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.25e1
  variant carriers: 1488
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.75e1
  variant carriers: 1180
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 1419
genotype depth: GenotypeDepth
  all individuals: 20614
  bin: 2.75e1
  variant carriers: 1112
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.25e1
  variant carriers: 23
hgvs: p.Asn4Ser
num of homozygotes: 621
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

17-33772691-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772691
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772691
    reference: chr 17
allele count: 9
allele frequency: 7.726781023025808e-5
allele num: 116478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.9A>G
  hgvsp: ENST00000542635.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-971A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.9A>G
  hgvsp: ENST00000533791.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.9A>G
  hgvsp: ENST00000285013.6:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.9A>G
  hgvsp: ENST00000534689.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.9A>G
  hgvsp: ENST00000524511.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.9A>G
  hgvsp: ENST00000360502.2:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.9A>G
  hgvsp: ENST00000531588.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.9A>G
  hgvsp: ENST00000530782.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.9A>G
  hgvsp: ENST00000526861.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala3Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

17-33772699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772699
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772699
    reference: chr 17
allele count: 2
allele frequency: 1.771447804290447e-5
allele num: 112902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.1A>G
  hgvsp: ENSP00000435442.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.1A>G
  hgvsp: ENSP00000444016.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.1A>G
  hgvsp: ENSP00000437298.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.1A>G
  hgvsp: ENSP00000433181.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.1A>G
  hgvsp: ENSP00000285013.6:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.1A>G
  hgvsp: ENSP00000467426.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-979A>G
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.1A>G
  hgvsp: ENSP00000434439.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.1A>G
  hgvsp: ENSP00000467557.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000353692
  ensembl transcript: ENST00000360502
  gene symbol: SLFN13
  hgvsc: ENST00000360502.2:c.1A>G
  hgvsp: ENSP00000353692.2:p.Met1?
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

17-33772706-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772706
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772706
    reference: chr 17
allele count: 1
allele frequency: 9.259602207489166e-6
allele num: 107996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-986G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

17-33772709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772709
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772709
    reference: chr 17
allele count: 1
allele frequency: 9.634653923231078e-6
allele num: 103792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-989C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-10C>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16275
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17838
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-33772713-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772713
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772713
    reference: chr 17
allele count: 154
allele frequency: 1.536588772924109e-3
allele num: 100222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-993G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-1G>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-14G>T
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14126
  bin: 2.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 16691
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 2
hgvs: c.-13-1G>T
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

17-33772713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772713
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772713
    reference: chr 17
allele count: 2
allele frequency: 1.995569834966375e-5
allele num: 100222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-993G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-1G>A
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20875
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-13-1G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

17-33772716-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772716
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772716
    reference: chr 17
allele count: 1
allele frequency: 1.036849636065778e-5
allele num: 96446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-4T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-996T>C
  variant of: http://identifiers.org/hgnc/26481
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-13-4T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

17-33772727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772727
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772727
    reference: chr 17
allele count: 6
allele frequency: 6.642017402085593e-5
allele num: 90334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1007T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-15T>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24988
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5228
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

17-33772728-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772728
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772728
    reference: chr 17
allele count: 1
allele frequency: 1.113536145383279e-5
allele num: 89804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1008A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-29A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-16A>T
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-33772734-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772734
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772734
    reference: chr 17
allele count: 1
allele frequency: 1.183684098387822e-5
allele num: 84482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1014A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-22A>T
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-35A>T
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24581
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

17-33772738-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772738
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772739
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 79988
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1019dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-40dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-27dupA
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15209
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-33772744-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772744
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772744
    reference: chr 17
allele count: 5
allele frequency: 6.565988181221274e-5
allele num: 76150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1024C>A
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-32C>A
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16930
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21549
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5929
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

17-33772747-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772747
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772747
    reference: chr 17
allele count: 1
allele frequency: 1.371892663118038e-5
allele num: 72892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-48A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1027A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-35A>C
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20464
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-33772747-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33772747
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33772748
    reference: chr 17
allele count: 1
allele frequency: 1.371892663118038e-5
allele num: 72892
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435442
  ensembl transcript: ENST00000534689
  gene symbol: SLFN13
  hgvsc: ENST00000534689.1:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000444016
  ensembl transcript: ENST00000542635
  gene symbol: SLFN13
  hgvsc: ENST00000542635.1:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000437298
  ensembl transcript: ENST00000530782
  gene symbol: SLFN13
  hgvsc: ENST00000530782.1:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000434439
  ensembl transcript: ENST00000526861
  gene symbol: SLFN13
  hgvsc: ENST00000526861.1:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467426
  ensembl transcript: ENST00000533791
  gene symbol: SLFN13
  hgvsc: ENST00000533791.1:c.-49dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000467557
  ensembl transcript: ENST00000531588
  gene symbol: SLFN13
  hgvsc: ENST00000531588.1:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000285013
  ensembl transcript: ENST00000285013
  gene symbol: SLFN13
  hgvsc: ENST00000285013.6:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000435328
  ensembl transcript: ENST00000532210
  gene symbol: SLFN13
  hgvsc: ENST00000532210.1:c.-14-1028dupT
  variant of: http://identifiers.org/hgnc/26481
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154760
  ensembl protein: ENSP00000433181
  ensembl transcript: ENST00000524511
  gene symbol: SLFN13
  hgvsc: ENST00000524511.1:c.-13-36dupT
  variant of: http://identifiers.org/hgnc/26481
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20464
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5905
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-33801899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33801899
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33801899
    reference: chr 17
allele count: 36
allele frequency: 4.069635993669455e-3
allele num: 8846
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000205045
  ensembl protein: ENSP00000437635
  ensembl transcript: ENST00000260908
  gene symbol: SLFN12L
  hgvsc: ENST00000260908.7:c.*43C>T
  variant of: http://identifiers.org/hgnc/33920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205045
  ensembl transcript: ENST00000590802
  gene symbol: SLFN12L
  hgvsc: ENST00000590802.1:n.152+3195C>T
  variant of: http://identifiers.org/hgnc/33920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205045
  ensembl transcript: ENST00000587436
  gene symbol: SLFN12L
  hgvsc: ENST00000587436.1:n.395+3195C>T
  variant of: http://identifiers.org/hgnc/33920
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14826
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9183
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 2
reference allele: G

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.328e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 3.335e0

DP
type: SiteQuality
SIO_000300: 1.70726e6

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.70726e6

FS
type: SiteQuality
SIO_000300: 3.335e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5207
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.114e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 1.706874e6

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39677
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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East Asian
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African
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Latino
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South Asian
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FS
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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South Asian
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African
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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Other
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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East Asian
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African
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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allele count: 7
allele frequency: 6.726888333653661e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.759999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.44e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.707802e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

GenotypeQuality
all individuals: 1050
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7014
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

QD
type: SiteQuality
SIO_000300: 1.042e1

DP
type: SiteQuality
SIO_000300: 1.707215e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.274e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.191e0

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

FS
type: SiteQuality
SIO_000300: 1.366e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 1.239e1

DP
type: SiteQuality
SIO_000300: 1.70724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 891
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GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 4.591e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

MQ
type: SiteQuality
SIO_000300: 5.821e1

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.577e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 1.707459e6

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 7015
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 891
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 39619
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.707394e6

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 2653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1050
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 1934
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GenotypeQuality
all individuals: 2269
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GenotypeQuality
all individuals: 891
bin: 8.75e1
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GenotypeQuality
all individuals: 5210
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.844675124951942e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

FS
type: SiteQuality
SIO_000300: 1.864e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.707677e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 580
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GenotypeQuality
all individuals: 1782
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14604
bin: 9.75e1
variant carriers: 11162

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 587
allele frequency: 5.070836212854181e-2
allele num: 11576
num of homozygotes: 33

South Asian
type: Population
allele count: 5213
allele frequency: 3.157097868217054e-1
allele num: 16512
num of homozygotes: 905

European (Finnish)
type: Population
allele count: 447
allele frequency: 6.758391291200484e-2
allele num: 6614
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 5658
allele frequency: 8.477928616380473e-2
allele num: 66738
num of homozygotes: 248

East Asian
type: Population
allele count: 77
allele frequency: 8.897619597873815e-3
allele num: 8654
num of homozygotes: 2

African
type: Population
allele count: 302
allele frequency: 2.902171823947722e-2
allele num: 10406
num of homozygotes: 5

Other
type: Population
allele count: 92
allele frequency: 1.013215859030837e-1
allele num: 908
num of homozygotes: 8

DP
type: SiteQuality
SIO_000300: 3.004864e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.51e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 1.525e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5003
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GenotypeQuality
all individuals: 6899
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.149e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.348e1

DP
type: SiteQuality
SIO_000300: 1.73919e6

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 684
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GenotypeQuality
all individuals: 5135
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variant carriers: 569

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.947857356907402e-4
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

African
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allele count: 543
allele frequency: 5.218143378819912e-2
allele num: 10406
num of homozygotes: 17

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 2.418379685610641e-3
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.37e1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

DP
type: SiteQuality
SIO_000300: 1.785716e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

DP
type: SiteQuality
SIO_000300: 1.723333e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 2.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 1.723333e6

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 1.723129e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 1.859e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.723e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.555e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.08e0

FS
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
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East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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allele num: 6614
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South Asian
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allele frequency: 0.0e0
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African
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ClippingRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 3.466605038132656e-4
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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allele count: 0
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Latino
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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FS
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
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South Asian
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allele frequency: 0.0e0
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African
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East Asian
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allele num: 8654
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FS
type: SiteQuality
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DP
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MQRankSum
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SIO_000300: 4.21e-1

ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.996973057212216e-5
allele num: 66734
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.461e0

VQSLOD
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SIO_000300: 1.3e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.948090870946472e-4
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66728
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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South Asian
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Latino
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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MQRankSum
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QD
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 16510
num of homozygotes: 0

African
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
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African
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ReadPosRankSum
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SIO_000300: 3.32e-1

ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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FS
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DP
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.968e1

ClippingRankSum
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SIO_000300: -1.02e-1

BaseQRankSum
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SIO_000300: -4.149e0

QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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allele num: 11572
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66648
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Other
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South Asian
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 1.050357121421283e-4
allele num: 66644
num of homozygotes: 0

InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.089e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.792e0

DP
type: SiteQuality
SIO_000300: 1.713563e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.518e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6873
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4623
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.713443e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.798e1

GenotypeQuality
all individuals: 6856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
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GenotypeQuality
all individuals: 4620
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variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1491
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41297
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.465e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 1.71298e6

VQSLOD
type: SiteQuality
SIO_000300: -6.968e-1

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
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GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

FS
type: SiteQuality
SIO_000300: 9.215e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

DP
type: SiteQuality
SIO_000300: 1.717284e6

QD
type: SiteQuality
SIO_000300: 1.575e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 9.75e1
variant carriers: 209

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 192
allele frequency: 1.866977829638273e-2
allele num: 10284
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.124372945857118e-3
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.004743747560573e-5
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

FS
type: SiteQuality
SIO_000300: 9.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

QD
type: SiteQuality
SIO_000300: 1.575e1

DP
type: SiteQuality
SIO_000300: 1.717284e6

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 36866
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 70
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variant carriers: 8

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
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variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 1

GenotypeQuality
all individuals: 13034
bin: 9.75e1
variant carriers: 10806

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 19

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5403
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 844
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1292
bin: 7.25e1
variant carriers: 9

Other
type: Population
allele count: 115
allele frequency: 1.266519823788546e-1
allele num: 908
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 830
allele frequency: 1.254913819171455e-1
allele num: 6614
num of homozygotes: 55

East Asian
type: Population
allele count: 1167
allele frequency: 1.349757113115892e-1
allele num: 8646
num of homozygotes: 73

Latino
type: Population
allele count: 708
allele frequency: 6.131993764074138e-2
allele num: 11546
num of homozygotes: 28

South Asian
type: Population
allele count: 706
allele frequency: 4.317514677103718e-2
allele num: 16352
num of homozygotes: 17

European (Non-Finnish)
type: Population
allele count: 6985
allele frequency: 1.049429086538462e-1
allele num: 66560
num of homozygotes: 380

African
type: Population
allele count: 1006
allele frequency: 9.810805539301735e-2
allele num: 10254
num of homozygotes: 47

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

FS
type: SiteQuality
SIO_000300: 2.139e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.107e0

DP
type: SiteQuality
SIO_000300: 1.998977e6

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 44268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 1032
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variant carriers: 0

GenotypeQuality
all individuals: 835
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 574
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600554785020804e-4
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 3.825779870512066e-3
allele num: 10194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

DP
type: SiteQuality
SIO_000300: 1.670033e6

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 1.366e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 2874
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GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 44268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 1.366e0

DP
type: SiteQuality
SIO_000300: 1.670033e6

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1579
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 1364
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 1018
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 570
bin: 9.25e1
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GenotypeQuality
all individuals: 261
bin: 3.25e1
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GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43505
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16034
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 1.664e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

MQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

DP
type: SiteQuality
SIO_000300: 1.657257e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.668e0

QD
type: SiteQuality
SIO_000300: 2.051e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
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variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 562
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GenotypeQuality
all individuals: 10
bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 1528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513867021920794e-5
allele num: 66056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.645821e6

QD
type: SiteQuality
SIO_000300: 1.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: -1.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

FS
type: SiteQuality
SIO_000300: 5.699e0

GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 2228
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 425
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2800
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65972
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.341958396752917e-5
allele num: 15768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.355e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.639426e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.539e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 21

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 327
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variant carriers: 38

GenotypeQuality
all individuals: 36881
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variant carriers: 20

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 307
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variant carriers: 7

GenotypeQuality
all individuals: 11259
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variant carriers: 10327

GenotypeQuality
all individuals: 657
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variant carriers: 34

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 38

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 3678
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 20

GenotypeQuality
all individuals: 4918
bin: 6.75e1
variant carriers: 39

European (Non-Finnish)
type: Population
allele count: 6524
allele frequency: 9.998773908778813e-2
allele num: 65248
num of homozygotes: 322

African
type: Population
allele count: 166
allele frequency: 1.676429004241567e-2
allele num: 9902
num of homozygotes: 1

East Asian
type: Population
allele count: 64
allele frequency: 7.49063670411985e-3
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 112
allele frequency: 1.266968325791855e-1
allele num: 884
num of homozygotes: 9

South Asian
type: Population
allele count: 2743
allele frequency: 1.792341871406168e-1
allele num: 15304
num of homozygotes: 219

European (Finnish)
type: Population
allele count: 646
allele frequency: 9.829580036518563e-2
allele num: 6572
num of homozygotes: 27

Latino
type: Population
allele count: 983
allele frequency: 8.656216977809088e-2
allele num: 11356
num of homozygotes: 43

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 1.73205e6

QD
type: SiteQuality
SIO_000300: 1.61e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5325
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variant carriers: 0

GenotypeQuality
all individuals: 171
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GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 43824
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 971
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variant carriers: 0

GenotypeQuality
all individuals: 6008
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variant carriers: 0

GenotypeQuality
all individuals: 456
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
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GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015847216578627e-4
allele num: 9844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.235635734585444e-4
allele num: 64744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 1.941e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

DP
type: SiteQuality
SIO_000300: 1.553816e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.173e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9034
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 831
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GenotypeQuality
all individuals: 119
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 858
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 309
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GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 647
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39688
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.403846153846154e-4
allele num: 8320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.4803e6

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

QD
type: SiteQuality
SIO_000300: 1.245e1

FS
type: SiteQuality
SIO_000300: 1.478e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 500
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GenotypeQuality
all individuals: 13496
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 1075
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 34496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.101079057476327e-4
allele num: 9082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.381096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.239e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

FS
type: SiteQuality
SIO_000300: 9.782999999999999e0

QD
type: SiteQuality
SIO_000300: 1.499e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 142
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 240
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 495
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.116883116883117e-5
allele num: 12320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.077e0

DP
type: SiteQuality
SIO_000300: 1.274043e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.056e-1

QD
type: SiteQuality
SIO_000300: 7.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

GenotypeQuality
all individuals: 1093
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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GenotypeQuality
all individuals: 20875
bin: 2.25e1
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GenotypeQuality
all individuals: 289
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GenotypeQuality
all individuals: 231
bin: 4.75e1
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GenotypeQuality
all individuals: 23994
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 153

GenotypeQuality
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GenotypeQuality
all individuals: 258
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

African
type: Population
allele count: 138
allele frequency: 1.630434782608696e-2
allele num: 8464
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.329787234042553e-3
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.150386948337168e-3
allele num: 9562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.113893433876361e-5
allele num: 56228
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

QD
type: SiteQuality
SIO_000300: 1.39e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 1.183479e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.720282126268708e-4
allele num: 11626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 1.183479e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.841078135356064e-5
allele num: 54316
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.069923e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.171371676232869e-4
allele num: 51222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 3.465e0

DP
type: SiteQuality
SIO_000300: 9.17197e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.593e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.692047377326565e-4
allele num: 5910
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.571e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.789e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 9.0409e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.133e0

DP
type: SiteQuality
SIO_000300: 8.3463e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.042e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
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allele frequency: 6.934812760055479e-4
allele num: 7210
num of homozygotes: 0

African
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.402921953094964e-5
allele num: 41616
num of homozygotes: 0

African
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.69634e5

QD
type: SiteQuality
SIO_000300: 1.245e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1009
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15915
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5991
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5472
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.464986815118664e-4
allele num: 6826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.245e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

DP
type: SiteQuality
SIO_000300: 7.69634e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1