http://identifiers.org/exac.variant/22-31503502-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503502
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503502
    reference: chr 22
allele count: 1
allele frequency: 7.382253063635022e-5
allele num: 13546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000460642
  gene symbol: SELM
  hgvsc: ENST00000460642.1:n.26G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.41G>T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-11G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465536
  gene symbol: SELM
  hgvsc: ENST00000465536.1:n.13G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000490967
  gene symbol: SELM
  hgvsc: ENST00000490967.1:n.18G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-11G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.38G>T
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 34074
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

22-31503502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503502
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503502
    reference: chr 22
allele count: 1
allele frequency: 7.382253063635022e-5
allele num: 13546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-11G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.41G>A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-11G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000460642
  gene symbol: SELM
  hgvsc: ENST00000460642.1:n.26G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000490967
  gene symbol: SELM
  hgvsc: ENST00000490967.1:n.18G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465536
  gene symbol: SELM
  hgvsc: ENST00000465536.1:n.13G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.38G>A
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

22-31503507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503507
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503507
    reference: chr 22
allele count: 1
allele frequency: 7.839448102853559e-5
allele num: 12756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-16C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.36C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.33C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465536
  gene symbol: SELM
  hgvsc: ENST00000465536.1:n.8C>T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-16C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000460642
  gene symbol: SELM
  hgvsc: ENST00000460642.1:n.21C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000490967
  gene symbol: SELM
  hgvsc: ENST00000490967.1:n.13C>T
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

22-31503518-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503518
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503518
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 10722
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-27T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000460642
  gene symbol: SELM
  hgvsc: ENST00000460642.1:n.10T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-27T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.22T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.25T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000490967
  gene symbol: SELM
  hgvsc: ENST00000490967.1:n.2T>C
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 2.25e1
  variant carriers: 2
hgvs: c.-27T>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

22-31503523-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503523
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503523
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 9890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.17C>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-28-4C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-32C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000460642
  gene symbol: SELM
  hgvsc: ENST00000460642.1:n.5C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.20C>T
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6986
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33048
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-28-4C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

22-31503535-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503535
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503535
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 5954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-44G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.8G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.5G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-28-16G>C
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10855
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25033
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

22-31503536-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503536
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503536
    reference: chr 22
allele count: 1
allele frequency: 1.677289500167729e-4
allele num: 5962
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-28-17C>G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-45C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000491958
  gene symbol: SELM
  hgvsc: ENST00000491958.1:n.4C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.7C>G
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 10802
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 557
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/22-31503540-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31503540
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31503540
    reference: chr 22
allele count: 2
allele frequency: 3.944773175542406e-4
allele num: 5070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198832
  ensembl transcript: ENST00000465447
  gene symbol: SELM
  hgvsc: ENST00000465447.1:n.3G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000384564
  ensembl transcript: ENST00000402395
  gene symbol: SELM
  hgvsc: ENST00000402395.1:c.-28-21G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198832
  ensembl protein: ENSP00000383155
  ensembl transcript: ENST00000400299
  gene symbol: SELM
  hgvsc: ENST00000400299.2:c.-49G>T
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 22453
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2988
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 73
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

22-31518953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518953
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518953
    reference: chr 22
allele count: 1
allele frequency: 1.107665042091272e-4
allele num: 9028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-371G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-48G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.105G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-371G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9027
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

22-31518964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518964
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518964
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 9114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-360G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.116G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-360G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-37G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.4G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6356
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-31518967-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518967
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518967
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 9246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.119G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.7G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-357G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-357G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-34G>C
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

22-31518976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518976
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518976
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 9616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.16G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.128G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-25G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-246G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-348G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-348G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

22-31518985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518985
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518985
    reference: chr 22
allele count: 1
allele frequency: 9.769441187964049e-5
allele num: 10236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-339G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-16G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-313G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.-16G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-339G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-237G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-191G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.25G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.137G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

22-31518987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518987
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518987
    reference: chr 22
allele count: 2
allele frequency: 1.931247585940518e-4
allele num: 10356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-235C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.-14C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-337C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.139C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-189C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-311C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-337C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.27C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-14C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12376
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35454
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum

22-31518988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518988
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518988
    reference: chr 22
allele count: 1
allele frequency: 9.527439024390244e-5
allele num: 10496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-188G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-310G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.28G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.140G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-336G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-336G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-13G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.-13G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-234G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35333
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

22-31518990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518990
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518990
    reference: chr 22
allele count: 1
allele frequency: 9.112447603426281e-5
allele num: 10974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-186G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-11G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-334G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-334G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-232G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.142G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-308G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.-11G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.30G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

22-31518993-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31518993
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31518994
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 11242
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.34dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-330dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-304dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.-7dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.-7dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-182dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.146dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-228dupT
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-330dupT
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-31519002-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519002
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519002
    reference: chr 22
allele count: 2
allele frequency: 1.640689089417555e-4
allele num: 12190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-296T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-220T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-322T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.154T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.42T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-174T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-322T>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.2T>G
  hgvsp: ENSP00000333262.5:p.Met1?
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.2T>G
  hgvsp: ENSP00000384534.3:p.Met1?
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14763
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

22-31519003-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519003
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519003
    reference: chr 22
allele count: 2
allele frequency: 1.633453119895459e-4
allele num: 12244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.155G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.43G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.3G>T
  hgvsp: ENSP00000384534.3:p.Met1?
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-219G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-321G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-295G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.3G>T
  hgvsp: ENSP00000333262.5:p.Met1?
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-173G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-321G>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14892
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

22-31519022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519022
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519022
    reference: chr 22
allele count: 1
allele frequency: 7.108330963889678e-5
allele num: 14068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-302G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.62G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-200G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-154G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.22G>A
  hgvsp: ENSP00000333262.5:p.Gly8Ser
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.22G>A
  hgvsp: ENSP00000384534.3:p.Gly8Ser
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-302G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-276G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.174G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly8Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

22-31519032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519032
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519032
    reference: chr 22
allele count: 32
allele frequency: 2.154882154882155e-3
allele num: 14850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-266G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.32G>A
  hgvsp: ENSP00000384534.3:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-190G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.72G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-292G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.184G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-292G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-144G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.32G>A
  hgvsp: ENSP00000333262.5:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33798
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Arg11Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

22-31519041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519041
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519041
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 15258
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.41C>T
  hgvsp: ENSP00000384534.3:p.Thr14Ile
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-181C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-283C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-257C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.193C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-283C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.41C>T
  hgvsp: ENSP00000333262.5:p.Thr14Ile
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.81C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-135C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8357
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr14Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/22-31519042-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519042
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519042
    reference: chr 22
allele count: 1
allele frequency: 6.48760866744518e-5
allele num: 15414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.82C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.42C>A
  hgvsp: ENST00000331075.5:c.42C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.42C>A
  hgvsp: ENST00000404390.3:c.42C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-282C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-180C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-134C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-256C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.194C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-282C>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34065
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr14Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

22-31519043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519043
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519043
    reference: chr 22
allele count: 1
allele frequency: 6.42756138321121e-5
allele num: 15558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-281C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-281C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.195C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-255C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.83C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.43C>T
  hgvsp: ENSP00000333262.5:p.Arg15Trp
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-133C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.43C>T
  hgvsp: ENSP00000384534.3:p.Arg15Trp
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-179C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg15Trp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

22-31519044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519044
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519044
    reference: chr 22
allele count: 1
allele frequency: 6.459113809585325e-5
allele num: 15482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.44G>A
  hgvsp: ENSP00000333262.5:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.196G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.44G>A
  hgvsp: ENSP00000384534.3:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.84G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-132G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-280G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-280G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-254G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-178G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11587
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34214
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg15Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

22-31519047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519047
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519047
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 15810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-129C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.47C>T
  hgvsp: ENSP00000333262.5:p.Ala16Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.47C>T
  hgvsp: ENSP00000384534.3:p.Ala16Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-277C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.87C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-251C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-175C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.199C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-277C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala16Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

22-31519055-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519055
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519055
    reference: chr 22
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.95G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.55G>T
  hgvsp: ENSP00000333262.5:p.Gly19Cys
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.55G>T
  hgvsp: ENSP00000384534.3:p.Gly19Cys
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-269G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-243G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-269G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-167G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.207G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-121G>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32646
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly19Cys
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

22-31519066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519066
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519066
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 16932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-156C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-258C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.66C>T
  hgvsp: ENST00000331075.5:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.218C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-258C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-232C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-110C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.66C>T
  hgvsp: ENST00000404390.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.106C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro22Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

22-31519077-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519077
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519077
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 17358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-221G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-99G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.229G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.77G>T
  hgvsp: ENSP00000333262.5:p.Gly26Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-247G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.77G>T
  hgvsp: ENSP00000384534.3:p.Gly26Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-247G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-145G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.117G>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33456
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7279
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly26Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

22-31519083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519083
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519083
    reference: chr 22
allele count: 1
allele frequency: 5.722133211261158e-5
allele num: 17476
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.83C>T
  hgvsp: ENSP00000384534.3:p.Ala28Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.235C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.83C>T
  hgvsp: ENSP00000333262.5:p.Ala28Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-139C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.123C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-241C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-241C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-215C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-93C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6625
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala28Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

22-31519092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519092
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519092
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 17434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.244G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-232G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.92G>A
  hgvsp: ENSP00000384534.3:p.Gly31Glu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.92G>A
  hgvsp: ENSP00000333262.5:p.Gly31Glu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.132G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-232G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-84G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-206G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-130G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6056
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly31Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-31519097-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519097
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519097
    reference: chr 22
allele count: 2
allele frequency: 1.148105625717566e-4
allele num: 17420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.97C>A
  hgvsp: ENSP00000333262.5:p.Pro33Thr
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-125C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-201C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-227C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.97C>A
  hgvsp: ENSP00000384534.3:p.Pro33Thr
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-227C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.249C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.137C>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-79C>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33373
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro33Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

22-31519127-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519127
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519128
    reference: chr 22
allele count: 1
allele frequency: 5.963029218843172e-5
allele num: 16770
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-71+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-193+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.105+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.145+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.257+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-219+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-117+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.105+28dupC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-219+28dupC
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum

22-31519133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519133
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519133
    reference: chr 22
allele count: 1
allele frequency: 6.008893161879582e-5
allele num: 16642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-117+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.257+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-219+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.105+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.145+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-193+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-71+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-219+28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.105+28C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

22-31519151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31519151
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31519151
    reference: chr 22
allele count: 2
allele frequency: 1.565190170605729e-4
allele num: 12778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-219+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.105+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-71+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-193+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.257+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.145+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.105+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-117+46T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-219+46T>C
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9986
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

22-31520782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520782
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520782
    reference: chr 22
allele count: 10
allele frequency: 9.560046653027667e-5
allele num: 104602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-49C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1498C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1580C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15140
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14317
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12127
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5725
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17111
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

22-31520786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520786
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520786
    reference: chr 22
allele count: 3
allele frequency: 2.85284999714715e-5
allele num: 105158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-45G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-45G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-45G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1576G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-45G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-45G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1494G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-45G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-45G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12528
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

22-31520788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520788
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520788
    reference: chr 22
allele count: 1
allele frequency: 9.494512171964605e-6
allele num: 105324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-43C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1574C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-43C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-43C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-43C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-43C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-43C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1492C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-43C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

22-31520802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520802
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520802
    reference: chr 22
allele count: 5
allele frequency: 4.664788311906406e-5
allele num: 107186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1560C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1478C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-29C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

22-31520810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520810
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520810
    reference: chr 22
allele count: 1
allele frequency: 9.200647725599883e-6
allele num: 108688
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1552C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1470C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12209
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

22-31520822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520822
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520822
    reference: chr 22
allele count: 1
allele frequency: 8.967323074715735e-6
allele num: 111516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1540C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1458C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-9C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13484
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

22-31520830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520830
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520830
    reference: chr 22
allele count: 1
allele frequency: 8.777935780621829e-6
allele num: 113922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-70-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.106-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1532G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-96-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.106-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-70-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.490-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-96-1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1450G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
hgvs: c.106-1G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

22-31520834-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520834
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520834
    reference: chr 22
allele count: 1
allele frequency: 8.716571946584848e-6
allele num: 114724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-93G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1446G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.109G>T
  hgvsp: ENSP00000384534.3:p.Asp37Tyr
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-93G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.493G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.109G>T
  hgvsp: ENSP00000333262.5:p.Asp37Tyr
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-67G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-67G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1528G>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp37Tyr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

22-31520840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520840
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520840
    reference: chr 22
allele count: 1
allele frequency: 8.612819320276298e-6
allele num: 116106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-61A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.115A>G
  hgvsp: ENSP00000384534.3:p.Ser39Gly
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.115A>G
  hgvsp: ENSP00000333262.5:p.Ser39Gly
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1440A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.499A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-61A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-87A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1522A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-87A>G
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15050
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser39Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

22-31520857-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520857
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520854
    reference: chr 22
allele count: 1
allele frequency: 8.432414200185513e-6
allele num: 118590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.138_140delGAA
  hgvsp: ENSP00000384534.3:p.Lys46del
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-64_-62delGAA
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-64_-62delGAA
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1417_-116-1415delGAA
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.138_140delGAA
  hgvsp: ENSP00000333262.5:p.Lys46del
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.522_524delGAA
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-38_-36delGAA
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-38_-36delGAA
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1499_146-1497delGAA
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys46del
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: AAAG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

22-31520861-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520861
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520861
    reference: chr 22
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.136A>G
  hgvsp: ENSP00000333262.5:p.Lys46Glu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1419A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-66A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.136A>G
  hgvsp: ENSP00000384534.3:p.Lys46Glu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.520A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-66A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1501A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-40A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys46Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

22-31520866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520866
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520866
    reference: chr 22
allele count: 7
allele frequency: 5.893148793588254e-5
allele num: 118782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-35C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.141C>T
  hgvsp: ENST00000331075.5:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.141C>T
  hgvsp: ENST00000404390.3:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-61C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.525C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1496C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-35C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1414C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16134
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38912
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5096
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn47Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

22-31520867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520867
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520867
    reference: chr 22
allele count: 2
allele frequency: 1.683926917571777e-5
allele num: 118770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.142G>A
  hgvsp: ENSP00000333262.5:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.142G>A
  hgvsp: ENSP00000384534.3:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000463528
  gene symbol: INPP5J
  hgvsc: ENST00000463528.1:n.526G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-60G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-60G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-34G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-34G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1413G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1495G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala48Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

22-31520872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520872
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520872
    reference: chr 22
allele count: 1
allele frequency: 8.420768984623676e-6
allele num: 118754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-55C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1408C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.147C>T
  hgvsp: ENST00000331075.5:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.147C>T
  hgvsp: ENST00000404390.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-29C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1490C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-55C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala49Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

22-31520873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520873
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520873
    reference: chr 22
allele count: 1
allele frequency: 8.425735566714975e-6
allele num: 118684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1407C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-54C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-28C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-54C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1489C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.148C>T
  hgvsp: ENST00000404390.3:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.148C>T
  hgvsp: ENST00000331075.5:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu50Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

22-31520876-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520876
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520876
    reference: chr 22
allele count: 3
allele frequency: 2.529809589664884e-5
allele num: 118586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-51G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1486G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-25G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-51G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.151G>C
  hgvsp: ENSP00000384534.3:p.Gly51Arg
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1404G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.151G>C
  hgvsp: ENSP00000333262.5:p.Gly51Arg
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16309
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly51Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

22-31520879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520879
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520879
    reference: chr 22
allele count: 5
allele frequency: 4.222545012329831e-5
allele num: 118412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1401C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.154C>T
  hgvsp: ENSP00000384534.3:p.Pro52Ser
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1483C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.154C>T
  hgvsp: ENSP00000333262.5:p.Pro52Ser
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-22C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49284
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro52Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

22-31520880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520880
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520880
    reference: chr 22
allele count: 2
allele frequency: 1.688846855367155e-5
allele num: 118424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.155C>T
  hgvsp: ENSP00000333262.5:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1400C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-47C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.155C>T
  hgvsp: ENSP00000384534.3:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1482C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro52Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

22-31520881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520881
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520881
    reference: chr 22
allele count: 2
allele frequency: 1.689959947949233e-5
allele num: 118346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-46C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.156C>T
  hgvsp: ENST00000404390.3:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-20C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1399C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.156C>T
  hgvsp: ENST00000331075.5:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1481C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro52Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

22-31520883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520883
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520883
    reference: chr 22
allele count: 4
allele frequency: 3.385412258577788e-5
allele num: 118154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.158C>T
  hgvsp: ENSP00000333262.5:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.158C>T
  hgvsp: ENSP00000384534.3:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-44C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1397C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1479C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser53Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

22-31520884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520884
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520884
    reference: chr 22
allele count: 139
allele frequency: 1.177467174925879e-3
allele num: 118050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-43G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.159G>A
  hgvsp: ENST00000331075.5:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-17G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1396G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.159G>A
  hgvsp: ENST00000404390.3:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1478G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16393
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37381
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser53Ser
num of homozygotes: 1
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

22-31520886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520886
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520886
    reference: chr 22
allele count: 1
allele frequency: 8.486370888353305e-6
allele num: 117836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-15A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-15A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.161A>G
  hgvsp: ENSP00000333262.5:p.Glu54Gly
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.161A>G
  hgvsp: ENSP00000384534.3:p.Glu54Gly
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-41A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-41A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1394A>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1476A>G
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu54Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

22-31520889-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520889
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520889
    reference: chr 22
allele count: 1
allele frequency: 8.520935939603607e-6
allele num: 117358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1391C>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.164C>G
  hgvsp: ENSP00000333262.5:p.Pro55Arg
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.164C>G
  hgvsp: ENSP00000384534.3:p.Pro55Arg
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-38C>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-12C>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1473C>G
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro55Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

22-31520893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520893
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520893
    reference: chr 22
allele count: 1
allele frequency: 8.591212907438273e-6
allele num: 116398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+1G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-34G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1387G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.168G>A
  hgvsp: ENST00000331075.5:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-34G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1469G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+1G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
hgvs: c.167+1G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

22-31520893-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520893
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520893
    reference: chr 22
allele count: 1
allele frequency: 8.591212907438273e-6
allele num: 116398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1387G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-34G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.168G>T
  hgvsp: ENSP00000333262.5:p.Arg56Ser
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+1G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+1G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1469G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+1G>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-34G>T
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35583
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: c.167+1G>T
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

22-31520899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520899
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520899
    reference: chr 22
allele count: 1
allele frequency: 8.679199430644517e-6
allele num: 115218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+7T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-28T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+7T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.174T>C
  hgvsp: ENST00000331075.5:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1381T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+7T>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1463T>C
  variant of: http://identifiers.org/hgnc/8956
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
hgvs: c.167+7T>C
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-31520904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520904
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520904
    reference: chr 22
allele count: 1
allele frequency: 8.839700864522744e-6
allele num: 113126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1376C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-23C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+12C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+12C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.179C>T
  hgvsp: ENSP00000333262.5:p.Ala60Val
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+12C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1458C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6663
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala60Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

22-31520906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520906
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520906
    reference: chr 22
allele count: 18
allele frequency: 1.612123166209898e-4
allele num: 111654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1374C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1456C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.181C>T
  hgvsp: ENSP00000333262.5:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+14C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+14C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+14C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30667
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15678
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro61Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/22-31520915-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520915
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520913
    reference: chr 22
allele count: 1
allele frequency: 9.683541852267886e-6
allele num: 103268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-10_-9delAC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+25_-9+26delAC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+25_-9+26delAC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-10_-9delAC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+25_167+26delAC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.192_193delAC
  hgvsp: ENSP00000333262.5:p.Arg65GlyfsTer28
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1363_-116-1362delAC
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1445_146-1444delAC
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg65GlyfsTer28
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: CCA
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-31520918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520918
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520918
    reference: chr 22
allele count: 1
allele frequency: 9.831681610822715e-6
allele num: 101712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.193C>T
  hgvsp: ENSP00000333262.5:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+26C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+26C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-9C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1362C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1444C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+26C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12975
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg65Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

22-31520919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520919
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520919
    reference: chr 22
allele count: 68
allele frequency: 6.780201810712719e-4
allele num: 100292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-8G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1443G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1361G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+27G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.194G>A
  hgvsp: ENSP00000333262.5:p.Arg65Gln
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-8G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+27G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+27G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21500
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12559
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg65Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

22-31520919-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520919
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520919
    reference: chr 22
allele count: 1
allele frequency: 9.970885015753998e-6
allele num: 100292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-8G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1361G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-8G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+27G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+27G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+27G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.194G>C
  hgvsp: ENSP00000333262.5:p.Arg65Pro
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1443G>C
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29203
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg65Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

22-31520924-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520924
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520924
    reference: chr 22
allele count: 1
allele frequency: 1.042491972811809e-5
allele num: 95924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.-3G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+32G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1438G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.199G>C
  hgvsp: ENSP00000333262.5:p.Ala67Pro
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+32G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+32G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1356G>C
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.-3G>C
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21184
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala67Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

22-31520940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520940
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520940
    reference: chr 22
allele count: 1
allele frequency: 1.284026707755521e-5
allele num: 77880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+48C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.215C>T
  hgvsp: ENSP00000333262.5:p.Ser72Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.14C>T
  hgvsp: ENSP00000392924.2:p.Ser5Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1422C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+48C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.14C>T
  hgvsp: ENSP00000401124.1:p.Ser5Leu
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1340C>T
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+48C>T
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser5Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-31520941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520941
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520941
    reference: chr 22
allele count: 1
allele frequency: 1.287697339617296e-5
allele num: 77658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+49G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.216G>A
  hgvsp: ENST00000331075.5:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1339G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.15G>A
  hgvsp: ENST00000412277.2:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.15G>A
  hgvsp: ENST00000412985.1:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+49G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+49G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1421G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser5Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

22-31520950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31520950
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 31520950
    reference: chr 22
allele count: 2
allele frequency: 2.939706617279595e-5
allele num: 68034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000401124
  ensembl transcript: ENST00000412985
  gene symbol: INPP5J
  hgvsc: ENST00000412985.1:c.24G>A
  hgvsp: ENST00000412985.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000333262
  ensembl transcript: ENST00000331075
  gene symbol: INPP5J
  hgvsc: ENST00000331075.5:c.225G>A
  hgvsp: ENST00000331075.5:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000383150
  ensembl transcript: ENST00000400294
  gene symbol: INPP5J
  hgvsc: ENST00000400294.2:c.-9+58G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384596
  ensembl transcript: ENST00000405300
  gene symbol: INPP5J
  hgvsc: ENST00000405300.1:c.-9+58G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000406570
  ensembl transcript: ENST00000420017
  gene symbol: INPP5J
  hgvsc: ENST00000420017.1:c.-116-1330G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000384534
  ensembl transcript: ENST00000404390
  gene symbol: INPP5J
  hgvsc: ENST00000404390.3:c.167+58G>A
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185133
  ensembl protein: ENSP00000392924
  ensembl transcript: ENST00000412277
  gene symbol: INPP5J
  hgvsc: ENST00000412277.2:c.24G>A
  hgvsp: ENST00000412277.2:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185133
  ensembl transcript: ENST00000461241
  gene symbol: INPP5J
  hgvsc: ENST00000461241.1:n.146-1412G>A
  variant of: http://identifiers.org/hgnc/8956
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro8Pro
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 12340
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1149
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 354
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.009646302250804e-4
allele num: 4976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 3.02444e5

FS
type: SiteQuality
SIO_000300: 5.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

QD
type: SiteQuality
SIO_000300: 9.59e0

VQSLOD
type: SiteQuality
SIO_000300: -5.417999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.538935056940597e-4
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

QD
type: SiteQuality
SIO_000300: 9.59e0

VQSLOD
type: SiteQuality
SIO_000300: -5.417999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.36e-2

DP
type: SiteQuality
SIO_000300: 3.02444e5

GenotypeQuality
all individuals: 515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.603592046183451e-4
allele num: 6236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.38e-2

QD
type: SiteQuality
SIO_000300: 1.271e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.152e0

VQSLOD
type: SiteQuality
SIO_000300: -1.638e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.514e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

DP
type: SiteQuality
SIO_000300: 2.82442e5

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.042e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.03e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.34087e5

VQSLOD
type: SiteQuality
SIO_000300: -2.232e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 1966
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.29e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 2.1848e5

VQSLOD
type: SiteQuality
SIO_000300: -2.051e0

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.68e-2

DP
type: SiteQuality
SIO_000300: 1.7977e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.707e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.259452411994785e-4
allele num: 3068
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.849e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.73e-2

DP
type: SiteQuality
SIO_000300: 1.79524e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 7.880220646178094e-4
allele num: 2538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.09e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.024e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.444e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 1.77187e5

GenotypeQuality
all individuals: 143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.535496957403651e-4
allele num: 3944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.447e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.135e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.36783e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.88e0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.144e1

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

FS
type: SiteQuality
SIO_000300: 4.708e0

DP
type: SiteQuality
SIO_000300: 2.46681e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.779999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.51751e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 999
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 7.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.67541e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1430
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
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GenotypeQuality
all individuals: 1141
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.886792452830189e-3
allele num: 530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.804e0

VQSLOD
type: SiteQuality
SIO_000300: -2.165e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 2.83076e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

MQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

QD
type: SiteQuality
SIO_000300: 1.832e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
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GenotypeQuality
all individuals: 491
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variant carriers: 2

GenotypeQuality
all individuals: 1231
bin: 1.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 708
bin: 3.25e1
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GenotypeQuality
all individuals: 132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 1.25e1
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GenotypeQuality
all individuals: 10629
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.311258278145695e-3
allele num: 302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.318034306907742e-4
allele num: 4314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.89978e5

FS
type: SiteQuality
SIO_000300: 8.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4336
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
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allele count: 1
allele frequency: 7.727975270479134e-4
allele num: 1294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.625e0

MQRankSum
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FS
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ClippingRankSum
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SIO_000300: -2.89e-1

InbreedingCoeff
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SIO_000300: -7.149999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 2.93431e5

QD
type: SiteQuality
SIO_000300: 1.139e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 2.547121752419766e-4
allele num: 3926
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 536
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -2.087e0

DP
type: SiteQuality
SIO_000300: 2.97928e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.97e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.68e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 3.05181e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.127115146512588e-4
allele num: 4846
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.209e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.484e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 3.21632e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1314
num of homozygotes: 0

East Asian
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allele frequency: 3.424657534246575e-3
allele num: 584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.58e-2

DP
type: SiteQuality
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QD
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SIO_000300: 1.308e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -4.66e-1

FS
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
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SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
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SIO_000300: -3.058e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

East Asian
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allele frequency: 1.694915254237288e-3
allele num: 590
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
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allele frequency: 4.937458854509546e-3
allele num: 6076
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African
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Other
type: Population
allele count: 2
allele frequency: 1.333333333333333e-2
allele num: 150
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
allele num: 600
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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VQSLOD
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QD
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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num of homozygotes: 0

InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.840909090909091e-3
allele num: 352
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -4.06e-1

ReadPosRankSum
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SIO_000300: -6.840000000000001e-1

QD
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MQRankSum
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SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.556178026766262e-4
allele num: 6426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.63e0

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.08e-2

BaseQRankSum
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SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 1.266e0

VQSLOD
type: SiteQuality
SIO_000300: -2.222e0

DP
type: SiteQuality
SIO_000300: 3.4987e5

ClippingRankSum
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SIO_000300: -1.115e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.811594202898551e-3
allele num: 552
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 3.46976e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.28e-2

BaseQRankSum
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QD
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VQSLOD
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SIO_000300: -1.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.08e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 3.503e1

DP
type: SiteQuality
SIO_000300: 3.51742e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.709986320109439e-4
allele num: 5848
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.5866e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.09e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.959e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: 4.06e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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VQSLOD
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SIO_000300: -8.2e-2

BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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African
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Other
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.52e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.5149e5

VQSLOD
type: SiteQuality
SIO_000300: -2.215e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 207
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.292723081988805e-4
allele num: 6074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.567e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

FS
type: SiteQuality
SIO_000300: 5.767e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

DP
type: SiteQuality
SIO_000300: 3.45404e5

QD
type: SiteQuality
SIO_000300: 7.07e0

MQ
type: SiteQuality
SIO_000300: 6.035e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 412
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.124087591240876e-4
allele num: 1096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.26e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.2e-2

QD
type: SiteQuality
SIO_000300: 5.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

DP
type: SiteQuality
SIO_000300: 2.82795e5

FS
type: SiteQuality
SIO_000300: 5.953e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
all individuals: 604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5383
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.416195856873823e-4
allele num: 1062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 1.427e0

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.962e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.18e-2

DP
type: SiteQuality
SIO_000300: 2.67635e5

GenotypeQuality
all individuals: 578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 990
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variant carriers: 0

GenotypeQuality
all individuals: 2957
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 362
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variant carriers: 0

GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 498
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 966
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.235493434985176e-4
allele num: 4722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.35e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.011e1

VQSLOD
type: SiteQuality
SIO_000300: -1.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 3.163e0

DP
type: SiteQuality
SIO_000300: 2.26639e5

GenotypeQuality
all individuals: 715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5926
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.75e1
variant carriers: 11

African
type: Population
allele count: 9
allele frequency: 1.030455690405313e-3
allele num: 8734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.46611132146914e-5
allele num: 10564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.772e1

FS
type: SiteQuality
SIO_000300: 4.289e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.085876e6

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

GenotypeQuality
all individuals: 746
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 5358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
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variant carriers: 0

GenotypeQuality
all individuals: 5111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 905
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.972651605231867e-4
allele num: 10092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.534e0

VQSLOD
type: SiteQuality
SIO_000300: 8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.099145e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4463
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 5470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
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GenotypeQuality
all individuals: 227
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variant carriers: 1

GenotypeQuality
all individuals: 2028
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 3264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23686
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.647392178181938e-5
allele num: 60702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.873e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.112724e6

GenotypeQuality
all individuals: 266
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 3.25e1
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GenotypeQuality
all individuals: 218
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variant carriers: 1

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 36578
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variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2622
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.499415052645263e-5
allele num: 61544
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.125112511251125e-4
allele num: 8888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.905e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 2.348e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.216949e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
all individuals: 392
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40992
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.25e1
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GenotypeQuality
all individuals: 1554
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
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GenotypeQuality
all individuals: 3933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
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GenotypeQuality
all individuals: 427
bin: 5.75e1
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GenotypeQuality
all individuals: 749
bin: 7.25e1
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GenotypeQuality
all individuals: 535
bin: 7.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.20889748549323e-4
allele num: 8272
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 2.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

VQSLOD
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SIO_000300: 7.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 8.387854386847844e-5
allele num: 11922
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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DP
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MQ
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 7.3e-2

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 13128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.554146462762651e-5
allele num: 64344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
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FS
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MQ
type: SiteQuality
SIO_000300: 5.861e1

BaseQRankSum
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SIO_000300: -1.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.363923e6

VQSLOD
type: SiteQuality
SIO_000300: -2.969e-1

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.828e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.539408866995074e-5
allele num: 64960
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65730
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European (Finnish)
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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DP
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.517911353976928e-4
allele num: 6588
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Latino
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InbreedingCoeff
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QD
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11388
num of homozygotes: 0

East Asian
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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allele num: 65736
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Other
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QD
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VQSLOD
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65724
num of homozygotes: 0

African
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Latino
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Other
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South Asian
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East Asian
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European (Finnish)
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allele num: 6580
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 1.41978e6

QD
type: SiteQuality
SIO_000300: 1.213e1

GenotypeQuality
all individuals: 1424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 5140
bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49728
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522626225714112e-5
allele num: 65676
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.88e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 1.133e0

DP
type: SiteQuality
SIO_000300: 1.42012e6

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.170554115759595e-5
allele num: 16206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 8.92e0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

DP
type: SiteQuality
SIO_000300: 1.419671e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.383e0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.853224610822832e-4
allele num: 16188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

DP
type: SiteQuality
SIO_000300: 1.418365e6

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.676e0

FS
type: SiteQuality
SIO_000300: 1.643e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 1770
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variant carriers: 0

GenotypeQuality
all individuals: 400
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.576379778503218e-5
allele num: 65554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167406023815083e-4
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.416773e6

FS
type: SiteQuality
SIO_000300: 3.666e0

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.763e0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 49478
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 1118
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variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 5115
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050826774055769e-5
allele num: 65556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

DP
type: SiteQuality
SIO_000300: 1.416916e6

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 1843
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variant carriers: 0

GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 163
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GenotypeQuality
all individuals: 49329
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 860
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variant carriers: 0

GenotypeQuality
all individuals: 1109
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variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052223544852425e-5
allele num: 65526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.416503e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.246e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 5074
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 263
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GenotypeQuality
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GenotypeQuality
all individuals: 2018
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variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.862428606903402e-4
allele num: 16108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528117359413203e-5
allele num: 65440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.413563e6

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 385
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variant carriers: 136

GenotypeQuality
all individuals: 1082
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.873114463176575e-5
allele num: 11270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068376068376068e-4
allele num: 9360
num of homozygotes: 0

East Asian
type: Population
allele count: 132
allele frequency: 1.548205489092189e-2
allele num: 8526
num of homozygotes: 1

South Asian
type: Population
allele count: 4
allele frequency: 2.485398285075183e-4
allele num: 16094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529285823520416e-5
allele num: 65390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 1.414533e6

QD
type: SiteQuality
SIO_000300: 1.131e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 2330
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 380
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 5
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532097441397273e-5
allele num: 65270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.334e0

QD
type: SiteQuality
SIO_000300: 5.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.791e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.408624e6

MQRankSum
type: SiteQuality
SIO_000300: -1.016e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.537704514700455e-5
allele num: 65032
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.03e-1

MQ
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InbreedingCoeff
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SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.403047e6

ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.548946716232962e-5
allele num: 64560
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 5.299e0

MQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.089799476896251e-4
allele num: 9176
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64560
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.299e0

DP
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SIO_000300: 1.388113e6

VQSLOD
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ClippingRankSum
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SIO_000300: -8.169999999999999e-1

InbreedingCoeff
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SIO_000300: 1.8e-3

BaseQRankSum
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SIO_000300: -1.956e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
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SIO_000300: 6.67e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

African
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allele frequency: 1.102779003087781e-4
allele num: 9068
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.356e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 8.82e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

DP
type: SiteQuality
SIO_000300: 1.371347e6

QD
type: SiteQuality
SIO_000300: 1.744e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.318e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591900410710306e-5
allele num: 62818
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

FS
type: SiteQuality
SIO_000300: 2.129e0

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.979e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.343276e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.678980480722698e-5
allele num: 61990
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 11
allele frequency: 1.036953242835596e-3
allele num: 10608
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 57252
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East Asian
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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QD
type: SiteQuality
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VQSLOD
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56368
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 764
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South Asian
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allele frequency: 7.039279177812192e-5
allele num: 14206
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55576
num of homozygotes: 0

Latino
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allele frequency: 2.144082332761578e-4
allele num: 9328
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
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allele num: 748
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African
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allele count: 4
allele frequency: 5.045408678102926e-4
allele num: 7928
num of homozygotes: 0

South Asian
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allele count: 61
allele frequency: 4.331771055247834e-3
allele num: 14082
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.295e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17755
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.407657657657658e-4
allele num: 7104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.164861e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 3.295e0

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
all individuals: 1889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25361
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.883593897155773e-5
allele num: 53090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 3.774e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e0

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

DP
type: SiteQuality
SIO_000300: 1.101157e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

QD
type: SiteQuality
SIO_000300: 1.049e1

GenotypeQuality
all individuals: 2225
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.902587519025875e-4
allele num: 5256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 8.83389e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.367e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.124796880077999e-5
allele num: 12308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.971e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.776e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 8.80012e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.973e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3