16-5141790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141790
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141790
    reference: chr 16
allele count: 19
allele frequency: 1.647303624067973e-4
allele num: 115340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.381+5G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.342+5G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*158+5G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*116+5G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.753+5G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1224G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1224G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*159+5G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 32785
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5928
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 3
hgvs: c.342+5G>A
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

16-5141796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141796
    reference: chr 16
allele count: 1
allele frequency: 8.570008398608231e-6
allele num: 116686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1230T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1230T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.752T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*115T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.341T>C
  hgvsp: ENSP00000398502.3:p.Leu114Pro
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*158T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.380T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*157T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu114Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

16-5141797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141797
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141797
    reference: chr 16
allele count: 1
allele frequency: 8.567511994516792e-6
allele num: 116720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*157C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.379C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.340C>T
  hgvsp: ENST00000427587.4:c.340C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.751C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*114C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*156C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1231C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1231C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42778
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
hgvs: c.340C>T
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

16-5141798-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141798
    reference: chr 16
allele count: 81
allele frequency: 6.936237990032369e-4
allele num: 116778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.750G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1232G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*156G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*113G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*155G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.378G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.339G>C
  hgvsp: ENSP00000398502.3:p.Leu113Phe
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1232G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33140
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14678
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu113Phe
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

16-5141808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141808
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141808
    reference: chr 16
allele count: 13
allele frequency: 1.107702794819359e-4
allele num: 117360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.329G>A
  hgvsp: ENSP00000398502.3:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*146G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1242G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1242G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.740G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.368G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg110Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-5141809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141809
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141809
    reference: chr 16
allele count: 5
allele frequency: 4.254957024934048e-5
allele num: 117510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*145C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.328C>T
  hgvsp: ENSP00000398502.3:p.Arg110Trp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.367C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*144C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.739C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1243C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1243C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3514
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg110Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-5141818-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141818
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141818
    reference: chr 16
allele count: 1
allele frequency: 8.449514152936206e-6
allele num: 118350
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.319C>A
  hgvsp: ENSP00000398502.3:p.Gln107Lys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*93C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*136C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1252C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1252C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.730C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.358C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*135C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33667
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln107Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-5141819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141819
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141819
    reference: chr 16
allele count: 1
allele frequency: 8.445090024659663e-6
allele num: 118412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.357C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*134C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1253C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.729C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1253C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.318C>T
  hgvsp: ENST00000427587.4:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr106Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

16-5141827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141827
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141827
    reference: chr 16
allele count: 2
allele frequency: 1.68219897049423e-5
allele num: 118892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*127G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.721G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1261G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1261G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.349G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*84G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.310G>A
  hgvsp: ENSP00000398502.3:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu104Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-5141839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141839
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141839
    reference: chr 16
allele count: 1
allele frequency: 8.375630266177531e-6
allele num: 119394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*115C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1273C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.298C>G
  hgvsp: ENSP00000398502.3:p.Leu100Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*72C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1273C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*114C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.337C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.709C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu100Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

16-5141843-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141843
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141843
    reference: chr 16
allele count: 6
allele frequency: 5.015128972400073e-5
allele num: 119638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1277G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1277G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*110G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*111G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.333G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*68G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.294G>C
  hgvsp: ENSP00000398502.3:p.Glu98Asp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.705G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu98Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

16-5141843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141843
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141843
    reference: chr 16
allele count: 2
allele frequency: 1.671709657466691e-5
allele num: 119638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.705G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.333G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*110G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1277G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.294G>A
  hgvsp: ENST00000427587.4:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1277G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*68G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44831
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu98Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

16-5141845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141845
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141845
    reference: chr 16
allele count: 2
allele frequency: 1.669142561466175e-5
allele num: 119822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*109G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*66G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.331G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.703G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1279G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.292G>A
  hgvsp: ENSP00000398502.3:p.Glu98Lys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1279G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6352
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu98Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

16-5141846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141846
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141846
    reference: chr 16
allele count: 25
allele frequency: 2.085766727849157e-4
allele num: 119860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.702G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*107G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1280G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.330G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*65G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1280G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.291G>A
  hgvsp: ENST00000427587.4:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34447
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala97Ala
num of homozygotes: 1
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

16-5141847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141847
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141847
    reference: chr 16
allele count: 14
allele frequency: 1.167444963308873e-4
allele num: 119920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.329C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*106C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1281C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.290C>T
  hgvsp: ENSP00000398502.3:p.Ala97Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*107C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1281C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.701C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34455
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15452
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala97Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

16-5141848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141848
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141848
    reference: chr 16
allele count: 1
allele frequency: 8.33541718763024e-6
allele num: 119970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*105G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.289G>A
  hgvsp: ENSP00000398502.3:p.Ala97Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1282G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.328G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.700G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*63G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*106G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1282G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala97Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

16-5141851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141851
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141851
    reference: chr 16
allele count: 17
allele frequency: 1.416241794128428e-4
allele num: 120036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.325C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1285C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*60C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.697C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.286C>T
  hgvsp: ENST00000427587.4:c.286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1285C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*103C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15489
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34443
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu96Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-5141852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141852
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141852
    reference: chr 16
allele count: 1420
allele frequency: 1.196353648878629e-2
allele num: 118694
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.285G>A
  hgvsp: ENST00000427587.4:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*101G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.324G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*102G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1286G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.696G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*59G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1286G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14837
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 32780
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 5967
  bin: 6.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 39
hgvs: p.Ala95Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-5141853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141853
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141853
    reference: chr 16
allele count: 120
allele frequency: 9.988180652894076e-4
allele num: 120142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1287C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.695C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.284C>T
  hgvsp: ENSP00000398502.3:p.Ala95Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.323C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*100C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1287C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 32687
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5973
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala95Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

16-5141855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141855
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141855
    reference: chr 16
allele count: 1410
allele frequency: 1.194085466032079e-2
allele num: 118082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*98A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*56A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.282A>G
  hgvsp: ENST00000427587.4:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.693A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1289A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.321A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1289A>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 32439
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 9.75e1
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 5907
  bin: 6.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 18
hgvs: p.Glu94Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

16-5141862-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141862
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141862
    reference: chr 16
allele count: 1
allele frequency: 8.324869715788949e-6
allele num: 120122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.314T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*91T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1296T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.275T>C
  hgvsp: ENSP00000398502.3:p.Leu92Pro
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.686T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*92T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1296T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu92Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

16-5141866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141866
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141866
    reference: chr 16
allele count: 4
allele frequency: 3.330835206928137e-5
allele num: 120090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*87G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.271G>A
  hgvsp: ENSP00000398502.3:p.Glu91Lys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.310G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1300G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.682G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1300G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Glu91Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

16-5141867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141867
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141867
    reference: chr 16
allele count: 1
allele frequency: 8.326949338840222e-6
allele num: 120092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.309C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1301C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1301C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.270C>T
  hgvsp: ENST00000427587.4:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*86C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.681C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45065
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp90Asp
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

16-5141871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141871
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141871
    reference: chr 16
allele count: 1
allele frequency: 8.330278897737497e-6
allele num: 120044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*82T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*40T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*83T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.266T>C
  hgvsp: ENSP00000398502.3:p.Leu89Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.305T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.677T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1305T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1305T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu89Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

16-5141876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141876
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141876
    reference: chr 16
allele count: 2
allele frequency: 1.6679454248257e-5
allele num: 119908
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.261G>A
  hgvsp: ENST00000427587.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1310G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.672G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1310G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.300G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*78G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu87Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

16-5141878-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141878
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141878
    reference: chr 16
allele count: 1
allele frequency: 8.345016356232058e-6
allele num: 119832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*33G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.670G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*76G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.259G>C
  hgvsp: ENSP00000398502.3:p.Glu87Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*75G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.298G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1312G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1312G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44585
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu87Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

16-5141879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141879
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141879
    reference: chr 16
allele count: 2
allele frequency: 1.66939334245935e-5
allele num: 119804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1313A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*74A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1313A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.669A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*75A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.258A>G
  hgvsp: ENST00000427587.4:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.297A>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16055
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr86Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-5141881-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141881
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141881
    reference: chr 16
allele count: 1
allele frequency: 8.354358468813179e-6
allele num: 119698
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.256A>C
  hgvsp: ENSP00000398502.3:p.Thr86Pro
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1315A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1315A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*30A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.667A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*73A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*72A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.295A>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr86Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

16-5141885-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141885
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141885
    reference: chr 16
allele count: 1
allele frequency: 8.396446623788812e-6
allele num: 119098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*26C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.663C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*68C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.291C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1319C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.252C>G
  hgvsp: ENST00000427587.4:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1319C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*69C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val84Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

16-5141889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141889
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141889
    reference: chr 16
allele count: 1
allele frequency: 8.448086508405846e-6
allele num: 118370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.659C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1323C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*65C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.248C>T
  hgvsp: ENSP00000398502.3:p.Ala83Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1323C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.287C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala83Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

16-5141893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141893
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141893
    reference: chr 16
allele count: 36
allele frequency: 3.051054308766696e-4
allele num: 117992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.244G>A
  hgvsp: ENSP00000398502.3:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*61G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.283G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.655G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1327G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1327G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30422
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15714
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu82Lys
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

16-5141894-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141894
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141894
    reference: chr 16
allele count: 215
allele frequency: 1.834251881174604e-3
allele num: 117214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*59C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1328C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.282C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*60C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*17C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.243C>G
  hgvsp: ENSP00000398502.3:p.His81Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1328C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.654C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15692
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 30168
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 6237
  bin: 6.75e1
  variant carriers: 6
hgvs: p.His81Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

16-5141906-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141906
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141906
    reference: chr 16
allele count: 2
allele frequency: 1.755279001597304e-5
allele num: 113942
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-10C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*48C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1340C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-10C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1340C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-10C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-10C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-10C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23880
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-5141906-GACAGAGTGAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141906
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141895
    reference: chr 16
allele count: 1
allele frequency: 8.776395007986519e-6
allele num: 113942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: GACAGAGTGAGA
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-5141907-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141907
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141907
    reference: chr 16
allele count: 15
allele frequency: 1.316875318244869e-4
allele num: 113906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*47T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-11T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-11T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-11T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1341T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1341T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-11T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-11T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14210
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23861
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34971
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-5141912-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141912
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141912
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 111454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-16C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*42C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-16C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1346C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1346C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-16C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-16C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-16C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-5141916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141916
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141916
    reference: chr 16
allele count: 1
allele frequency: 9.088265231932529e-6
allele num: 110032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1350C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1350C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-20C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

16-5141920-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141920
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141920
    reference: chr 16
allele count: 112
allele frequency: 1.033954321375159e-3
allele num: 108322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-24A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-24A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*34A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1354A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1354A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-24A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-24A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-24A>C
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

16-5141930-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141930
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141930
    reference: chr 16
allele count: 1
allele frequency: 9.766197238119422e-6
allele num: 102394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*24A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-34A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-34A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1364A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-34A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-34A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1364A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-34A>C
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5763
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-5141931-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141931
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141931
    reference: chr 16
allele count: 2
allele frequency: 1.962670016290161e-5
allele num: 101902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1365G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-35G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-35G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-35G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*23G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-35G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1365G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-35G>T
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5729
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

16-5141932-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141932
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141932
    reference: chr 16
allele count: 2
allele frequency: 1.996964613787044e-5
allele num: 100152
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-36C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-36C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*22C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1366C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-36C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-36C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-36C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1366C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20832
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/16-5141937-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141937
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141937
    reference: chr 16
allele count: 5
allele frequency: 5.070993914807302e-5
allele num: 98600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*17T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1371T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-41T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1371T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-41T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-41T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-41T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-41T>G
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 3.75e1
  variant carriers: 0
hgvs: c.*17T>G
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

16-5141937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141937
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141937
    reference: chr 16
allele count: 3
allele frequency: 3.042596348884381e-5
allele num: 98600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-41T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-41T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-41T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-41T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1371T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1371T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-41T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20159
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 3.75e1
  variant carriers: 0
hgvs: c.*17T>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-5141938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141938
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141938
    reference: chr 16
allele count: 2
allele frequency: 2.026014020017018e-5
allele num: 98716
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1372T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1372T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 0
hgvs: c.*16T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

16-5141940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141940
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141940
    reference: chr 16
allele count: 2
allele frequency: 2.030250735965892e-5
allele num: 98510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-44G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-44G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1374G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1374G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-44G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-44G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-44G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.75e1
  variant carriers: 0
hgvs: c.*15-1G>A
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

16-5141944-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141944
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141944
    reference: chr 16
allele count: 1
allele frequency: 1.029590428927373e-5
allele num: 97126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-48T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-48T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-48T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-5T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1378T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-48T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1378T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-48T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 1.75e1
  variant carriers: 0
hgvs: c.*15-5T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-5141948-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5141948
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5141948
    reference: chr 16
allele count: 11
allele frequency: 1.142501038637308e-4
allele num: 96280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-9T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-52T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-52T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.652-52T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.241-52T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.280-52T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.241-1382T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.160-1382T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19656
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13187
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

16-5143434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143434
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143434
    reference: chr 16
allele count: 1
allele frequency: 8.511507558218711e-6
allele num: 117488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+51G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+51G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1538G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1495G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1538G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+51G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2019G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+51G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14167
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4743
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

16-5143435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143435
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143435
    reference: chr 16
allele count: 3
allele frequency: 2.554060956921505e-5
allele num: 117460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1539C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+50C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1496C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+50C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+50C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+50C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2018C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1539C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

16-5143437-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143437
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143437
    reference: chr 16
allele count: 6
allele frequency: 5.11727078891258e-5
allele num: 117250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1498T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1541T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+48T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+48T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+48T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1541T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+48T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2016T>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13263
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

16-5143440-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143440
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143440
    reference: chr 16
allele count: 1
allele frequency: 8.493723138600575e-6
allele num: 117734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1544A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1544A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+45A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1501A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+45A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+45A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+45A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2013A>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13332
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/16-5143443-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143443
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143443
    reference: chr 16
allele count: 1
allele frequency: 8.490550017830155e-6
allele num: 117778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+42G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+42G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+42G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+42G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1504G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2010G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1547G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1547G>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

16-5143448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143448
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143448
    reference: chr 16
allele count: 1
allele frequency: 8.48147645542136e-6
allele num: 117904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+37G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+37G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1552G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1552G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+37G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2005G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1509G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+37G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14281
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-5143453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143453
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143453
    reference: chr 16
allele count: 48
allele frequency: 4.066280370031514e-4
allele num: 118044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1514G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+2000G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1557G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1557G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15494
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23649
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4735
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-5143454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143454
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143454
    reference: chr 16
allele count: 1
allele frequency: 8.440243079000674e-6
allele num: 118480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1558C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1558C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1999C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1515C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5464
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-5143455-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143455
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143455
    reference: chr 16
allele count: 1
allele frequency: 8.431845393682861e-6
allele num: 118598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+30C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+30C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1998C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1516C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+30C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1559C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+30C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1559C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

16-5143459-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143459
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143459
    reference: chr 16
allele count: 1
allele frequency: 8.399690891375198e-6
allele num: 119052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+26G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1520G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1563G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+26G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+26G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1994G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+26G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1563G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5645
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

16-5143460-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143460
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143460
    reference: chr 16
allele count: 1
allele frequency: 8.390387971539804e-6
allele num: 119184
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+25A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1564A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1564A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+25A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1521A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1993A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+25A>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+25A>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-5143463-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143463
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143462
    reference: chr 16
allele count: 11
allele frequency: 9.212113091250167e-5
allele num: 119408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+21delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1989delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1525delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1568delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+21delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1568delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+21delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+21delG
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27037
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7508
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: GC
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

16-5143464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143464
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143464
    reference: chr 16
allele count: 1
allele frequency: 8.373245805003851e-6
allele num: 119428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1989G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1568G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1525G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1568G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+21G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-5143465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143465
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143465
    reference: chr 16
allele count: 13
allele frequency: 1.086920169893983e-4
allele num: 119604
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1526C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1988C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1569C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1569C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+20C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26935
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17343
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

16-5143469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143469
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143469
    reference: chr 16
allele count: 7
allele frequency: 5.833916725005834e-5
allele num: 119988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1573T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1530T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1984T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1573T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17559
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-5143476-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143476
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143476
    reference: chr 16
allele count: 1
allele frequency: 8.312413758707254e-6
allele num: 120302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1580T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651+9T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1580T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240+9T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1977T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1537T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279+9T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240+9T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-5143485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143485
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143485
    reference: chr 16
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1589G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1968G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1589G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.279G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.240G>A
  hgvsp: ENST00000427587.4:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.240G>A
  hgvsp: ENST00000458008.4:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1546G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.651G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: c.240G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

16-5143492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143492
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143492
    reference: chr 16
allele count: 2
allele frequency: 1.653083827880912e-5
allele num: 120986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1961T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.644T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.233T>C
  hgvsp: ENSP00000389710.3:p.Ile78Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1553T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1596T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.233T>C
  hgvsp: ENSP00000398502.3:p.Ile78Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1596T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.272T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5904
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile78Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

16-5143498-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143498
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143498
    reference: chr 16
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1559A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.227A>C
  hgvsp: ENSP00000398502.3:p.Glu76Ala
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1955A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.266A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.227A>C
  hgvsp: ENSP00000389710.3:p.Glu76Ala
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.638A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1602A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1602A>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu76Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-5143503-GAGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143503
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143499
    reference: chr 16
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.257_260delTTCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1611_*57-1608delTTCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1946_159+1949delTTCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.218_221delTTCT
  hgvsp: ENSP00000389710.3:p.Phe73SerfsTer55
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.218_221delTTCT
  hgvsp: ENSP00000398502.3:p.Phe73SerfsTer27
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1568_*15-1565delTTCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1611_*15-1608delTTCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.629_632delTTCT
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4735
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe73SerfsTer27
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: GAGAA
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

16-5143507-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143507
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143507
    reference: chr 16
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.218T>C
  hgvsp: ENSP00000389710.3:p.Phe73Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1611T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.218T>C
  hgvsp: ENSP00000398502.3:p.Phe73Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.629T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.257T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1946T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1611T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1568T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe73Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

16-5143512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143512
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143512
    reference: chr 16
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1616G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.252G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.624G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1573G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1616G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.213G>A
  hgvsp: ENST00000458008.4:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.213G>A
  hgvsp: ENST00000427587.4:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1941G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4738
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg71Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

16-5143513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143513
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143513
    reference: chr 16
allele count: 2
allele frequency: 1.648587160803192e-5
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.251G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.212G>A
  hgvsp: ENSP00000389710.3:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1617G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1574G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.623G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1940G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.212G>A
  hgvsp: ENSP00000398502.3:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1617G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg71Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

16-5143514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5143514
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5143514
    reference: chr 16
allele count: 13
allele frequency: 1.071546323771843e-4
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.211C>T
  hgvsp: ENSP00000389710.3:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*15-1618C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*15-1575C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*57-1618C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.159+1939C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000586444
  gene symbol: FAM86A
  hgvsc: ENST00000586444.1:n.622C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.211C>T
  hgvsp: ENSP00000398502.3:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000585975
  gene symbol: FAM86A
  hgvsc: ENST00000585975.1:n.250C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Arg71Trp
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 3056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2130
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.04675505931612e-3
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.544640098856966e-4
allele num: 6474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.424772036474164e-4
allele num: 63168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.269e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.941e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 4.029e1

FS
type: SiteQuality
SIO_000300: 2.642e0

DP
type: SiteQuality
SIO_000300: 1.59072e6

QD
type: SiteQuality
SIO_000300: 3.9e-1

GenotypeQuality
all individuals: 886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565729316715726e-5
allele num: 63868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

MQ
type: SiteQuality
SIO_000300: 4.328e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.298e0

FS
type: SiteQuality
SIO_000300: 9.619999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.52e0

QD
type: SiteQuality
SIO_000300: 8.81e0

DP
type: SiteQuality
SIO_000300: 1.60012e6

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63884
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.375e0

MQ
type: SiteQuality
SIO_000300: 4.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.336e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.717e0

QD
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VQSLOD
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SIO_000300: -2.609e0

DP
type: SiteQuality
SIO_000300: 1.60173e6

MQRankSum
type: SiteQuality
SIO_000300: -1.336e0

ReadPosRankSum
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SIO_000300: 1.25e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
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allele count: 81
allele frequency: 4.942640956797657e-3
allele num: 16388
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.773e0

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
SIO_000300: 1.479e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQ
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SIO_000300: 4.415e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

DP
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SIO_000300: 1.604071e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 3
allele frequency: 3.295254833040422e-4
allele num: 9104
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.486142583231654e-4
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.34375681315601e-5
allele num: 64214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 3.819e0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.613162e6

MQ
type: SiteQuality
SIO_000300: 4.619e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.585e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.665629860031104e-5
allele num: 64300
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.74246384387524e-4
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.614658e6

MQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.486e1

VQSLOD
type: SiteQuality
SIO_000300: -3.262e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058873358746294e-4
allele num: 9444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64786
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: -7.622e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 4.918e1

QD
type: SiteQuality
SIO_000300: 5.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

DP
type: SiteQuality
SIO_000300: 1.623429e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64830
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.624121e6

VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.271e0

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.738e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.083333333333333e-4
allele num: 9600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
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VQSLOD
type: SiteQuality
SIO_000300: -6.994e-1

ReadPosRankSum
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MQ
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.272e0

DP
type: SiteQuality
SIO_000300: 1.629314e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528397627926881e-5
allele num: 65428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.635693e6

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.952e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 8.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 9.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.45e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.14968891057704e-5
allele num: 65576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.638797e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.751e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
all individuals: 3524
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013376570733685e-4
allele num: 9868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52494815176284e-5
allele num: 65576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.751e0

DP
type: SiteQuality
SIO_000300: 1.638797e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.814e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.071e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3518
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044510747122937e-5
allele num: 65692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.111e1

QD
type: SiteQuality
SIO_000300: 1.137e1

VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

DP
type: SiteQuality
SIO_000300: 1.640301e6

GenotypeQuality
all individuals: 820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.091173617846751e-3
allele num: 16496
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.129640900791235e-5
allele num: 65720
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

MQ
type: SiteQuality
SIO_000300: 4.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.094e0

DP
type: SiteQuality
SIO_000300: 1.642586e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.51e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.307e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3535
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.672393346915194e-4
allele num: 65774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.642447e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.164e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 4.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002606777621817e-4
allele num: 9974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

QD
type: SiteQuality
SIO_000300: 5.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQ
type: SiteQuality
SIO_000300: 4.757e1

DP
type: SiteQuality
SIO_000300: 1.642347e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.058e0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 6360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.601922306768122e-3
allele num: 9988
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

DP
type: SiteQuality
SIO_000300: 1.643463e6

MQ
type: SiteQuality
SIO_000300: 4.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.097e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 34

GenotypeQuality
all individuals: 895
bin: 2.25e1
variant carriers: 34

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 49

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 40

GenotypeQuality
all individuals: 43428
bin: 6.25e1
variant carriers: 37

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 276
bin: 5.25e1
variant carriers: 54

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 34

GenotypeQuality
all individuals: 1260
bin: 7.75e1
variant carriers: 40

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 42

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1401
bin: 7.25e1
variant carriers: 50

GenotypeQuality
all individuals: 3802
bin: 9.75e1
variant carriers: 801

African
type: Population
allele count: 576
allele frequency: 5.895598771750256e-2
allele num: 9770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 89
allele frequency: 1.366287995087504e-2
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 2.61684518013632e-3
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 4.542278127183787e-3
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 653
allele frequency: 1.004553565934404e-2
allele num: 65004
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.474635163307853e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.484304932735426e-3
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.128e0

QD
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.619e0

MQ
type: SiteQuality
SIO_000300: 4.803e1

MQRankSum
type: SiteQuality
SIO_000300: -3.876e0

DP
type: SiteQuality
SIO_000300: 1.813304e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43328
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6193
bin: 9.75e1
variant carriers: 122

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517174414370676e-5
allele num: 65912
num of homozygotes: 0

African
type: Population
allele count: 115
allele frequency: 1.145874850538063e-2
allele num: 10036
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.462004500605851e-4
allele num: 11554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 9.31e0

MQ
type: SiteQuality
SIO_000300: 4.46e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

FS
type: SiteQuality
SIO_000300: 1.787e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.879e0

DP
type: SiteQuality
SIO_000300: 1.810177e6

GenotypeQuality
all individuals: 517
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 921
bin: 2.25e1
variant carriers: 33

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 1355
bin: 7.25e1
variant carriers: 49

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 49

GenotypeQuality
all individuals: 1244
bin: 7.75e1
variant carriers: 43

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 35

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 34

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 42

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 30

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 55

GenotypeQuality
all individuals: 3788
bin: 9.75e1
variant carriers: 791

GenotypeQuality
all individuals: 43181
bin: 6.25e1
variant carriers: 34

European (Finnish)
type: Population
allele count: 88
allele frequency: 1.36986301369863e-2
allele num: 6424
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 2.557856272838002e-3
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.514672686230248e-3
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 647
allele frequency: 1.001547987616099e-2
allele num: 64600
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 4.56060340291177e-3
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 577
allele frequency: 5.93865788390284e-2
allele num: 9716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.839038e6

MQRankSum
type: SiteQuality
SIO_000300: -3.887e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

QD
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 1.944e0

VQSLOD
type: SiteQuality
SIO_000300: -4.744e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e0

MQ
type: SiteQuality
SIO_000300: 4.816e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.652e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -3.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.684e0

QD
type: SiteQuality
SIO_000300: 7.91e0

DP
type: SiteQuality
SIO_000300: 1.67441e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 4.81e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036191401505951e-5
allele num: 65872
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

FS
type: SiteQuality
SIO_000300: 5.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.673872e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 4.983e1

VQSLOD
type: SiteQuality
SIO_000300: -1.426e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

FS
type: SiteQuality
SIO_000300: 1.033e0

VQSLOD
type: SiteQuality
SIO_000300: -5.438e-1

DP
type: SiteQuality
SIO_000300: 1.673851e6

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.623e1

MQ
type: SiteQuality
SIO_000300: 4.754e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-5
allele num: 65840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.773e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.281e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.276e1

DP
type: SiteQuality
SIO_000300: 1.67232e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.041085059149104e-5
allele num: 65766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.641e1

FS
type: SiteQuality
SIO_000300: 1.781e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.094e0

DP
type: SiteQuality
SIO_000300: 1.669707e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.313e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.044047365377005e-5
allele num: 65702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.667596e6

MQ
type: SiteQuality
SIO_000300: 4.21e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523414886810274e-5
allele num: 65642
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.637e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.83e-1

FS
type: SiteQuality
SIO_000300: 1.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.665523e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1408
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65310
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 1.657602e6

QD
type: SiteQuality
SIO_000300: 9.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 4.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.133e0

MQ
type: SiteQuality
SIO_000300: 4.855e1

GenotypeQuality
all individuals: 3581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.647669e6

FS
type: SiteQuality
SIO_000300: 1.2512e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 4.823e1

VQSLOD
type: SiteQuality
SIO_000300: -3.548e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.668e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.512e1

GenotypeQuality
all individuals: 742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.775003060350104e-3
allele num: 16338
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.273856997125104e-5
allele num: 64698
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.641016e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 4.62e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

FS
type: SiteQuality
SIO_000300: 5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.524e-1

GenotypeQuality
all individuals: 1264
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 15

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 190
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 14

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 3109
bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 42349
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 11

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

African
type: Population
allele count: 204
allele frequency: 2.318708797453967e-2
allele num: 8798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.875393769688485e-4
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547843853512058e-5
allele num: 64606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 3.133e0

QD
type: SiteQuality
SIO_000300: 7.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

DP
type: SiteQuality
SIO_000300: 1.638496e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -2.898e0

MQ
type: SiteQuality
SIO_000300: 4.475e1

GenotypeQuality
all individuals: 1716
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 375
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600512163892445e-5
allele num: 62480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.304375236414071e-5
allele num: 15862
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.128e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

QD
type: SiteQuality
SIO_000300: 6.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.766e0

DP
type: SiteQuality
SIO_000300: 1.514026e6

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 2.668e0

MQ
type: SiteQuality
SIO_000300: 4.257e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 7763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 689
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.132759401903036e-4
allele num: 8828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.128e0

MQ
type: SiteQuality
SIO_000300: 4.257e1

DP
type: SiteQuality
SIO_000300: 1.514026e6

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 6.29e0

FS
type: SiteQuality
SIO_000300: 2.668e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.921475693332479e-4
allele num: 62452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.133016088828461e-4
allele num: 8826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.125976867771178e-4
allele num: 6398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.34e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

QD
type: SiteQuality
SIO_000300: 1.273e1

FS
type: SiteQuality
SIO_000300: 6.29e-1

DP
type: SiteQuality
SIO_000300: 1.513928e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

GenotypeQuality
all individuals: 3361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11710
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26888
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 1.419858e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 3.269e1

VQSLOD
type: SiteQuality
SIO_000300: -3.844e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
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GenotypeQuality
all individuals: 298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
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variant carriers: 0

GenotypeQuality
all individuals: 3979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
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variant carriers: 0

GenotypeQuality
all individuals: 5009
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variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21788
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657055743355207e-5
allele num: 60348
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.342565e6

QD
type: SiteQuality
SIO_000300: 1.299e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.604e0

VQSLOD
type: SiteQuality
SIO_000300: -3.801e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 3.767e1

GenotypeQuality
all individuals: 14551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 9.75e1
variant carriers: 111

GenotypeQuality
all individuals: 963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10432
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.893564962074871e-4
allele num: 8174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 11
allele frequency: 1.338199513381995e-2
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 94
allele frequency: 6.118198385837021e-3
allele num: 15364
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.048975058063213e-5
allele num: 59418
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e-1

DP
type: SiteQuality
SIO_000300: 1.253304e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.357e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.16e1

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.778599886169607e-5
allele num: 56224
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.557e0

DP
type: SiteQuality
SIO_000300: 1.140431e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.992e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 3.828e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.787373990133696e-5
allele num: 55948
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.027749229188078e-4
allele num: 9730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7528
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -8.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQ
type: SiteQuality
SIO_000300: 4.044e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

DP
type: SiteQuality
SIO_000300: 1.138999e6

VQSLOD
type: SiteQuality
SIO_000300: -4.306e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

FS
type: SiteQuality
SIO_000300: 2.3419e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.73550850399167e-4
allele num: 5762
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.052188552188552e-4
allele num: 9504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.158e1

FS
type: SiteQuality
SIO_000300: 7.173e0

MQ
type: SiteQuality
SIO_000300: 3.407e1

DP
type: SiteQuality
SIO_000300: 1.12593e6

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.483835005574136e-4
allele num: 14352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54068
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 3.85e1

FS
type: SiteQuality
SIO_000300: 1.671e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 1.111796e6

VQSLOD
type: SiteQuality
SIO_000300: -2.771e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.548568469334912e-5
allele num: 54068
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.111796e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.85e1

FS
type: SiteQuality
SIO_000300: 1.671e0

QD
type: SiteQuality
SIO_000300: 1.253e1

VQSLOD
type: SiteQuality
SIO_000300: -2.771e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.694399290675336e-5
allele num: 54136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 754
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.074e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.700688328029013e-5
allele num: 54044
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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African
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South Asian
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.423284941645317e-4
allele num: 7026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52638
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.430615164520744e-3
allele num: 6990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.108459e6

VQSLOD
type: SiteQuality
SIO_000300: -2.19e0

MQ
type: SiteQuality
SIO_000300: 4.429e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 8.217000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.457e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.86053517632465e-5
allele num: 11286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64716
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 3.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
type: SiteQuality
SIO_000300: -4.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.643002e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545356204605162e-5
allele num: 64710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.774622892635315e-4
allele num: 11270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.552e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

MQ
type: SiteQuality
SIO_000300: 3.202e1

DP
type: SiteQuality
SIO_000300: 1.644105e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

FS
type: SiteQuality
SIO_000300: 2.069e0

VQSLOD
type: SiteQuality
SIO_000300: -3.868e0

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543591010125957e-5
allele num: 64784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.479483963447411e-4
allele num: 11162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 3.206e1

VQSLOD
type: SiteQuality
SIO_000300: -5.291e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.199e0

DP
type: SiteQuality
SIO_000300: 1.650245e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 795
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541639687972127e-5
allele num: 64866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.899e0

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

MQ
type: SiteQuality
SIO_000300: 3.238e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.654732e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.061571125265393e-4
allele num: 9420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.001e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

VQSLOD
type: SiteQuality
SIO_000300: -3.139e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.663826e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.107e0

MQ
type: SiteQuality
SIO_000300: 3.089e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058425063505504e-4
allele num: 9448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
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MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.164e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.258e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 7
allele frequency: 6.192498230714791e-4
allele num: 11304
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.230769230769231e-4
allele num: 16250
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African
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allele count: 2
allele frequency: 2.120890774125132e-4
allele num: 9430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 5.066789497927222e-4
allele num: 65130
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.599816007359706e-4
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
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VQSLOD
type: SiteQuality
SIO_000300: -2.959e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.514e1

FS
type: SiteQuality
SIO_000300: 2.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.531487380543984e-5
allele num: 65296
num of homozygotes: 0

South Asian
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9504
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
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MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.72e1

QD
type: SiteQuality
SIO_000300: 1.378e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.12369871402327e-5
allele num: 16330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.565e0

FS
type: SiteQuality
SIO_000300: 4.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11422
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.783683e6

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.561e0

BaseQRankSum
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SIO_000300: -1.675e0

QD
type: SiteQuality
SIO_000300: 2.807e1

MQ
type: SiteQuality
SIO_000300: 4.18e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042970379641218e-4
allele num: 9588
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 4.286e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.155e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.788476e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.03777501037775e-4
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.51952590791673e-4
allele num: 65810
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

MQ
type: SiteQuality
SIO_000300: 4.258e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 1.599e1

DP
type: SiteQuality
SIO_000300: 1.797191e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65806
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.800642e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.746e0

MQ
type: SiteQuality
SIO_000300: 4.471e1

VQSLOD
type: SiteQuality
SIO_000300: -2.078e0

FS
type: SiteQuality
SIO_000300: 2.534e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
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allele count: 10
allele frequency: 1.029018316526034e-3
allele num: 9718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.035638394754417e-5
allele num: 65884
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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Latino
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 7
allele frequency: 1.05909764880322e-4
allele num: 66094
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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QD
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DP
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8640
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Latino
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allele num: 11516
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele num: 66486
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Other
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QD
type: SiteQuality
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MQRankSum
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.832064e6

MQ
type: SiteQuality
SIO_000300: 4.645e1

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: -6.264e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 1.212e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

GenotypeQuality
all individuals: 45493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

MQ
type: SiteQuality
SIO_000300: 4.714e1

VQSLOD
type: SiteQuality
SIO_000300: -1.817e0

FS
type: SiteQuality
SIO_000300: 3.142e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.833663e6

QD
type: SiteQuality
SIO_000300: 1.32e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 2.454e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.14e-1

DP
type: SiteQuality
SIO_000300: 1.834946e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

QD
type: SiteQuality
SIO_000300: 1.076e1

MQ
type: SiteQuality
SIO_000300: 4.859e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.396e0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.835568e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.535e1

FS
type: SiteQuality
SIO_000300: 8.94e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.575e0

FS
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 4.834e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

DP
type: SiteQuality
SIO_000300: 1.836165e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.149e0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.836435e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.236e0

MQ
type: SiteQuality
SIO_000300: 4.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.313e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.575e0

QD
type: SiteQuality
SIO_000300: 1.104e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0