17-33690457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690457
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690457
    reference: chr 17
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.370C>T
  hgvsp: ENSP00000378067.1:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.370C>T
  hgvsp: ENSP00000312402.4:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg124Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-33690461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690461
    reference: chr 17
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.366G>A
  hgvsp: ENST00000308377.4:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.366G>A
  hgvsp: ENST00000591682.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.366G>A
  hgvsp: ENST00000394566.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45893
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys122Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-33690464-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690464
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690464
    reference: chr 17
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.363C>G
  hgvsp: ENST00000394566.1:c.363C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.363C>G
  hgvsp: ENST00000308377.4:c.363C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.363C>G
  hgvsp: ENST00000591682.1:c.363C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 982
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1562
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genotype quality: GenotypeQuality
  all individuals: 4980
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1669
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genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val121Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-33690466-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690466
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690466
    reference: chr 17
allele count: 60605
allele frequency: 5.00206338725652e-1
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.361G>T
  hgvsp: ENSP00000378067.1:p.Val121Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.361G>T
  hgvsp: ENSP00000464806.1:p.Val121Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.361G>T
  hgvsp: ENSP00000312402.4:p.Val121Phe
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 1961
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.25e1
  variant carriers: 1007
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 3444
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 6.25e1
  variant carriers: 3614
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 2.75e1
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.25e1
  variant carriers: 2197
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 3.75e1
  variant carriers: 1425
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 8.75e1
  variant carriers: 2777
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 9.75e1
  variant carriers: 7645
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 5.25e1
  variant carriers: 2874
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 6.75e1
  variant carriers: 3755
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 7.25e1
  variant carriers: 3712
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 8.25e1
  variant carriers: 3267
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 4.75e1
  variant carriers: 2413
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 7.75e1
  variant carriers: 3577
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 8.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 52491
  bin: 9.75e1
  variant carriers: 44119
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 9.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.75e1
  variant carriers: 93
hgvs: p.Val121Phe
num of homozygotes: 15741
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-33690469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690469
    reference: chr 17
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.358T>C
  hgvsp: ENSP00000312402.4:p.Ser120Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.358T>C
  hgvsp: ENSP00000378067.1:p.Ser120Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.358T>C
  hgvsp: ENSP00000464806.1:p.Ser120Pro
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5270
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser120Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-33690471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690471
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690471
    reference: chr 17
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.356G>A
  hgvsp: ENSP00000378067.1:p.Arg119His
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.356G>A
  hgvsp: ENSP00000312402.4:p.Arg119His
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.356G>A
  hgvsp: ENSP00000464806.1:p.Arg119His
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27818
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg119His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-33690472-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690472
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690472
    reference: chr 17
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.355C>A
  hgvsp: ENSP00000312402.4:p.Arg119Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.355C>A
  hgvsp: ENSP00000378067.1:p.Arg119Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.355C>A
  hgvsp: ENSP00000464806.1:p.Arg119Ser
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27817
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg119Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-33690474-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690474
    reference: chr 17
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.353A>T
  hgvsp: ENSP00000378067.1:p.Asp118Val
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.353A>T
  hgvsp: ENSP00000312402.4:p.Asp118Val
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.353A>T
  hgvsp: ENSP00000464806.1:p.Asp118Val
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2372
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genotype quality: GenotypeQuality
  all individuals: 79
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 12214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27817
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp118Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

17-33690482-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690482
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690482
    reference: chr 17
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.345C>G
  hgvsp: ENSP00000312402.4:p.Phe115Leu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.345C>G
  hgvsp: ENSP00000464806.1:p.Phe115Leu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.345C>G
  hgvsp: ENSP00000378067.1:p.Phe115Leu
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27803
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe115Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

17-33690482-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690482
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690484
    reference: chr 17
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: GAA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.343_344dupTT
  hgvsp: ENSP00000378067.1:p.Pro116SerfsTer38
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.343_344dupTT
  hgvsp: ENSP00000464806.1:p.Pro116SerfsTer?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.343_344dupTT
  hgvsp: ENSP00000312402.4:p.Pro116SerfsTer38
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27803
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro116SerfsTer38
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

17-33690485-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690485
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690484
    reference: chr 17
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.341delC
  hgvsp: ENSP00000378067.1:p.Pro114LeufsTer39
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.341delC
  hgvsp: ENSP00000464806.1:p.Pro114LeufsTer?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.341delC
  hgvsp: ENSP00000312402.4:p.Pro114LeufsTer39
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27803
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro114LeufsTer39
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/17-33690499-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690499
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690499
    reference: chr 17
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.328T>G
  hgvsp: ENSP00000378067.1:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.328T>G
  hgvsp: ENSP00000312402.4:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.328T>G
  hgvsp: ENSP00000464806.1:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.328T>G
  hgvsp: ENSP00000393615.2:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp110Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-33690505-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690505
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690505
    reference: chr 17
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.322A>T
  hgvsp: ENSP00000393615.2:p.Lys108Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.322A>T
  hgvsp: ENSP00000464806.1:p.Lys108Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.322A>T
  hgvsp: ENSP00000378067.1:p.Lys108Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.322A>T
  hgvsp: ENSP00000312402.4:p.Lys108Ter
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys108Ter
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

17-33690516-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690516
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690515
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.310delT
  hgvsp: ENSP00000464806.1:p.Tyr104ThrfsTer?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.310delT
  hgvsp: ENSP00000312402.4:p.Tyr104ThrfsTer49
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.310delT
  hgvsp: ENSP00000378067.1:p.Tyr104ThrfsTer49
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.310delT
  hgvsp: ENSP00000393615.2:p.Tyr104ThrfsTer?
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr104ThrfsTer49
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: TA
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-33690521-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690521
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690521
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.306T>C
  hgvsp: ENST00000591682.1:c.306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.306T>C
  hgvsp: ENST00000394566.1:c.306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.306T>C
  hgvsp: ENST00000441608.2:c.306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.306T>C
  hgvsp: ENST00000308377.4:c.306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys102Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-33690524-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690524
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690524
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.303G>C
  hgvsp: ENSP00000464806.1:p.Arg101Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.303G>C
  hgvsp: ENSP00000312402.4:p.Arg101Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.303G>C
  hgvsp: ENSP00000393615.2:p.Arg101Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.303G>C
  hgvsp: ENSP00000378067.1:p.Arg101Ser
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg101Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-33690540-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690540
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690540
    reference: chr 17
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.287C>A
  hgvsp: ENSP00000378067.1:p.Thr96Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.287C>A
  hgvsp: ENSP00000312402.4:p.Thr96Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.287C>A
  hgvsp: ENSP00000464806.1:p.Thr96Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.287C>A
  hgvsp: ENSP00000393615.2:p.Thr96Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.287C>A
  hgvsp: ENSP00000468095.1:p.Thr96Asn
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr96Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-33690541-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690541
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690541
    reference: chr 17
allele count: 8
allele frequency: 6.593913817546405e-5
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.286A>T
  hgvsp: ENSP00000468095.1:p.Thr96Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.286A>T
  hgvsp: ENSP00000393615.2:p.Thr96Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.286A>T
  hgvsp: ENSP00000312402.4:p.Thr96Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.286A>T
  hgvsp: ENSP00000464806.1:p.Thr96Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.286A>T
  hgvsp: ENSP00000378067.1:p.Thr96Ser
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr96Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

17-33690546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690546
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690546
    reference: chr 17
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.281T>C
  hgvsp: ENSP00000464806.1:p.Phe94Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.281T>C
  hgvsp: ENSP00000312402.4:p.Phe94Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.281T>C
  hgvsp: ENSP00000468095.1:p.Phe94Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.281T>C
  hgvsp: ENSP00000378067.1:p.Phe94Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.281T>C
  hgvsp: ENSP00000393615.2:p.Phe94Ser
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9984
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe94Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-33690548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690548
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690548
    reference: chr 17
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.279C>T
  hgvsp: ENST00000308377.4:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.279C>T
  hgvsp: ENST00000394566.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.279C>T
  hgvsp: ENST00000441608.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.279C>T
  hgvsp: ENST00000591682.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.279C>T
  hgvsp: ENST00000589811.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27782
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe93Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-33690550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690550
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690550
    reference: chr 17
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.277T>C
  hgvsp: ENSP00000378067.1:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.277T>C
  hgvsp: ENSP00000312402.4:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.277T>C
  hgvsp: ENSP00000464806.1:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.277T>C
  hgvsp: ENSP00000468095.1:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.277T>C
  hgvsp: ENSP00000393615.2:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe93Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

17-33690553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690553
    reference: chr 17
allele count: 7
allele frequency: 5.76938926893596e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.274G>A
  hgvsp: ENSP00000464806.1:p.Ala92Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.274G>A
  hgvsp: ENSP00000468095.1:p.Ala92Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.274G>A
  hgvsp: ENSP00000312402.4:p.Ala92Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.274G>A
  hgvsp: ENSP00000393615.2:p.Ala92Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.274G>A
  hgvsp: ENSP00000378067.1:p.Ala92Thr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala92Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

17-33690556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690556
    reference: chr 17
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.271C>T
  hgvsp: ENSP00000378067.1:p.Gln91Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.271C>T
  hgvsp: ENSP00000393615.2:p.Gln91Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.271C>T
  hgvsp: ENSP00000468095.1:p.Gln91Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.271C>T
  hgvsp: ENSP00000464806.1:p.Gln91Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.271C>T
  hgvsp: ENST00000427966.1:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.271C>T
  hgvsp: ENSP00000312402.4:p.Gln91Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.271C>T
  hgvsp: ENST00000430814.1:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27778
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln91Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-33690579-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690579
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690579
    reference: chr 17
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.248A>G
  hgvsp: ENSP00000397454.1:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.248A>G
  hgvsp: ENSP00000395140.1:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.248A>G
  hgvsp: ENSP00000464806.1:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.248A>G
  hgvsp: ENSP00000378067.1:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.248A>G
  hgvsp: ENSP00000312402.4:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.248A>G
  hgvsp: ENSP00000468095.1:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.248A>G
  hgvsp: ENSP00000393615.2:p.Glu83Gly
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu83Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

17-33690592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690592
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690592
    reference: chr 17
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.235C>T
  hgvsp: ENSP00000378067.1:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.235C>T
  hgvsp: ENSP00000393615.2:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.235C>T
  hgvsp: ENSP00000468602.1:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.235C>T
  hgvsp: ENSP00000397454.1:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.235C>T
  hgvsp: ENSP00000468095.1:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.235C>T
  hgvsp: ENSP00000464806.1:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.235C>T
  hgvsp: ENSP00000395140.1:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.235C>T
  hgvsp: ENSP00000312402.4:p.Gln79Ter
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27771
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln79Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-33690602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690602
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690602
    reference: chr 17
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.225G>A
  hgvsp: ENST00000441608.2:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.225G>A
  hgvsp: ENST00000591682.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.225G>A
  hgvsp: ENST00000394566.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.225G>A
  hgvsp: ENST00000308377.4:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.225G>A
  hgvsp: ENST00000588579.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.225G>A
  hgvsp: ENST00000430814.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.225G>A
  hgvsp: ENST00000589811.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.225G>A
  hgvsp: ENST00000427966.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu75Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

17-33690606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690606
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690606
    reference: chr 17
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.221G>A
  hgvsp: ENSP00000378067.1:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.221G>A
  hgvsp: ENSP00000312402.4:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.221G>A
  hgvsp: ENSP00000393615.2:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.221G>A
  hgvsp: ENSP00000397454.1:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.221G>A
  hgvsp: ENSP00000395140.1:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.221G>A
  hgvsp: ENSP00000464806.1:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.221G>A
  hgvsp: ENSP00000468095.1:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.221G>A
  hgvsp: ENSP00000468602.1:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly74Glu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

17-33690616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690616
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690616
    reference: chr 17
allele count: 3
allele frequency: 2.474185992808366e-5
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.211G>A
  hgvsp: ENSP00000468602.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.211G>A
  hgvsp: ENSP00000393615.2:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.211G>A
  hgvsp: ENSP00000464806.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.211G>A
  hgvsp: ENSP00000468095.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.211G>A
  hgvsp: ENSP00000312402.4:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.211G>A
  hgvsp: ENSP00000397454.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.211G>A
  hgvsp: ENSP00000395140.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.211G>A
  hgvsp: ENSP00000378067.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val71Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-33690617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690617
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690617
    reference: chr 17
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.210C>T
  hgvsp: ENST00000427966.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.210C>T
  hgvsp: ENST00000441608.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.210C>T
  hgvsp: ENST00000394566.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.210C>T
  hgvsp: ENST00000430814.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.210C>T
  hgvsp: ENST00000589811.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.210C>T
  hgvsp: ENST00000308377.4:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.210C>T
  hgvsp: ENST00000591682.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.210C>T
  hgvsp: ENST00000588579.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro70Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-33690617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690617
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690617
    reference: chr 17
allele count: 42
allele frequency: 3.462660972513067e-4
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.210C>G
  hgvsp: ENST00000591682.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.210C>G
  hgvsp: ENST00000427966.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.210C>G
  hgvsp: ENST00000394566.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.210C>G
  hgvsp: ENST00000441608.2:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.210C>G
  hgvsp: ENST00000589811.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.210C>G
  hgvsp: ENST00000588579.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.210C>G
  hgvsp: ENST00000430814.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.210C>G
  hgvsp: ENST00000308377.4:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro70Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-33690619-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690619
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690619
    reference: chr 17
allele count: 15893
allele frequency: 1.310417044573803e-1
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.208C>A
  hgvsp: ENSP00000464806.1:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.208C>A
  hgvsp: ENSP00000397454.1:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.208C>A
  hgvsp: ENSP00000378067.1:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.208C>A
  hgvsp: ENSP00000468602.1:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.208C>A
  hgvsp: ENSP00000468095.1:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.208C>A
  hgvsp: ENSP00000393615.2:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.208C>A
  hgvsp: ENSP00000312402.4:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.208C>A
  hgvsp: ENSP00000395140.1:p.Pro70Thr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 3.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 5.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 4.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 2.75e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 5.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 4.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 9.75e1
  variant carriers: 12700
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 5
hgvs: p.Pro70Thr
num of homozygotes: 1334
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-33690621-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690621
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690621
    reference: chr 17
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.206A>G
  hgvsp: ENSP00000468602.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.206A>G
  hgvsp: ENSP00000464806.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.206A>G
  hgvsp: ENSP00000468095.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.206A>G
  hgvsp: ENSP00000397454.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.206A>G
  hgvsp: ENSP00000395140.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.206A>G
  hgvsp: ENSP00000378067.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.206A>G
  hgvsp: ENSP00000393615.2:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.206A>G
  hgvsp: ENSP00000312402.4:p.His69Arg
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His69Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-33690623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690623
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690623
    reference: chr 17
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.204G>A
  hgvsp: ENST00000591682.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.204G>A
  hgvsp: ENST00000308377.4:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.204G>A
  hgvsp: ENST00000427966.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.204G>A
  hgvsp: ENST00000430814.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.204G>A
  hgvsp: ENST00000589811.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.204G>A
  hgvsp: ENST00000588579.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.204G>A
  hgvsp: ENST00000441608.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.204G>A
  hgvsp: ENST00000394566.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15053
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu68Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-33690625-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690625
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690625
    reference: chr 17
allele count: 6
allele frequency: 4.948127133879826e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.202G>T
  hgvsp: ENSP00000464806.1:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.202G>T
  hgvsp: ENSP00000397454.1:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.202G>T
  hgvsp: ENSP00000378067.1:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.202G>T
  hgvsp: ENSP00000395140.1:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.202G>T
  hgvsp: ENSP00000312402.4:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.202G>T
  hgvsp: ENSP00000393615.2:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.202G>T
  hgvsp: ENSP00000468095.1:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.202G>T
  hgvsp: ENSP00000468602.1:p.Glu68Ter
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu68Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-33690629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690629
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690629
    reference: chr 17
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.198G>A
  hgvsp: ENST00000589811.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.198G>A
  hgvsp: ENST00000441608.2:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.198G>A
  hgvsp: ENST00000430814.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.198G>A
  hgvsp: ENST00000308377.4:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.198G>A
  hgvsp: ENST00000427966.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.198G>A
  hgvsp: ENST00000591682.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.198G>A
  hgvsp: ENST00000588579.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.198G>A
  hgvsp: ENST00000394566.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys66Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

17-33690630-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690630
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690630
    reference: chr 17
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.197A>C
  hgvsp: ENSP00000464806.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.197A>C
  hgvsp: ENSP00000468095.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.197A>C
  hgvsp: ENSP00000468602.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.197A>C
  hgvsp: ENSP00000397454.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.197A>C
  hgvsp: ENSP00000393615.2:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.197A>C
  hgvsp: ENSP00000312402.4:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.197A>C
  hgvsp: ENSP00000378067.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.197A>C
  hgvsp: ENSP00000395140.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys66Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-33690643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690643
    reference: chr 17
allele count: 3
allele frequency: 2.473492406378312e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.184C>T
  hgvsp: ENSP00000468095.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.551C>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.184C>T
  hgvsp: ENSP00000395140.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.184C>T
  hgvsp: ENSP00000464806.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.184C>T
  hgvsp: ENSP00000378067.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.184C>T
  hgvsp: ENSP00000312402.4:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.184C>T
  hgvsp: ENSP00000393615.2:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.184C>T
  hgvsp: ENSP00000468602.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.184C>T
  hgvsp: ENSP00000397454.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20561
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg62Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-33690647-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690647
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690647
    reference: chr 17
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.180G>T
  hgvsp: ENST00000591682.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.180G>T
  hgvsp: ENST00000588579.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.180G>T
  hgvsp: ENST00000589811.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.180G>T
  hgvsp: ENST00000427966.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.180G>T
  hgvsp: ENST00000430814.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.180G>T
  hgvsp: ENST00000441608.2:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.547G>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.180G>T
  hgvsp: ENST00000394566.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.180G>T
  hgvsp: ENST00000308377.4:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val60Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

17-33690655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690655
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690655
    reference: chr 17
allele count: 6
allele frequency: 4.94600610007419e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.172G>A
  hgvsp: ENSP00000468602.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.172G>A
  hgvsp: ENSP00000464806.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.539G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.172G>A
  hgvsp: ENSP00000378067.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.172G>A
  hgvsp: ENSP00000468095.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.172G>A
  hgvsp: ENSP00000393615.2:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.172G>A
  hgvsp: ENSP00000397454.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.172G>A
  hgvsp: ENSP00000312402.4:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.172G>A
  hgvsp: ENSP00000395140.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly58Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-33690665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690665
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690665
    reference: chr 17
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.162A>G
  hgvsp: ENST00000591682.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.529A>G
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.162A>G
  hgvsp: ENST00000430814.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.162A>G
  hgvsp: ENST00000441608.2:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.162A>G
  hgvsp: ENST00000427966.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.162A>G
  hgvsp: ENST00000588579.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.162A>G
  hgvsp: ENST00000394566.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.162A>G
  hgvsp: ENST00000308377.4:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.162A>G
  hgvsp: ENST00000589811.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu54Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-33690671-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690671
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690671
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.156T>G
  hgvsp: ENST00000588579.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.156T>G
  hgvsp: ENST00000430814.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.523T>G
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.156T>G
  hgvsp: ENST00000394566.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.156T>G
  hgvsp: ENST00000427966.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.156T>G
  hgvsp: ENST00000308377.4:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.156T>G
  hgvsp: ENST00000591682.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.156T>G
  hgvsp: ENST00000589811.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.156T>G
  hgvsp: ENST00000441608.2:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala52Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

17-33690675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690675
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690675
    reference: chr 17
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.152G>A
  hgvsp: ENSP00000468095.1:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.152G>A
  hgvsp: ENSP00000397454.1:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.152G>A
  hgvsp: ENSP00000464806.1:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.152G>A
  hgvsp: ENSP00000393615.2:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.152G>A
  hgvsp: ENSP00000468602.1:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.519G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.152G>A
  hgvsp: ENSP00000312402.4:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.152G>A
  hgvsp: ENSP00000395140.1:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.152G>A
  hgvsp: ENSP00000378067.1:p.Cys51Tyr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20554
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys51Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

17-33690682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690682
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690682
    reference: chr 17
allele count: 6
allele frequency: 4.945843018942579e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.145G>A
  hgvsp: ENSP00000312402.4:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.512G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.145G>A
  hgvsp: ENST00000592122.1:c.145G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.145G>A
  hgvsp: ENSP00000397454.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.145G>A
  hgvsp: ENSP00000468095.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.145G>A
  hgvsp: ENSP00000378067.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.145G>A
  hgvsp: ENSP00000393615.2:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.145G>A
  hgvsp: ENSP00000468602.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.145G>A
  hgvsp: ENSP00000395140.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.145G>A
  hgvsp: ENSP00000464806.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala49Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

17-33690684-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690684
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690684
    reference: chr 17
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.143G>C
  hgvsp: ENSP00000393615.2:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.143G>C
  hgvsp: ENSP00000397454.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.143G>C
  hgvsp: ENSP00000395140.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.143G>C
  hgvsp: ENSP00000378067.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.143G>C
  hgvsp: ENSP00000312402.4:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.143G>C
  hgvsp: ENSP00000468095.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.510G>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.143G>C
  hgvsp: ENSP00000464806.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.143G>C
  hgvsp: ENSP00000465777.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.143G>C
  hgvsp: ENSP00000468602.1:p.Arg48Pro
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg48Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-33690684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690684
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690684
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.143G>A
  hgvsp: ENSP00000397454.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.510G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.143G>A
  hgvsp: ENSP00000465777.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.143G>A
  hgvsp: ENSP00000395140.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.143G>A
  hgvsp: ENSP00000468095.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.143G>A
  hgvsp: ENSP00000378067.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.143G>A
  hgvsp: ENSP00000393615.2:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.143G>A
  hgvsp: ENSP00000312402.4:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.143G>A
  hgvsp: ENSP00000468602.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.143G>A
  hgvsp: ENSP00000464806.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg48Gln
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-33690685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690685
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690685
    reference: chr 17
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.142C>T
  hgvsp: ENSP00000397454.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.142C>T
  hgvsp: ENSP00000465777.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.142C>T
  hgvsp: ENSP00000464806.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.142C>T
  hgvsp: ENSP00000378067.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.142C>T
  hgvsp: ENSP00000393615.2:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.509C>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.142C>T
  hgvsp: ENSP00000312402.4:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.142C>T
  hgvsp: ENSP00000468602.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.142C>T
  hgvsp: ENSP00000395140.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.142C>T
  hgvsp: ENSP00000468095.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg48Trp
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-33690693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690693
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690693
    reference: chr 17
allele count: 19
allele frequency: 1.566286910787595e-4
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.134G>A
  hgvsp: ENSP00000312402.4:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.134G>A
  hgvsp: ENSP00000395140.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.134G>A
  hgvsp: ENSP00000468602.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.134G>A
  hgvsp: ENSP00000378067.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.134G>A
  hgvsp: ENSP00000468095.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.134G>A
  hgvsp: ENSP00000397454.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.134G>A
  hgvsp: ENSP00000464806.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.134G>A
  hgvsp: ENSP00000465777.1:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.134G>A
  hgvsp: ENSP00000393615.2:p.Arg45Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.501G>A
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 4535
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg45Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

17-33690698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690698
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690698
    reference: chr 17
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.129G>A
  hgvsp: ENST00000308377.4:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.129G>A
  hgvsp: ENST00000427966.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.129G>A
  hgvsp: ENST00000394566.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.129G>A
  hgvsp: ENST00000588579.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.129G>A
  hgvsp: ENST00000592122.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.129G>A
  hgvsp: ENST00000441608.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.129G>A
  hgvsp: ENST00000589811.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.129G>A
  hgvsp: ENST00000430814.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.129G>A
  hgvsp: ENST00000591682.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.496G>A
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys43Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-33690704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690704
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690704
    reference: chr 17
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.123A>G
  hgvsp: ENST00000589811.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.123A>G
  hgvsp: ENST00000441608.2:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.123A>G
  hgvsp: ENST00000591682.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.490A>G
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.123A>G
  hgvsp: ENST00000592122.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.123A>G
  hgvsp: ENST00000588579.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.123A>G
  hgvsp: ENST00000427966.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.123A>G
  hgvsp: ENST00000394566.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.123A>G
  hgvsp: ENST00000430814.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.123A>G
  hgvsp: ENST00000308377.4:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln41Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-33690707-GTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690707
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690705
    reference: chr 17
allele count: 7
allele frequency: 5.774148313123814e-5
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.118_119delGA
  hgvsp: ENSP00000464806.1:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.118_119delGA
  hgvsp: ENSP00000468095.1:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.485_486delGA
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.118_119delGA
  hgvsp: ENSP00000465777.1:p.Asp40ProfsTer?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.118_119delGA
  hgvsp: ENSP00000397454.1:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.118_119delGA
  hgvsp: ENSP00000312402.4:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.118_119delGA
  hgvsp: ENSP00000468602.1:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.118_119delGA
  hgvsp: ENSP00000395140.1:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.118_119delGA
  hgvsp: ENSP00000393615.2:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.118_119delGA
  hgvsp: ENSP00000378067.1:p.Asp40ProfsTer28
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16256
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp40ProfsTer28
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: GTC
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-33690715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690715
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690715
    reference: chr 17
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.112C>T
  hgvsp: ENSP00000397454.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.112C>T
  hgvsp: ENSP00000468095.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.112C>T
  hgvsp: ENSP00000395140.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.112C>T
  hgvsp: ENSP00000378067.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.112C>T
  hgvsp: ENSP00000312402.4:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.112C>T
  hgvsp: ENSP00000465777.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.112C>T
  hgvsp: ENSP00000464806.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.112C>T
  hgvsp: ENSP00000393615.2:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.479C>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.112C>T
  hgvsp: ENSP00000468602.1:p.Gln38Ter
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln38Ter
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-33690717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690717
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690717
    reference: chr 17
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.110T>C
  hgvsp: ENSP00000468095.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.110T>C
  hgvsp: ENSP00000378067.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.110T>C
  hgvsp: ENSP00000393615.2:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.110T>C
  hgvsp: ENSP00000465777.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.110T>C
  hgvsp: ENSP00000312402.4:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.110T>C
  hgvsp: ENSP00000468602.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.110T>C
  hgvsp: ENSP00000397454.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.477T>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.110T>C
  hgvsp: ENSP00000464806.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.110T>C
  hgvsp: ENSP00000395140.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile37Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-33690728-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690728
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690728
    reference: chr 17
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.99G>C
  hgvsp: ENSP00000395140.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.99G>C
  hgvsp: ENSP00000468095.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.99G>C
  hgvsp: ENSP00000465777.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.99G>C
  hgvsp: ENSP00000464806.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.99G>C
  hgvsp: ENSP00000378067.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.99G>C
  hgvsp: ENSP00000397454.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.99G>C
  hgvsp: ENSP00000312402.4:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.99G>C
  hgvsp: ENSP00000393615.2:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.466G>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.99G>C
  hgvsp: ENSP00000468602.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys33Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-33690729-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690729
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690729
    reference: chr 17
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.98A>C
  hgvsp: ENSP00000395140.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.98A>C
  hgvsp: ENSP00000464806.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.98A>C
  hgvsp: ENSP00000397454.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.98A>C
  hgvsp: ENSP00000468095.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.98A>C
  hgvsp: ENSP00000378067.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.98A>C
  hgvsp: ENSP00000468602.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.98A>C
  hgvsp: ENSP00000465777.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.98A>C
  hgvsp: ENSP00000393615.2:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.465A>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.98A>C
  hgvsp: ENSP00000312402.4:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys33Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS

17-33690735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690735
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690735
    reference: chr 17
allele count: 1
allele frequency: 8.278008642241022e-6
allele num: 120802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.92G>A
  hgvsp: ENSP00000378067.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.92G>A
  hgvsp: ENSP00000468095.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.92G>A
  hgvsp: ENSP00000464806.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.92G>A
  hgvsp: ENSP00000393615.2:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.92G>A
  hgvsp: ENSP00000465777.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.92G>A
  hgvsp: ENSP00000397454.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.459G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.92G>A
  hgvsp: ENSP00000312402.4:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.92G>A
  hgvsp: ENSP00000468602.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.92G>A
  hgvsp: ENSP00000395140.1:p.Arg31Lys
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg31Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-33690742-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690742
    reference: chr 17
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.85G>T
  hgvsp: ENSP00000468095.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.85G>T
  hgvsp: ENSP00000312402.4:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.85G>T
  hgvsp: ENSP00000468602.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.85G>T
  hgvsp: ENSP00000378067.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.85G>T
  hgvsp: ENSP00000397454.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.85G>T
  hgvsp: ENSP00000465777.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.85G>T
  hgvsp: ENSP00000395140.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.85G>T
  hgvsp: ENSP00000464806.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.85G>T
  hgvsp: ENSP00000393615.2:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.452G>T
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu29Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

17-33690743-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690743
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690743
    reference: chr 17
allele count: 13
allele frequency: 1.079303931987248e-4
allele num: 120448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.84A>G
  hgvsp: ENST00000427966.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.84A>G
  hgvsp: ENST00000589811.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.84A>G
  hgvsp: ENST00000588579.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.84A>G
  hgvsp: ENST00000441608.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.84A>G
  hgvsp: ENST00000591682.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.84A>G
  hgvsp: ENST00000592122.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.84A>G
  hgvsp: ENST00000394566.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.451A>G
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.84A>G
  hgvsp: ENST00000308377.4:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.84A>G
  hgvsp: ENST00000430814.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu28Glu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-33690759-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690759
    reference: chr 17
allele count: 1
allele frequency: 8.429286713758282e-6
allele num: 118634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.68A>C
  hgvsp: ENSP00000464806.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.68A>C
  hgvsp: ENSP00000395140.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.68A>C
  hgvsp: ENSP00000468602.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.68A>C
  hgvsp: ENSP00000468095.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.68A>C
  hgvsp: ENSP00000465777.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.68A>C
  hgvsp: ENSP00000378067.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.435A>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.68A>C
  hgvsp: ENSP00000397454.1:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.68A>C
  hgvsp: ENSP00000393615.2:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.68A>C
  hgvsp: ENSP00000312402.4:p.Glu23Ala
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu23Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-33690767-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690767
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690767
    reference: chr 17
allele count: 1
allele frequency: 8.490405841399219e-6
allele num: 117780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.60T>C
  hgvsp: ENST00000308377.4:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.60T>C
  hgvsp: ENST00000589811.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.60T>C
  hgvsp: ENST00000430814.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.60T>C
  hgvsp: ENST00000591682.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.60T>C
  hgvsp: ENST00000394566.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.60T>C
  hgvsp: ENST00000588579.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.427T>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.60T>C
  hgvsp: ENST00000441608.2:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.60T>C
  hgvsp: ENST00000592122.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.60T>C
  hgvsp: ENST00000427966.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn20Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-33690772-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690772
    reference: chr 17
allele count: 3
allele frequency: 2.560120154972607e-5
allele num: 117182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.55A>T
  hgvsp: ENSP00000468095.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.55A>T
  hgvsp: ENSP00000312402.4:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.55A>T
  hgvsp: ENSP00000468602.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.55A>T
  hgvsp: ENSP00000464806.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.422A>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.55A>T
  hgvsp: ENSP00000465777.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.55A>T
  hgvsp: ENSP00000378067.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.55A>T
  hgvsp: ENSP00000397454.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.55A>T
  hgvsp: ENSP00000393615.2:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.55A>T
  hgvsp: ENSP00000395140.1:p.Ile19Phe
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile19Phe
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-33690779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690779
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690779
    reference: chr 17
allele count: 1
allele frequency: 8.586491731208463e-6
allele num: 116462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.48C>T
  hgvsp: ENST00000592122.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.48C>T
  hgvsp: ENST00000427966.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.48C>T
  hgvsp: ENST00000591682.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.415C>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.48C>T
  hgvsp: ENST00000588579.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.48C>T
  hgvsp: ENST00000308377.4:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.48C>T
  hgvsp: ENST00000430814.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.48C>T
  hgvsp: ENST00000394566.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.48C>T
  hgvsp: ENST00000441608.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.48C>T
  hgvsp: ENST00000589811.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp16Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-33690784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690784
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690784
    reference: chr 17
allele count: 1
allele frequency: 8.626341396087092e-6
allele num: 115924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.43C>T
  hgvsp: ENSP00000468602.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.43C>T
  hgvsp: ENSP00000468095.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.43C>T
  hgvsp: ENSP00000464806.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.43C>T
  hgvsp: ENSP00000312402.4:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.43C>T
  hgvsp: ENSP00000393615.2:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.43C>T
  hgvsp: ENSP00000397454.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.410C>T
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.43C>T
  hgvsp: ENSP00000378067.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.43C>T
  hgvsp: ENSP00000395140.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.43C>T
  hgvsp: ENSP00000465777.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro15Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

17-33690791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690791
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690791
    reference: chr 17
allele count: 1
allele frequency: 8.658608388459807e-6
allele num: 115492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.36A>G
  hgvsp: ENST00000592122.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.36A>G
  hgvsp: ENST00000588579.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.36A>G
  hgvsp: ENST00000430814.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.36A>G
  hgvsp: ENST00000394566.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.36A>G
  hgvsp: ENST00000589811.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.36A>G
  hgvsp: ENST00000308377.4:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.36A>G
  hgvsp: ENST00000591682.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.36A>G
  hgvsp: ENST00000441608.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.36A>G
  hgvsp: ENST00000427966.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.403A>G
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4361
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro12Pro
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

17-33690794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690794
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690794
    reference: chr 17
allele count: 36
allele frequency: 3.124783001180474e-4
allele num: 115208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.400A>G
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.33A>G
  hgvsp: ENST00000441608.2:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.33A>G
  hgvsp: ENST00000591682.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.33A>G
  hgvsp: ENST00000430814.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.33A>G
  hgvsp: ENST00000427966.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.33A>G
  hgvsp: ENST00000394566.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.33A>G
  hgvsp: ENST00000589811.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.33A>G
  hgvsp: ENST00000588579.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.33A>G
  hgvsp: ENST00000592122.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.33A>G
  hgvsp: ENST00000308377.4:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 11517
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu11Glu
num of homozygotes: 2
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-33690804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690804
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690804
    reference: chr 17
allele count: 3
allele frequency: 2.630010169372655e-5
allele num: 114068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.23T>C
  hgvsp: ENSP00000395140.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.23T>C
  hgvsp: ENSP00000397454.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.23T>C
  hgvsp: ENSP00000378067.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.23T>C
  hgvsp: ENSP00000468095.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.390T>C
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.23T>C
  hgvsp: ENSP00000393615.2:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.23T>C
  hgvsp: ENSP00000465777.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.23T>C
  hgvsp: ENSP00000464806.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.23T>C
  hgvsp: ENSP00000312402.4:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.23T>C
  hgvsp: ENSP00000468602.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu8Pro
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-33690805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690805
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690805
    reference: chr 17
allele count: 2
allele frequency: 1.754970955230691e-5
allele num: 113962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.22C>T
  hgvsp: ENST00000591682.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.22C>T
  hgvsp: ENST00000394566.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.22C>T
  hgvsp: ENST00000427966.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.22C>T
  hgvsp: ENST00000308377.4:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.22C>T
  hgvsp: ENST00000430814.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.22C>T
  hgvsp: ENST00000441608.2:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.22C>T
  hgvsp: ENST00000588579.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.22C>T
  hgvsp: ENST00000592122.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.22C>T
  hgvsp: ENST00000589811.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.389C>T
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu8Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

17-33690809-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690809
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690809
    reference: chr 17
allele count: 1
allele frequency: 8.805452336086505e-6
allele num: 113566
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.18C>G
  hgvsp: ENSP00000393615.2:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.18C>G
  hgvsp: ENSP00000378067.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.18C>G
  hgvsp: ENSP00000468095.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.18C>G
  hgvsp: ENSP00000312402.4:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.18C>G
  hgvsp: ENSP00000464806.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.18C>G
  hgvsp: ENSP00000395140.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.18C>G
  hgvsp: ENSP00000468602.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.18C>G
  hgvsp: ENSP00000465777.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.18C>G
  hgvsp: ENSP00000397454.1:p.Cys6Trp
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.385C>G
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys6Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-33690809-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690809
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690809
    reference: chr 17
allele count: 1
allele frequency: 8.805452336086505e-6
allele num: 113566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.18C>A
  hgvsp: ENSP00000393615.2:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.18C>A
  hgvsp: ENSP00000395140.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.18C>A
  hgvsp: ENSP00000312402.4:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.18C>A
  hgvsp: ENSP00000464806.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.18C>A
  hgvsp: ENSP00000468602.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.385C>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.18C>A
  hgvsp: ENSP00000397454.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.18C>A
  hgvsp: ENSP00000465777.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.18C>A
  hgvsp: ENSP00000378067.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.18C>A
  hgvsp: ENSP00000468095.1:p.Cys6Ter
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys6Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-33690810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690810
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690810
    reference: chr 17
allele count: 1
allele frequency: 8.809486054583575e-6
allele num: 113514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.17G>A
  hgvsp: ENSP00000393615.2:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.17G>A
  hgvsp: ENSP00000468095.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.384G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.17G>A
  hgvsp: ENSP00000397454.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.17G>A
  hgvsp: ENSP00000465777.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.17G>A
  hgvsp: ENSP00000395140.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.17G>A
  hgvsp: ENSP00000378067.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.17G>A
  hgvsp: ENSP00000312402.4:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.17G>A
  hgvsp: ENSP00000464806.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.17G>A
  hgvsp: ENSP00000468602.1:p.Cys6Tyr
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys6Tyr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

17-33690811-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690811
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690811
    reference: chr 17
allele count: 1
allele frequency: 8.808554868488276e-6
allele num: 113526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.16T>A
  hgvsp: ENSP00000393615.2:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.16T>A
  hgvsp: ENSP00000465777.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.16T>A
  hgvsp: ENSP00000468602.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.16T>A
  hgvsp: ENSP00000468095.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.16T>A
  hgvsp: ENSP00000395140.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.383T>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.16T>A
  hgvsp: ENSP00000397454.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.16T>A
  hgvsp: ENSP00000464806.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.16T>A
  hgvsp: ENSP00000312402.4:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.16T>A
  hgvsp: ENSP00000378067.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys6Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

17-33690824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33690824
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 33690824
    reference: chr 17
allele count: 2
allele frequency: 1.778315224156634e-5
allele num: 112466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000393615
  ensembl transcript: ENST00000441608
  gene symbol: SLFN11
  hgvsc: ENST00000441608.2:c.3G>A
  hgvsp: ENSP00000393615.2:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172716
  ensembl transcript: ENST00000589562
  gene symbol: SLFN11
  hgvsc: ENST00000589562.1:n.370G>A
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468602
  ensembl transcript: ENST00000588579
  gene symbol: SLFN11
  hgvsc: ENST00000588579.1:c.3G>A
  hgvsp: ENSP00000468602.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000465777
  ensembl transcript: ENST00000592122
  gene symbol: SLFN11
  hgvsc: ENST00000592122.1:c.3G>A
  hgvsp: ENSP00000465777.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000397454
  ensembl transcript: ENST00000430814
  gene symbol: SLFN11
  hgvsc: ENST00000430814.1:c.3G>A
  hgvsp: ENSP00000397454.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000468095
  ensembl transcript: ENST00000589811
  gene symbol: SLFN11
  hgvsc: ENST00000589811.1:c.3G>A
  hgvsp: ENSP00000468095.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000312402
  ensembl transcript: ENST00000308377
  gene symbol: SLFN11
  hgvsc: ENST00000308377.4:c.3G>A
  hgvsp: ENSP00000312402.4:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000395140
  ensembl transcript: ENST00000427966
  gene symbol: SLFN11
  hgvsc: ENST00000427966.1:c.3G>A
  hgvsp: ENSP00000395140.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000464806
  ensembl transcript: ENST00000591682
  gene symbol: SLFN11
  hgvsc: ENST00000591682.1:c.3G>A
  hgvsp: ENSP00000464806.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000172716
  ensembl protein: ENSP00000378067
  ensembl transcript: ENST00000394566
  gene symbol: SLFN11
  hgvsc: ENST00000394566.1:c.3G>A
  hgvsp: ENSP00000378067.1:p.Met1?
  variant of: http://identifiers.org/hgnc/26633
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: DP

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 4.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.964e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
type: SiteQuality
SIO_000300: 3.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.805e0

DP
type: SiteQuality
SIO_000300: 3.898643e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 4900
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 2.151e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 3.899181e6

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
all individuals: 45898
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.89959e6

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 2.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.588e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 3.427e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
all individuals: 1154
bin: 6.75e1
variant carriers: 65

Latino
type: Population
allele count: 5618
allele frequency: 4.887767530885679e-1
allele num: 11494
num of homozygotes: 1394

Other
type: Population
allele count: 453
allele frequency: 5.0e-1
allele num: 906
num of homozygotes: 113

European (Finnish)
type: Population
allele count: 3432
allele frequency: 5.196850393700787e-1
allele num: 6604
num of homozygotes: 913

African
type: Population
allele count: 2276
allele frequency: 2.199033816425121e-1
allele num: 10350
num of homozygotes: 238

South Asian
type: Population
allele count: 8652
allele frequency: 5.242365487154629e-1
allele num: 16504
num of homozygotes: 2324

East Asian
type: Population
allele count: 4283
allele frequency: 4.960620801482511e-1
allele num: 8634
num of homozygotes: 1015

European (Non-Finnish)
type: Population
allele count: 35891
allele frequency: 5.383542329153417e-1
allele num: 66668
num of homozygotes: 9744

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.04e-2

QD
type: SiteQuality
SIO_000300: 2.165e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 4.060285e6

GenotypeQuality
all individuals: 3162
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.898e1

QD
type: SiteQuality
SIO_000300: 1.885e1

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 4.257e0

DP
type: SiteQuality
SIO_000300: 2.795624e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

GenotypeQuality
all individuals: 1882
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 9.09e-1

FS
type: SiteQuality
SIO_000300: 7.74e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 2.795717e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.217e1

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

DP
type: SiteQuality
SIO_000300: 2.795515e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.131e0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.795524e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

FS
type: SiteQuality
SIO_000300: 3.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 2.795555e6

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.009e0

FS
type: SiteQuality
SIO_000300: 2.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.009e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.795555e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 1.453e1

FS
type: SiteQuality
SIO_000300: 2.97e0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.74e-1

MQ
type: SiteQuality
SIO_000300: 6.072e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.501e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

QD
type: SiteQuality
SIO_000300: 1.487e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 2.795519e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

DP
type: SiteQuality
SIO_000300: 2.796082e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e0

FS
type: SiteQuality
SIO_000300: 1.905e0

MQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

QD
type: SiteQuality
SIO_000300: 1.605e1

VQSLOD
type: SiteQuality
SIO_000300: -2.297e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.796409e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

FS
type: SiteQuality
SIO_000300: 1.7481e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.415e0

MQRankSum
type: SiteQuality
SIO_000300: -1.048e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.363e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

QD
type: SiteQuality
SIO_000300: 1.935e1

DP
type: SiteQuality
SIO_000300: 2.796949e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
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allele num: 11516
num of homozygotes: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.576e1

FS
type: SiteQuality
SIO_000300: 2.779e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.64e-1

DP
type: SiteQuality
SIO_000300: 2.797126e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.797257e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
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allele num: 11522
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 0

African
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allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 908
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VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Other
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num of homozygotes: 0

Latino
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allele frequency: 1.734304543877905e-4
allele num: 11532
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African
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QD
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.797782e6

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.677e0

QD
type: SiteQuality
SIO_000300: 1.413e1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 27783
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.797731e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.463e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27783
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 6
allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 2.797906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 2.873e0

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeQuality
all individuals: 3785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12707
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
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variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.563e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 3.976e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.797535e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

QD
type: SiteQuality
SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 2.795819e6

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3762
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variant carriers: 0

GenotypeQuality
all individuals: 1882
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12383
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variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.086e0

FS
type: SiteQuality
SIO_000300: 6.02e-1

DP
type: SiteQuality
SIO_000300: 2.793088e6

GenotypeQuality
all individuals: 12174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 5114
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 1877
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variant carriers: 0

GenotypeQuality
all individuals: 27764
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 2.789595e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 4.659e0

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27762
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.787811e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

FS
type: SiteQuality
SIO_000300: 3.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 5022
bin: 6.75e1
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
all individuals: 2262
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GenotypeQuality
all individuals: 12102
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variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 1876
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variant carriers: 0

GenotypeQuality
all individuals: 27761
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.248e1

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.786683e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.896e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 27769
bin: 9.75e1
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GenotypeQuality
all individuals: 12174
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variant carriers: 0

GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.445e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 2.78995e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27769
bin: 9.75e1
variant carriers: 42

Latino
type: Population
allele count: 2
allele frequency: 1.730403183941858e-4
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.363444166826831e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.998620317327015e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.445e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

DP
type: SiteQuality
SIO_000300: 2.78995e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 30042
bin: 9.75e1
variant carriers: 14499

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11642
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3348
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1115
allele frequency: 1.071497213146262e-1
allele num: 10406
num of homozygotes: 59

Latino
type: Population
allele count: 908
allele frequency: 7.8601108033241e-2
allele num: 11552
num of homozygotes: 40

South Asian
type: Population
allele count: 1148
allele frequency: 6.969402622632345e-2
allele num: 16472
num of homozygotes: 48

European (Finnish)
type: Population
allele count: 845
allele frequency: 1.277979431336963e-1
allele num: 6612
num of homozygotes: 73

Other
type: Population
allele count: 144
allele frequency: 1.585903083700441e-1
allele num: 908
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 11731
allele frequency: 1.759350910345241e-1
allele num: 66678
num of homozygotes: 1103

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.98e-2

QD
type: SiteQuality
SIO_000300: 1.442e1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
type: SiteQuality
SIO_000300: 4.31221e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.818e0

GenotypeQuality
all individuals: 4610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.394266e6

QD
type: SiteQuality
SIO_000300: 1.367e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e0

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

FS
type: SiteQuality
SIO_000300: 6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.237e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 6.366e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 2.394181e6

GenotypeQuality
all individuals: 4399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20568
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.646973012399708e-4
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 2.394167e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.201e0

FS
type: SiteQuality
SIO_000300: 3.297e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20562
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 2.394355e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 1.181e1

VQSLOD
type: SiteQuality
SIO_000300: -1.333e0

FS
type: SiteQuality
SIO_000300: 4.894e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4575
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.912e0

DP
type: SiteQuality
SIO_000300: 2.394005e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.171e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.238e0

VQSLOD
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499775011249437e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.941e-1

DP
type: SiteQuality
SIO_000300: 2.395181e6

QD
type: SiteQuality
SIO_000300: 1.112e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.71e-1

FS
type: SiteQuality
SIO_000300: 3.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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ClippingRankSum
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DP
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FS
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MQ
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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European (Non-Finnish)
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Latino
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East Asian
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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European (Finnish)
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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FS
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QD
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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European (Finnish)
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European (Non-Finnish)
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Latino
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allele frequency: 8.655011251514626e-5
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Other
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South Asian
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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East Asian
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allele num: 8654
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South Asian
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Latino
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.665511265164645e-5
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQRankSum
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FS
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16498
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Latino
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Other
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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QD
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ReadPosRankSum
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SIO_000300: -8.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.335e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: -2.121e-1

DP
type: SiteQuality
SIO_000300: 2.392793e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.557e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.583e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.390925e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.75e1

FS
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.387658e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.713e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

FS
type: SiteQuality
SIO_000300: 1.909e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.692e0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.838e-1

DP
type: SiteQuality
SIO_000300: 2.38182e6

QD
type: SiteQuality
SIO_000300: 1.711e1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.27301214257736e-3
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16034
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

DP
type: SiteQuality
SIO_000300: 2.381446e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513271390091099e-5
allele num: 66082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.832000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 2.345246e6

FS
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14230
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

Other
type: Population
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allele num: 868
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

MQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.183e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.004807692307692e-4
allele num: 9984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13830
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.332e1

DP
type: SiteQuality
SIO_000300: 2.321506e6

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.524390243902439e-5
allele num: 65600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13342
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

VQSLOD
type: SiteQuality
SIO_000300: -4.129e-1

DP
type: SiteQuality
SIO_000300: 2.312765e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.167e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.308085e6

ReadPosRankSum
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SIO_000300: 1.44e0

VQSLOD
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SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.098e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.408e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530502923260583e-5
allele num: 65338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.166e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.258e0

QD
type: SiteQuality
SIO_000300: 9.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.344e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.303219e6

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20519
bin: 9.75e1
variant carriers: 33

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.018978396931153e-4
allele num: 9906
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.617801047120419e-4
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.17096018735363e-3
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.225865767698437e-4
allele num: 65260
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 1.758031005274093e-3
allele num: 12514
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

DP
type: SiteQuality
SIO_000300: 2.300925e6

FS
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.49762066621346e-5
allele num: 11768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.078722945722114e-5
allele num: 64962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 2.291779e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
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SIO_000300: -1.352e0

VQSLOD
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SIO_000300: 2.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.71174255391989e-4
allele num: 11684
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
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DP
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.286956e6

FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017293997965412e-4
allele num: 9830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11254
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20484
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64826
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.771929824561403e-5
allele num: 11400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.395e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.512e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.495e0

QD
type: SiteQuality
SIO_000300: 7.97e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.286808e6

GenotypeQuality
all individuals: 909
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20482
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64828
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.111e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.584e0

DP
type: SiteQuality
SIO_000300: 2.286488e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20472
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.098661378284581e-5
allele num: 64544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.276327e6