16-5135628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135628
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135628
    reference: chr 16
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.*5C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*506C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*415C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.*5C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.428C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.557G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*814C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-5135640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135640
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135640
    reference: chr 16
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.803C>T
  hgvsp: ENSP00000468599.1:p.Thr268Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*494C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.884C>T
  hgvsp: ENSP00000389710.3:p.Thr295Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*403C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*802C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.986C>T
  hgvsp: ENSP00000398502.3:p.Thr329Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.569G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.416C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr329Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

16-5135644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135644
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135644
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*490C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.982C>A
  hgvsp: ENSP00000398502.3:p.Leu328Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.573G>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.799C>A
  hgvsp: ENSP00000468599.1:p.Leu267Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.880C>A
  hgvsp: ENSP00000389710.3:p.Leu294Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*399C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*798C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.412C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu328Ile
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

16-5135645-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135645
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135646
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.878dupA
  hgvsp: ENSP00000389710.3:p.Asn293LysfsTer61
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*488dupA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.980dupA
  hgvsp: ENSP00000398502.3:p.Asn327LysfsTer61
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*397dupA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.410dupA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.797dupA
  hgvsp: ENSP00000468599.1:p.Asn266LysfsTer?
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*796dupA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.576dupT
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn327LysfsTer61
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

16-5135646-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135646
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.575T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*488A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*397A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.410A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.797A>G
  hgvsp: ENSP00000468599.1:p.Asn266Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.980A>G
  hgvsp: ENSP00000398502.3:p.Asn327Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*796A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.878A>G
  hgvsp: ENSP00000389710.3:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn327Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-5135646-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135646
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.575T>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*397A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*488A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.980A>C
  hgvsp: ENSP00000398502.3:p.Asn327Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.878A>C
  hgvsp: ENSP00000389710.3:p.Asn293Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.410A>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.797A>C
  hgvsp: ENSP00000468599.1:p.Asn266Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*796A>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn327Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

16-5135656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135656
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135656
    reference: chr 16
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.585C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*387G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.868G>A
  hgvsp: ENSP00000389710.3:p.Ala290Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.400G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.787G>A
  hgvsp: ENSP00000468599.1:p.Ala263Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.970G>A
  hgvsp: ENSP00000398502.3:p.Ala324Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*478G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*786G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala324Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

16-5135657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135657
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135657
    reference: chr 16
allele count: 85
allele frequency: 7.001070751997365e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*386G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*477G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.586C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.867G>A
  hgvsp: ENSP00000389710.3:p.Met289Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.786G>A
  hgvsp: ENSP00000468599.1:p.Met262Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*785G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.969G>A
  hgvsp: ENSP00000398502.3:p.Met323Ile
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.399G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 9.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48794
  bin: 9.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met323Ile
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

16-5135658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135658
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135658
    reference: chr 16
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.785T>C
  hgvsp: ENSP00000468599.1:p.Met262Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.968T>C
  hgvsp: ENSP00000398502.3:p.Met323Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.398T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*476T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.587A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.866T>C
  hgvsp: ENSP00000389710.3:p.Met289Thr
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*385T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*784T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met323Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-5135659-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135659
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135659
    reference: chr 16
allele count: 12
allele frequency: 9.883864591055103e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.784A>G
  hgvsp: ENSP00000468599.1:p.Met262Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*384A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*475A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.865A>G
  hgvsp: ENSP00000389710.3:p.Met289Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.588T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.967A>G
  hgvsp: ENSP00000398502.3:p.Met323Val
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.397A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*783A>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met323Val
num of homozygotes: 1
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

16-5135660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135660
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135660
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*474G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.864G>A
  hgvsp: ENST00000458008.4:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*782G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.589C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*383G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.966G>A
  hgvsp: ENST00000427587.4:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.783G>A
  hgvsp: ENST00000587133.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.396G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu322Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

16-5135663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135663
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135663
    reference: chr 16
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*380G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*779G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.963G>A
  hgvsp: ENST00000427587.4:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.861G>A
  hgvsp: ENST00000458008.4:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.592C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*471G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.393G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.780G>A
  hgvsp: ENST00000587133.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: n.592C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-5135665-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135665
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135665
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.961T>C
  hgvsp: ENST00000427587.4:c.961T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.391T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.859T>C
  hgvsp: ENST00000458008.4:c.859T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*777T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*378T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*469T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.778T>C
  hgvsp: ENST00000587133.1:c.778T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48773
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: n.594A>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

16-5135669-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135669
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135669
    reference: chr 16
allele count: 76
allele frequency: 6.259780907668231e-4
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.774G>C
  hgvsp: ENSP00000468599.1:p.Glu258Asp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*374G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*773G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*465G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+4C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.855G>C
  hgvsp: ENSP00000389710.3:p.Glu285Asp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.957G>C
  hgvsp: ENSP00000398502.3:p.Glu319Asp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.387G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 9.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu319Asp
num of homozygotes: 1
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-5135675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135675
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135675
    reference: chr 16
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+10G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.951C>T
  hgvsp: ENST00000427587.4:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.381C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.768C>T
  hgvsp: ENST00000587133.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*459C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*767C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.849C>T
  hgvsp: ENST00000458008.4:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*368C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr317Tyr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

16-5135686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135686
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135686
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*448C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+21G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.757C>T
  hgvsp: ENST00000587133.1:c.757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*756C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.370C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.940C>T
  hgvsp: ENST00000427587.4:c.940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*357C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.838C>T
  hgvsp: ENST00000458008.4:c.838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu314Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-5135700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135700
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135700
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*434G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.356G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*742G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+35C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*343G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.926G>A
  hgvsp: ENSP00000398502.3:p.Arg309His
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.824G>A
  hgvsp: ENSP00000389710.3:p.Arg275His
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.743G>A
  hgvsp: ENSP00000468599.1:p.Arg248His
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg309His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

16-5135701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135701
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135701
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.355C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*433C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.823C>T
  hgvsp: ENSP00000389710.3:p.Arg275Cys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+36G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.742C>T
  hgvsp: ENSP00000468599.1:p.Arg248Cys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.925C>T
  hgvsp: ENSP00000398502.3:p.Arg309Cys
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*342C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*741C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg309Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-5135704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135704
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135704
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.352C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*430C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.820C>T
  hgvsp: ENSP00000389710.3:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*339C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.739C>T
  hgvsp: ENSP00000468599.1:p.Pro247Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+39G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.922C>T
  hgvsp: ENSP00000398502.3:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*738C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro308Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

16-5135704-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135704
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135703
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*429delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*737delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.921delA
  hgvsp: ENSP00000398502.3:p.Glu307AspfsTer20
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.738delA
  hgvsp: ENSP00000468599.1:p.Glu246AspfsTer20
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+41delT
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.819delA
  hgvsp: ENSP00000389710.3:p.Glu273AspfsTer20
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*338delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.351delA
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu307AspfsTer20
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: GT
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

16-5135710-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135710
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135709
    reference: chr 16
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*332delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.345delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*731delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.813delA
  hgvsp: ENSP00000389710.3:p.Val272TrpfsTer21
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.732delA
  hgvsp: ENSP00000468599.1:p.Val245TrpfsTer21
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*423delA
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+47delT
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.915delA
  hgvsp: ENSP00000398502.3:p.Val306TrpfsTer21
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val306TrpfsTer21
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CT
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-5135712-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135712
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135711
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.730delG
  hgvsp: ENSP00000468599.1:p.Glu244LysfsTer22
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*421delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.913delG
  hgvsp: ENSP00000398502.3:p.Glu305LysfsTer22
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*330delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*729delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+50delC
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.343delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.811delG
  hgvsp: ENSP00000389710.3:p.Glu271LysfsTer22
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu305LysfsTer22
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: TC
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

16-5135723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135723
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135723
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.801G>A
  hgvsp: ENST00000458008.4:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*411G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.720G>A
  hgvsp: ENST00000587133.1:c.720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*320G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+58C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.333G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.903G>A
  hgvsp: ENST00000427587.4:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*719G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly301Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

16-5135725-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135725
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135725
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+60C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.331G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*717G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.718G>C
  hgvsp: ENSP00000468599.1:p.Gly240Arg
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.901G>C
  hgvsp: ENSP00000398502.3:p.Gly301Arg
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*409G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.799G>C
  hgvsp: ENSP00000389710.3:p.Gly267Arg
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*318G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly301Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

16-5135725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135725
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135725
    reference: chr 16
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+60C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*717G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*409G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.718G>A
  hgvsp: ENSP00000468599.1:p.Gly240Arg
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.901G>A
  hgvsp: ENSP00000398502.3:p.Gly301Arg
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*318G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.331G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.799G>A
  hgvsp: ENSP00000389710.3:p.Gly267Arg
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly301Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

16-5135726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135726
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135726
    reference: chr 16
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.798C>T
  hgvsp: ENST00000458008.4:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.330C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+61G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.717C>T
  hgvsp: ENST00000587133.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.900C>T
  hgvsp: ENST00000427587.4:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*408C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*317C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*716C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48753
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala300Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-5135726-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135726
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135726
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.798C>G
  hgvsp: ENST00000458008.4:c.798C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*317C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*716C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.330C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+61G>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.717C>G
  hgvsp: ENST00000587133.1:c.717C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*408C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.900C>G
  hgvsp: ENST00000427587.4:c.900C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala300Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

16-5135730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135730
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135730
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*404G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.713G>A
  hgvsp: ENSP00000468599.1:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.326G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*313G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.794G>A
  hgvsp: ENSP00000389710.3:p.Arg265Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.896G>A
  hgvsp: ENSP00000398502.3:p.Arg299Gln
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+65C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*712G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48753
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg299Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-5135731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135731
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.325C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*403C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.793C>T
  hgvsp: ENSP00000389710.3:p.Arg265Trp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*711C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.712C>T
  hgvsp: ENSP00000468599.1:p.Arg238Trp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.895C>T
  hgvsp: ENSP00000398502.3:p.Arg299Trp
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+66G>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg299Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-5135741-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135741
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135742
    reference: chr 16
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-9dupT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-9dupT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-9dupT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+77dupA
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-9dupT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-9dupT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-9dupT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-9dupT
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

16-5135741-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135741
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135739
    reference: chr 16
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-10_791-9delCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-10_710-9delCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-10_893-9delCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+79_594+80delAG
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-10_*709-9delCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-10_*310-9delCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-10_323-9delCT
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-10_*401-9delCT
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CAG
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

16-5135745-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135745
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135744
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-13delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-13delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-13delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+81delC
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-13delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-13delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-13delG
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-13delG
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: GC
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-5135747-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135747
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135747
    reference: chr 16
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+82A>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-14T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-14T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-14T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-14T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-14T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-14T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-14T>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

16-5135749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135749
    reference: chr 16
allele count: 17
allele frequency: 1.400444847186754e-4
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+84A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-16T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-16T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48755
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

16-5135749-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135749
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-16T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-16T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-16T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+84A>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-16T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-16T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-16T>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-16T>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-5135750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135750
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+85T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-17A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-17A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-17A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-17A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-17A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-17A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-17A>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

16-5135753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135753
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135753
    reference: chr 16
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+88G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-20C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-5135760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135760
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135760
    reference: chr 16
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-27C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-27C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-27C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-27C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+95G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-27C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-27C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-27C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48751
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

16-5135762-TGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135759
    reference: chr 16
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-32_*709-30delGCC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+100_594+102delCGG
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-32_*310-30delGCC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-32_710-30delGCC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-32_791-30delGCC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-32_*401-30delGCC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-32_893-30delGCC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-32_323-30delGCC
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: TGGC
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

16-5135764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135764
    reference: chr 16
allele count: 5
allele frequency: 4.119294776734223e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+99G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-31C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-31C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

16-5135765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135765
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135765
    reference: chr 16
allele count: 8
allele frequency: 6.591414682376204e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+100C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-32G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-32G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

16-5135766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135766
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135766
    reference: chr 16
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-33C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-33C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+101G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-33C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-33C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-33C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-33C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-33C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48741
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

16-5135767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135767
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135767
    reference: chr 16
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+102G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-34C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-34C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-34C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-34C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-34C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-34C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-34C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-5135767-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135767
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135767
    reference: chr 16
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-34C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-34C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-34C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-34C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+102G>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-34C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-34C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-34C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-5135769-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135769
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135769
    reference: chr 16
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-36C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+104G>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-36C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-36C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-36C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-36C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-36C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-36C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-5135771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135771
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135771
    reference: chr 16
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-38A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+106T>C
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

16-5135778-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135778
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135778
    reference: chr 16
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-45G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-45G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-45G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-45G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-45G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+113C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-45G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-45G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

16-5135778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135778
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135778
    reference: chr 16
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-45G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+113C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-45G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48732
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-5135780-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135780
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135780
    reference: chr 16
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-47C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-47C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-47C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-47C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+115G>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-47C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-47C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-47C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

16-5135783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135783
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135783
    reference: chr 16
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-50G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+118C>T
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48725
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

16-5135784-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5135784
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5135784
    reference: chr 16
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.710-51T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.323-51T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl transcript: ENST00000592661
  gene symbol: ALG1
  hgvsc: ENST00000592661.1:n.594+119A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.893-51T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*310-51T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.791-51T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*401-51T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*709-51T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS

16-5139057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139057
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139057
    reference: chr 16
allele count: 8
allele frequency: 6.846618626225973e-5
allele num: 116846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+51A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+51A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+51A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+51A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+51A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+51A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+51A>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-5139059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139059
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139059
    reference: chr 16
allele count: 1
allele frequency: 8.558712769599453e-6
allele num: 116840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+49G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+49G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+49G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+49G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+49G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+49G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+49G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

16-5139065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139065
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139065
    reference: chr 16
allele count: 2
allele frequency: 1.711625359441325e-5
allele num: 116848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+43G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+43G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+43G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+43G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+43G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+43G>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+43G>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33346
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS

16-5139066-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139066
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139066
    reference: chr 16
allele count: 1
allele frequency: 8.557833841098141e-6
allele num: 116852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+42T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+42T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

16-5139067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139067
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139067
    reference: chr 16
allele count: 6
allele frequency: 5.134612422338987e-5
allele num: 116854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+41C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+41C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+41C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+41C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+41C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+41C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+41C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-5139068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139068
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139068
    reference: chr 16
allele count: 1
allele frequency: 8.558859275235797e-6
allele num: 116838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+40G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+40G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+40G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+40G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+40G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+40G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+40G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-5139071-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139071
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139071
    reference: chr 16
allele count: 2
allele frequency: 1.711713253795724e-5
allele num: 116842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+37T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+37T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+37T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+37T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+37T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+37T>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+37T>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33348
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

16-5139071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139071
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139071
    reference: chr 16
allele count: 28
allele frequency: 2.396398555314014e-4
allele num: 116842
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+37T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+37T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+37T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+37T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+37T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+37T>C
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+37T>C
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33348
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54207
  bin: 9.75e1
  variant carriers: 27
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

16-5139074-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139074
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139074
    reference: chr 16
allele count: 21
allele frequency: 1.797175866495507e-4
allele num: 116850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+34C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+34C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+34C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+34C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+34C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+34C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+34C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33346
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54210
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-5139079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139079
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139079
    reference: chr 16
allele count: 4
allele frequency: 3.42301636201821e-5
allele num: 116856
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+29A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+29A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+29A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+29A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+29A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+29A>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+29A>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

16-5139080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139080
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139080
    reference: chr 16
allele count: 1
allele frequency: 8.558273282782466e-6
allele num: 116846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+28C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+28C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+28C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+28C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+28C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+28C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+28C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

16-5139081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139081
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139081
    reference: chr 16
allele count: 27
allele frequency: 2.311050243944192e-4
allele num: 116830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+27G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+27G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+27G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+27G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+27G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+27G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+27G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33348
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-5139086-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139086
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139086
    reference: chr 16
allele count: 1
allele frequency: 8.556955093099671e-6
allele num: 116864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+22G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+22G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+22G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+22G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+22G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+22G>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+22G>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-5139087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139087
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139087
    reference: chr 16
allele count: 1
allele frequency: 8.559591878659225e-6
allele num: 116828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+21G>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+21G>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-5139087-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139087
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139086
    reference: chr 16
allele count: 4
allele frequency: 3.42383675146369e-5
allele num: 116828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+20delC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+20delC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+20delC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+20delC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+20delC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+20delC
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+20delC
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54209
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: CG
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-5139088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139088
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139088
    reference: chr 16
allele count: 4
allele frequency: 3.423133536439257e-5
allele num: 116852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+20C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+20C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

16-5139088-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139088
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139088
    reference: chr 16
allele count: 2
allele frequency: 1.711566768219628e-5
allele num: 116852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+20C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+20C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+20C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+20C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+20C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+20C>G
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+20C>G
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54205
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

16-5139088-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139088
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139088
    reference: chr 16
allele count: 1
allele frequency: 8.557833841098141e-6
allele num: 116852
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+20C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+20C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+20C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+20C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+20C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+20C>A
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+20C>A
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33345
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

16-5139092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139092
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139092
    reference: chr 16
allele count: 5
allele frequency: 4.276794115131298e-5
allele num: 116910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+16C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+16C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+16C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+16C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+16C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+16C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+16C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33344
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

16-5139093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5139093
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5139093
    reference: chr 16
allele count: 1
allele frequency: 8.553588230262596e-6
allele num: 116910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl transcript: ENST00000587608
  gene symbol: FAM86A
  hgvsc: ENST00000587608.1:n.322+15C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000389710
  ensembl transcript: ENST00000458008
  gene symbol: FAM86A
  hgvsc: ENST00000458008.4:c.790+15C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464781
  ensembl transcript: ENST00000585436
  gene symbol: FAM86A
  hgvsc: ENST00000585436.1:c.*400+15C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000464773
  ensembl transcript: ENST00000587161
  gene symbol: FAM86A
  hgvsc: ENST00000587161.1:c.*708+15C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000398502
  ensembl transcript: ENST00000427587
  gene symbol: FAM86A
  hgvsc: ENST00000427587.4:c.892+15C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000467790
  ensembl transcript: ENST00000587200
  gene symbol: FAM86A
  hgvsc: ENST00000587200.1:c.*309+15C>T
  variant of: http://identifiers.org/hgnc/32221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118894
  ensembl protein: ENSP00000468599
  ensembl transcript: ENST00000587133
  gene symbol: FAM86A
  hgvsc: ENST00000587133.1:c.709+15C>T
  variant of: http://identifiers.org/hgnc/32221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33343
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54209
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48789
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e0

QD
type: SiteQuality
SIO_000300: 1.23e1

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 3.591467e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.384e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
all individuals: 1977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48789
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.591878e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 9.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 1.254e0

QD
type: SiteQuality
SIO_000300: 1.275e1

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
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SIO_000300: -3.538e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.786e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.961e0

FS
type: SiteQuality
SIO_000300: 5.646e0

MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.683e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e0

DP
type: SiteQuality
SIO_000300: 3.591636e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.11e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.882e1

DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
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East Asian
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele frequency: 8.897619597873815e-3
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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South Asian
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allele frequency: 2.422480620155039e-4
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African
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allele num: 10406
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Other
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
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South Asian
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African
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allele num: 10406
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East Asian
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
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DP
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Other
type: Population
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Latino
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European (Non-Finnish)
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allele num: 66738
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8654
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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DP
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FS
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VQSLOD
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 66738
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African
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South Asian
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East Asian
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European (Finnish)
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Latino
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QD
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MQ
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 7.015183547953104e-3
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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QD
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FS
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQ
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FS
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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East Asian
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QD
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Latino
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European (Finnish)
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Other
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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QD
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MQ
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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VQSLOD
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DP
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.76e0

VQSLOD
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SIO_000300: 9.11e-1

InbreedingCoeff
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SIO_000300: 1.8e-3

MQ
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SIO_000300: 5.8e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
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allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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FS
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

South Asian
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
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Other
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Latino
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num of homozygotes: 0

VQSLOD
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FS
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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South Asian
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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QD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Latino
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European (Non-Finnish)
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Other
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African
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South Asian
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European (Finnish)
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VQSLOD
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66734
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Latino
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European (Finnish)
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East Asian
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Other
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VQSLOD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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FS
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.22e0

ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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DP
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 1.08e0

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.759e1

VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele num: 16512
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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South Asian
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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Other
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European (Non-Finnish)
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66726
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.923816852635629e-4
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e-1

DP
type: SiteQuality
SIO_000300: 3.588582e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.889e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

GenotypeQuality
all individuals: 812
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 1614
bin: 7.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.271e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 3.587843e6

MQ
type: SiteQuality
SIO_000300: 5.762e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 810
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GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.779010633379565e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 2.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 3.587726e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2505
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1296
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variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49667246237784e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.711e0

DP
type: SiteQuality
SIO_000300: 3.587792e6

QD
type: SiteQuality
SIO_000300: 1.186e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.481e0

MQ
type: SiteQuality
SIO_000300: 5.737e1

QD
type: SiteQuality
SIO_000300: 1.528e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

DP
type: SiteQuality
SIO_000300: 3.587013e6

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 1618
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 1985
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 48741
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.821e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

DP
type: SiteQuality
SIO_000300: 3.586823e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.091e0

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.644e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.344e0

FS
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.791e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 109
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 4.527e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 4.5e-2

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.165e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.798e1

InbreedingCoeff
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SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 3.581931e6

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.886e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.083188908145581e-4
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East Asian
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allele frequency: 2.371354043158644e-4
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.272541947624274e-5
allele num: 63770
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South Asian
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VQSLOD
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DP
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MQ
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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European (Finnish)
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.642987249544627e-4
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East Asian
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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DP
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ReadPosRankSum
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SIO_000300: 4.99e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.082954299328568e-4
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6588
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 63762
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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SIO_000300: 5.993226e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 1.568037131119265e-5
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Other
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East Asian
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South Asian
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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DP
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SIO_000300: 5.994114e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 886
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11466
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European (Non-Finnish)
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allele frequency: 2.038448270455044e-4
allele num: 63774
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African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 7.285974499089253e-4
allele num: 16470
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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DP
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SIO_000300: 5.994114e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 10
allele frequency: 1.567692983006208e-4
allele num: 63788
num of homozygotes: 0

East Asian
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Other
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
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Latino
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allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
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South Asian
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allele frequency: 6.678809957498482e-4
allele num: 16470
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-3

DP
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MQ
type: SiteQuality
SIO_000300: 5.413e1

FS
type: SiteQuality
SIO_000300: 1.684e0

MQRankSum
type: SiteQuality
SIO_000300: -5.314e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9224
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European (Non-Finnish)
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allele frequency: 1.567643831321524e-5
allele num: 63790
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Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 1.821493624772313e-4
allele num: 16470
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Other
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 888
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Latino
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VQSLOD
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MQRankSum
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QD
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.272541947624274e-5
allele num: 63770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.93e0

MQRankSum
type: SiteQuality
SIO_000300: -4.692e0

DP
type: SiteQuality
SIO_000300: 5.995514e6

MQ
type: SiteQuality
SIO_000300: 5.567e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

FS
type: SiteQuality
SIO_000300: 2.279e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54205
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.084598698481562e-4
allele num: 9220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.135484275546358e-5
allele num: 63786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

MQ
type: SiteQuality
SIO_000300: 5.778e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

DP
type: SiteQuality
SIO_000300: 5.99611e6

GenotypeQuality
all individuals: 558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.084598698481562e-4
allele num: 9220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567742137773179e-5
allele num: 63786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.99611e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

MQ
type: SiteQuality
SIO_000300: 5.778e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

GenotypeQuality
all individuals: 54205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567742137773179e-5
allele num: 63786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQ
type: SiteQuality
SIO_000300: 5.778e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

DP
type: SiteQuality
SIO_000300: 5.99611e6

GenotypeQuality
all individuals: 1263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54209
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.925574780753733e-4
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.854e1

VQSLOD
type: SiteQuality
SIO_000300: -6.979e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

QD
type: SiteQuality
SIO_000300: 1.051e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.697e0

DP
type: SiteQuality
SIO_000300: 5.997177e6

GenotypeQuality
all individuals: 565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0