http://identifiers.org/exac.variant/16-5112455-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112455
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112455
    reference: chr 16
allele count: 1
allele frequency: 8.349057391420508e-6
allele num: 119774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.329T>G
  hgvsp: ENSP00000420566.2:p.Leu110Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.329T>G
  hgvsp: ENSP00000417158.3:p.Leu110Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.329T>G
  hgvsp: ENSP00000324672.5:p.Leu110Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.443T>G
  hgvsp: ENSP00000283478.4:p.Leu148Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.340T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10497A>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.443T>G
  hgvsp: ENSP00000390402.1:p.Leu148Arg
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu110Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-5112459-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112459
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112459
    reference: chr 16
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10493A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.325T>C
  hgvsp: ENSP00000324672.5:p.Tyr109His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.325T>C
  hgvsp: ENSP00000417158.3:p.Tyr109His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.439T>C
  hgvsp: ENSP00000283478.4:p.Tyr147His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.439T>C
  hgvsp: ENSP00000390402.1:p.Tyr147His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.336T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.325T>C
  hgvsp: ENSP00000420566.2:p.Tyr109His
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr109His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-5112460-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112460
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112460
    reference: chr 16
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.324C>G
  hgvsp: ENSP00000417158.3:p.His108Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.335C>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.324C>G
  hgvsp: ENSP00000420566.2:p.His108Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10492G>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.324C>G
  hgvsp: ENSP00000324672.5:p.His108Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.438C>G
  hgvsp: ENSP00000283478.4:p.His146Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.438C>G
  hgvsp: ENSP00000390402.1:p.His146Gln
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4988
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His108Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

16-5112463-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112463
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112463
    reference: chr 16
allele count: 1
allele frequency: 8.334583520861462e-6
allele num: 119982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10489G>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.332C>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.321C>G
  hgvsp: ENST00000315997.5:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.435C>G
  hgvsp: ENST00000350219.4:c.435C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.321C>G
  hgvsp: ENST00000472572.3:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.321C>G
  hgvsp: ENST00000474471.3:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.435C>G
  hgvsp: ENST00000422873.1:c.435C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9757
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu107Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/16-5112464-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112464
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112464
    reference: chr 16
allele count: 1
allele frequency: 8.332638946754437e-6
allele num: 120010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10488A>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.320T>G
  hgvsp: ENSP00000417158.3:p.Leu107Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.434T>G
  hgvsp: ENSP00000390402.1:p.Leu145Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.331T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.320T>G
  hgvsp: ENSP00000420566.2:p.Leu107Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.434T>G
  hgvsp: ENSP00000283478.4:p.Leu145Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.320T>G
  hgvsp: ENSP00000324672.5:p.Leu107Arg
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu107Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

16-5112472-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112472
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112472
    reference: chr 16
allele count: 2
allele frequency: 1.665112561609165e-5
allele num: 120112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.323G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10480C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.426G>C
  hgvsp: ENSP00000283478.4:p.Gln142His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.312G>C
  hgvsp: ENSP00000417158.3:p.Gln104His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.312G>C
  hgvsp: ENSP00000324672.5:p.Gln104His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.312G>C
  hgvsp: ENSP00000420566.2:p.Gln104His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.426G>C
  hgvsp: ENSP00000390402.1:p.Gln142His
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9769
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln104His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

16-5112473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112473
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112473
    reference: chr 16
allele count: 1
allele frequency: 8.32514693884347e-6
allele num: 120118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.425A>G
  hgvsp: ENSP00000390402.1:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.311A>G
  hgvsp: ENSP00000324672.5:p.Gln104Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.311A>G
  hgvsp: ENSP00000417158.3:p.Gln104Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.322A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.311A>G
  hgvsp: ENSP00000420566.2:p.Gln104Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.425A>G
  hgvsp: ENSP00000283478.4:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10479T>C
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6554
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln104Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-5112474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112474
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112474
    reference: chr 16
allele count: 1
allele frequency: 8.324315325064513e-6
allele num: 120130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.424C>T
  hgvsp: ENSP00000390402.1:p.Gln142Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.310C>T
  hgvsp: ENSP00000324672.5:p.Gln104Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.310C>T
  hgvsp: ENSP00000417158.3:p.Gln104Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.321C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.310C>T
  hgvsp: ENSP00000420566.2:p.Gln104Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10478G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.424C>T
  hgvsp: ENSP00000283478.4:p.Gln142Ter
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4992
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln104Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

16-5112480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112480
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112480
    reference: chr 16
allele count: 40
allele frequency: 3.329338127580237e-4
allele num: 120144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.304G>A
  hgvsp: ENSP00000417158.3:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.418G>A
  hgvsp: ENSP00000390402.1:p.Ala140Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10472C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.418G>A
  hgvsp: ENSP00000283478.4:p.Ala140Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.304G>A
  hgvsp: ENSP00000420566.2:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.315G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.304G>A
  hgvsp: ENSP00000324672.5:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10034
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13828
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8040
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala102Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

16-5112483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112483
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112483
    reference: chr 16
allele count: 1
allele frequency: 8.321682977165302e-6
allele num: 120168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.301G>A
  hgvsp: ENSP00000420566.2:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.415G>A
  hgvsp: ENSP00000283478.4:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.301G>A
  hgvsp: ENSP00000417158.3:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.415G>A
  hgvsp: ENSP00000390402.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.301G>A
  hgvsp: ENSP00000324672.5:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.312G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10469C>T
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9782
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala101Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

16-5112486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112486
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112486
    reference: chr 16
allele count: 2
allele frequency: 1.664253499092982e-5
allele num: 120174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.309G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.412G>A
  hgvsp: ENSP00000283478.4:p.Glu138Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.298G>A
  hgvsp: ENSP00000417158.3:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.412G>A
  hgvsp: ENSP00000390402.1:p.Glu138Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.298G>A
  hgvsp: ENSP00000324672.5:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10466C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.298G>A
  hgvsp: ENSP00000420566.2:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10034
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu100Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

16-5112493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112493
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112493
    reference: chr 16
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.291G>A
  hgvsp: ENST00000474471.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.405G>A
  hgvsp: ENST00000350219.4:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.405G>A
  hgvsp: ENST00000422873.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.291G>A
  hgvsp: ENST00000472572.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10459C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.291G>A
  hgvsp: ENST00000315997.5:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.302G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6528
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu97Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum

16-5112501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112501
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112501
    reference: chr 16
allele count: 1
allele frequency: 8.330001332800213e-6
allele num: 120048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.283C>T
  hgvsp: ENST00000472572.3:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.294C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.397C>T
  hgvsp: ENST00000422873.1:c.397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.283C>T
  hgvsp: ENST00000315997.5:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.397C>T
  hgvsp: ENST00000350219.4:c.397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.283C>T
  hgvsp: ENST00000474471.3:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10451G>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu95Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

16-5112503-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112503
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112503
    reference: chr 16
allele count: 1
allele frequency: 8.329030001166064e-6
allele num: 120062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.281T>C
  hgvsp: ENSP00000420566.2:p.Met94Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10449A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.395T>C
  hgvsp: ENSP00000283478.4:p.Met132Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.281T>C
  hgvsp: ENSP00000417158.3:p.Met94Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.292T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.281T>C
  hgvsp: ENSP00000324672.5:p.Met94Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.395T>C
  hgvsp: ENSP00000390402.1:p.Met132Thr
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met94Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-5112504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112504
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112504
    reference: chr 16
allele count: 1
allele frequency: 8.329030001166064e-6
allele num: 120062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10448T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.394A>G
  hgvsp: ENSP00000390402.1:p.Met132Val
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.394A>G
  hgvsp: ENSP00000283478.4:p.Met132Val
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.280A>G
  hgvsp: ENSP00000324672.5:p.Met94Val
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.280A>G
  hgvsp: ENSP00000420566.2:p.Met94Val
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.280A>G
  hgvsp: ENSP00000417158.3:p.Met94Val
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.291A>G
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met94Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-5112507-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112507
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112507
    reference: chr 16
allele count: 2
allele frequency: 1.666250104140632e-5
allele num: 120030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.288G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.277G>C
  hgvsp: ENSP00000417158.3:p.Gly93Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.277G>C
  hgvsp: ENSP00000420566.2:p.Gly93Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.391G>C
  hgvsp: ENSP00000283478.4:p.Gly131Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.391G>C
  hgvsp: ENSP00000390402.1:p.Gly131Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10445C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.277G>C
  hgvsp: ENSP00000324672.5:p.Gly93Arg
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10029
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly93Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-5112510-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112510
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112510
    reference: chr 16
allele count: 1
allele frequency: 8.336112037345782e-6
allele num: 119960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.388G>C
  hgvsp: ENSP00000390402.1:p.Val130Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.285G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.274G>C
  hgvsp: ENSP00000324672.5:p.Val92Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.274G>C
  hgvsp: ENSP00000417158.3:p.Val92Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.388G>C
  hgvsp: ENSP00000283478.4:p.Val130Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.274G>C
  hgvsp: ENSP00000420566.2:p.Val92Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10442C>G
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9663
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val92Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

16-5112510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112510
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112510
    reference: chr 16
allele count: 4
allele frequency: 3.334444814938313e-5
allele num: 119960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10442C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.274G>A
  hgvsp: ENSP00000417158.3:p.Val92Met
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.274G>A
  hgvsp: ENSP00000420566.2:p.Val92Met
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.388G>A
  hgvsp: ENSP00000390402.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.274G>A
  hgvsp: ENSP00000324672.5:p.Val92Met
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.388G>A
  hgvsp: ENSP00000283478.4:p.Val130Met
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.285G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9663
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val92Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-5112511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112511
    reference: chr 16
allele count: 3
allele frequency: 2.501083802981292e-5
allele num: 119948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.273C>T
  hgvsp: ENST00000474471.3:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10441G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.273C>T
  hgvsp: ENST00000472572.3:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.387C>T
  hgvsp: ENST00000350219.4:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.284C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.273C>T
  hgvsp: ENST00000315997.5:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.387C>T
  hgvsp: ENST00000422873.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26990
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg91Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-5112512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112512
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112512
    reference: chr 16
allele count: 76
allele frequency: 6.337135614702154e-4
allele num: 119928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10440C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.386G>A
  hgvsp: ENSP00000283478.4:p.Arg129His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.272G>A
  hgvsp: ENSP00000420566.2:p.Arg91His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.386G>A
  hgvsp: ENSP00000390402.1:p.Arg129His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.283G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.272G>A
  hgvsp: ENSP00000324672.5:p.Arg91His
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.272G>A
  hgvsp: ENSP00000417158.3:p.Arg91His
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13838
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15579
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10008
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg91His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

16-5112513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112513
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112513
    reference: chr 16
allele count: 4
allele frequency: 3.338117969089028e-5
allele num: 119828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10439G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.385C>T
  hgvsp: ENSP00000283478.4:p.Arg129Cys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.282C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.385C>T
  hgvsp: ENSP00000390402.1:p.Arg129Cys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.271C>T
  hgvsp: ENSP00000420566.2:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.271C>T
  hgvsp: ENSP00000324672.5:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.271C>T
  hgvsp: ENSP00000417158.3:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6483
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg91Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

16-5112523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112523
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112523
    reference: chr 16
allele count: 1
allele frequency: 8.362742310458446e-6
allele num: 119578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10429C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.261G>A
  hgvsp: ENST00000315997.5:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.375G>A
  hgvsp: ENST00000350219.4:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.375G>A
  hgvsp: ENST00000422873.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.272G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.261G>A
  hgvsp: ENST00000472572.3:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.261G>A
  hgvsp: ENST00000474471.3:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4960
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro87Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

16-5112523-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112523
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112522
    reference: chr 16
allele count: 1
allele frequency: 8.362742310458446e-6
allele num: 119578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.271delC
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.374delC
  hgvsp: ENSP00000390402.1:p.Pro125ArgfsTer2
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.260delC
  hgvsp: ENSP00000324672.5:p.Pro87ArgfsTer2
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10427delG
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.374delC
  hgvsp: ENSP00000283478.4:p.Pro125ArgfsTer2
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.260delC
  hgvsp: ENSP00000417158.3:p.Pro87ArgfsTer2
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.260delC
  hgvsp: ENSP00000420566.2:p.Pro87ArgfsTer2
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro87ArgfsTer2
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

16-5112524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112524
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112524
    reference: chr 16
allele count: 3
allele frequency: 2.510544286001205e-5
allele num: 119496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.374C>T
  hgvsp: ENSP00000390402.1:p.Pro125Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.260C>T
  hgvsp: ENSP00000417158.3:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.260C>T
  hgvsp: ENSP00000420566.2:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.260C>T
  hgvsp: ENSP00000324672.5:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.374C>T
  hgvsp: ENSP00000283478.4:p.Pro125Leu
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.271C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10428G>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9982
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro87Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-5112539-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112539
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112539
    reference: chr 16
allele count: 1
allele frequency: 8.406469619018796e-6
allele num: 118956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10413T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.245A>G
  hgvsp: ENSP00000417158.3:p.Glu82Gly
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.256A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.359A>G
  hgvsp: ENSP00000390402.1:p.Glu120Gly
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.359A>G
  hgvsp: ENSP00000283478.4:p.Glu120Gly
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.245A>G
  hgvsp: ENSP00000324672.5:p.Glu82Gly
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.245A>G
  hgvsp: ENSP00000420566.2:p.Glu82Gly
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4942
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu82Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/16-5112540-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112540
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112540
    reference: chr 16
allele count: 1
allele frequency: 8.413542437908056e-6
allele num: 118856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.255G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.244G>T
  hgvsp: ENSP00000324672.5:p.Glu82Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10412C>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.244G>T
  hgvsp: ENSP00000420566.2:p.Glu82Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.358G>T
  hgvsp: ENSP00000283478.4:p.Glu120Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.358G>T
  hgvsp: ENSP00000390402.1:p.Glu120Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.244G>T
  hgvsp: ENSP00000417158.3:p.Glu82Ter
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu82Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

16-5112543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112543
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112543
    reference: chr 16
allele count: 20
allele frequency: 1.684522606293376e-4
allele num: 118728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.241C>T
  hgvsp: ENSP00000420566.2:p.Gln81Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.241C>T
  hgvsp: ENSP00000417158.3:p.Gln81Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10409G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.252C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.355C>T
  hgvsp: ENSP00000390402.1:p.Gln119Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.241C>T
  hgvsp: ENSP00000324672.5:p.Gln81Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.355C>T
  hgvsp: ENSP00000283478.4:p.Gln119Ter
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15323
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9961
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln81Ter
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-5112546-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112546
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112546
    reference: chr 16
allele count: 1
allele frequency: 8.454371755634839e-6
allele num: 118282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.238G>T
  hgvsp: ENSP00000417158.3:p.Ala80Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10406C>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.249G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.352G>T
  hgvsp: ENSP00000283478.4:p.Ala118Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.352G>T
  hgvsp: ENSP00000390402.1:p.Ala118Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.238G>T
  hgvsp: ENSP00000420566.2:p.Ala80Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.238G>T
  hgvsp: ENSP00000324672.5:p.Ala80Ser
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala80Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

16-5112557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112557
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112557
    reference: chr 16
allele count: 33
allele frequency: 2.804786836200449e-4
allele num: 117656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.238G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.227G>A
  hgvsp: ENSP00000420566.2:p.Arg76Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10395C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.227G>A
  hgvsp: ENSP00000417158.3:p.Arg76Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.341G>A
  hgvsp: ENSP00000390402.1:p.Arg114Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.227G>A
  hgvsp: ENSP00000324672.5:p.Arg76Gln
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.341G>A
  hgvsp: ENSP00000283478.4:p.Arg114Gln
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg76Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

16-5112558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112558
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112558
    reference: chr 16
allele count: 10
allele frequency: 8.506873553831495e-5
allele num: 117552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.226C>T
  hgvsp: ENSP00000420566.2:p.Arg76Trp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.226C>T
  hgvsp: ENSP00000417158.3:p.Arg76Trp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.340C>T
  hgvsp: ENSP00000283478.4:p.Arg114Trp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.340C>T
  hgvsp: ENSP00000390402.1:p.Arg114Trp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10394G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.237C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.226C>T
  hgvsp: ENSP00000324672.5:p.Arg76Trp
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15228
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6453
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg76Trp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-5112561-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112561
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112561
    reference: chr 16
allele count: 1
allele frequency: 8.523259976475802e-6
allele num: 117326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.223G>T
  hgvsp: ENSP00000417158.3:p.Val75Phe
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.223G>T
  hgvsp: ENSP00000420566.2:p.Val75Phe
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.337G>T
  hgvsp: ENSP00000283478.4:p.Val113Phe
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.223G>T
  hgvsp: ENSP00000324672.5:p.Val75Phe
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.337G>T
  hgvsp: ENSP00000390402.1:p.Val113Phe
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.234G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10391C>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val75Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-5112563-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112563
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112563
    reference: chr 16
allele count: 1
allele frequency: 8.533005665915763e-6
allele num: 117192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.221G>T
  hgvsp: ENSP00000324672.5:p.Ser74Ile
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.221G>T
  hgvsp: ENSP00000417158.3:p.Ser74Ile
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.232G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.221G>T
  hgvsp: ENSP00000420566.2:p.Ser74Ile
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.335G>T
  hgvsp: ENSP00000283478.4:p.Ser112Ile
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10389C>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.335G>T
  hgvsp: ENSP00000390402.1:p.Ser112Ile
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser74Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

16-5112563-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112563
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112563
    reference: chr 16
allele count: 7
allele frequency: 5.973103966141033e-5
allele num: 117192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.221G>C
  hgvsp: ENSP00000417158.3:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.335G>C
  hgvsp: ENSP00000390402.1:p.Ser112Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10389C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.232G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.221G>C
  hgvsp: ENSP00000420566.2:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.221G>C
  hgvsp: ENSP00000324672.5:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.335G>C
  hgvsp: ENSP00000283478.4:p.Ser112Thr
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser74Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-5112566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112566
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112566
    reference: chr 16
allele count: 2
allele frequency: 1.709693964780304e-5
allele num: 116980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10386T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.218A>G
  hgvsp: ENSP00000324672.5:p.Lys73Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.229A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.332A>G
  hgvsp: ENSP00000390402.1:p.Lys111Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.218A>G
  hgvsp: ENSP00000417158.3:p.Lys73Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.332A>G
  hgvsp: ENSP00000283478.4:p.Lys111Arg
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.218A>G
  hgvsp: ENSP00000420566.2:p.Lys73Arg
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6438
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Lys73Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

16-5112569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112569
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112569
    reference: chr 16
allele count: 1
allele frequency: 8.571771442286263e-6
allele num: 116662
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.215T>C
  hgvsp: ENSP00000324672.5:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10383A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.215T>C
  hgvsp: ENSP00000417158.3:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.226T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.329T>C
  hgvsp: ENSP00000390402.1:p.Leu110Pro
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.215T>C
  hgvsp: ENSP00000420566.2:p.Leu72Pro
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.329T>C
  hgvsp: ENSP00000283478.4:p.Leu110Pro
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9945
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23768
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu72Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

16-5112571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112571
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112571
    reference: chr 16
allele count: 1
allele frequency: 8.592837011067574e-6
allele num: 116376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.327G>A
  hgvsp: ENST00000350219.4:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.213G>A
  hgvsp: ENST00000315997.5:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.213G>A
  hgvsp: ENST00000472572.3:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10381C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.224G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.213G>A
  hgvsp: ENST00000474471.3:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.327G>A
  hgvsp: ENST00000422873.1:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12644
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6437
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln71Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-5112580-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112580
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112580
    reference: chr 16
allele count: 4
allele frequency: 3.46927093271349e-5
allele num: 115298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-5T>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-5T>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-5T>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10372A>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-5T>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-5T>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-5T>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
hgvs: c.209-5T>A
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-5112584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112584
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112584
    reference: chr 16
allele count: 1
allele frequency: 8.700342793506064e-6
allele num: 114938
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-9C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-9C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-9C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-9C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-9C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-9C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10368G>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-5112590-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112590
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112590
    reference: chr 16
allele count: 121
allele frequency: 1.057969747311358e-3
allele num: 114370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-15T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-15T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-15T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-15T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10362A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-15T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-15T>C
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15065
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 3
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-5112601-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112601
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112601
    reference: chr 16
allele count: 52
allele frequency: 4.599653256908325e-4
allele num: 113052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10351T>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-26A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-26A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-26A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-26A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-26A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-26A>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14921
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11444
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

16-5112602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112602
    reference: chr 16
allele count: 1
allele frequency: 8.866348660294717e-6
allele num: 112786
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-27G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10350C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-27G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-27G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-27G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-27G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-27G>C
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-5112602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112602
    reference: chr 16
allele count: 1
allele frequency: 8.866348660294717e-6
allele num: 112786
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-27G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10350C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-27G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-27G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-27G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-27G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-27G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/16-5112607-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112607
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112607
    reference: chr 16
allele count: 6
allele frequency: 5.366630292839127e-5
allele num: 111802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-32T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-32T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-32T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10345A>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-32T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-32T>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-32T>G
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-5112607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112607
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112607
    reference: chr 16
allele count: 1
allele frequency: 8.944383821398544e-6
allele num: 111802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-32T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-32T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-32T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-32T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-32T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10345A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-32T>C
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-5112616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112616
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112616
    reference: chr 16
allele count: 2
allele frequency: 1.822522735971131e-5
allele num: 109738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-41G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-41G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-41G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10336C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-41G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-41G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-41G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12956
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-5112621-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112621
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112621
    reference: chr 16
allele count: 1
allele frequency: 9.330273003788091e-6
allele num: 107178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-46G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-46G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-46G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-46G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-46G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10331C>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-46G>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8766
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-5112621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112621
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112621
    reference: chr 16
allele count: 1
allele frequency: 9.330273003788091e-6
allele num: 107178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-46G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-46G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10331C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-46G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-46G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-46G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-46G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

16-5112622-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112622
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112623
    reference: chr 16
allele count: 64
allele frequency: 6.031590455008105e-4
allele num: 106108
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-48dupA
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-48dupA
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10323dupT
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-48dupA
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-48dupA
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-48dupA
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-48dupA
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8313
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9370
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6335
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8594
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

16-5112626-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5112626
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5112626
    reference: chr 16
allele count: 1
allele frequency: 9.347891115764284e-6
allele num: 106976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.209-51A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.220-51A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-10326T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.323-51A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.323-51A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.209-51A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.209-51A>G
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9816
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

16-5115656-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115656
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115656
    reference: chr 16
allele count: 1
allele frequency: 8.914880718895982e-6
allele num: 112172
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+46C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+46C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7296G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+46C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+46C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+46C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+46C>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-5115658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115658
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115658
    reference: chr 16
allele count: 1
allele frequency: 8.912497103438442e-6
allele num: 112202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+44C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+44C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7294G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+44C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+44C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+44C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+44C>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13613
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-5115660-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115660
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115660
    reference: chr 16
allele count: 3
allele frequency: 2.666951141455089e-5
allele num: 112488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+42A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+42A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+42A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+42A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7292T>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+42A>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+42A>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31517
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

16-5115666-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115666
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115666
    reference: chr 16
allele count: 2
allele frequency: 1.770663644734046e-5
allele num: 112952
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+36G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7286C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+36G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+36G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+36G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+36G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+36G>C
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

16-5115667-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115667
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115667
    reference: chr 16
allele count: 1
allele frequency: 8.8467390919707e-6
allele num: 113036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+35G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+35G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7285C>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+35G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+35G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+35G>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+35G>C
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

16-5115668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115668
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115668
    reference: chr 16
allele count: 1
allele frequency: 8.836576356856299e-6
allele num: 113166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+34G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+34G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+34G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+34G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7284C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+34G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+34G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15197
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
  all individuals: 74
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 134
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

16-5115671-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115671
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115671
    reference: chr 16
allele count: 2
allele frequency: 1.758891194990678e-5
allele num: 113708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+31A>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+31A>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7281T>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+31A>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+31A>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+31A>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+31A>C
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30179
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 385
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 40651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 655
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 93
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

16-5115674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115674
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115674
    reference: chr 16
allele count: 1
allele frequency: 8.763934656103204e-6
allele num: 114104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+28G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+28G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+28G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+28G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+28G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7278C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+28G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
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genotype depth: GenotypeDepth
  all individuals: 35
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

16-5115687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115687
    reference: chr 16
allele count: 1
allele frequency: 8.539709649871904e-6
allele num: 117100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7265T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+15A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+15A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+15A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+15A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+15A>G
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+15A>G
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

16-5115692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115692
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115692
    reference: chr 16
allele count: 1
allele frequency: 8.490261669864665e-6
allele num: 117782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+10C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+10C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7260G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+10C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+10C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+10C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+10C>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34796
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/16-5115699-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115699
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115699
    reference: chr 16
allele count: 3
allele frequency: 2.520203632453502e-5
allele num: 119038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+3G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+3G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+3G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+3G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+3G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7253C>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+3G>T
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
hgvs: c.208+3G>T
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

16-5115699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115699
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115699
    reference: chr 16
allele count: 1
allele frequency: 8.400678774845007e-6
allele num: 119038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+3G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+3G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+3G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+3G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7253C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+3G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+3G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.25e1
  variant carriers: 0
hgvs: c.208+3G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

16-5115701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115701
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115701
    reference: chr 16
allele count: 2
allele frequency: 1.676417830380044e-5
allele num: 119302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7251C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.208+1G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.208+1G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.322+1G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.208+1G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.322+1G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.219+1G>A
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35290
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
hgvs: c.208+1G>A
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

16-5115714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115714
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115714
    reference: chr 16
allele count: 1
allele frequency: 8.305233958440609e-6
allele num: 120406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.310C>T
  hgvsp: ENSP00000390402.1:p.Arg104Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.196C>T
  hgvsp: ENSP00000324672.5:p.Arg66Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.196C>T
  hgvsp: ENSP00000417158.3:p.Arg66Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.310C>T
  hgvsp: ENSP00000283478.4:p.Arg104Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.196C>T
  hgvsp: ENSP00000420566.2:p.Arg66Ter
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.207C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7238G>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg66Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-5115715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115715
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115715
    reference: chr 16
allele count: 4
allele frequency: 3.320990319313219e-5
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.195C>T
  hgvsp: ENST00000472572.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.309C>T
  hgvsp: ENST00000422873.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.195C>T
  hgvsp: ENST00000474471.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.195C>T
  hgvsp: ENST00000315997.5:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7237G>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.206C>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.309C>T
  hgvsp: ENST00000350219.4:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val65Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-5115715-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115715
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115715
    reference: chr 16
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7237G>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.195C>A
  hgvsp: ENST00000472572.3:c.195C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.206C>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.309C>A
  hgvsp: ENST00000422873.1:c.309C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.195C>A
  hgvsp: ENST00000474471.3:c.195C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.195C>A
  hgvsp: ENST00000315997.5:c.195C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.309C>A
  hgvsp: ENST00000350219.4:c.309C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val65Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-5115722-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115722
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115722
    reference: chr 16
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.188T>C
  hgvsp: ENSP00000324672.5:p.Val63Ala
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.188T>C
  hgvsp: ENSP00000420566.2:p.Val63Ala
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.199T>C
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.302T>C
  hgvsp: ENSP00000390402.1:p.Val101Ala
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.188T>C
  hgvsp: ENSP00000417158.3:p.Val63Ala
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7230A>G
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.302T>C
  hgvsp: ENSP00000283478.4:p.Val101Ala
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50823
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val63Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-5115725-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115725
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115725
    reference: chr 16
allele count: 3
allele frequency: 2.486943546381497e-5
allele num: 120630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.185T>A
  hgvsp: ENSP00000420566.2:p.Met62Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7227A>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.299T>A
  hgvsp: ENSP00000283478.4:p.Met100Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.196T>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.299T>A
  hgvsp: ENSP00000390402.1:p.Met100Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.185T>A
  hgvsp: ENSP00000324672.5:p.Met62Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.185T>A
  hgvsp: ENSP00000417158.3:p.Met62Lys
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met62Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

16-5115728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115728
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115728
    reference: chr 16
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.296G>A
  hgvsp: ENSP00000390402.1:p.Gly99Asp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.182G>A
  hgvsp: ENSP00000324672.5:p.Gly61Asp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7224C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.296G>A
  hgvsp: ENSP00000283478.4:p.Gly99Asp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.182G>A
  hgvsp: ENSP00000420566.2:p.Gly61Asp
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.193G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.182G>A
  hgvsp: ENSP00000417158.3:p.Gly61Asp
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly61Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/16-5115732-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115732
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115732
    reference: chr 16
allele count: 2
allele frequency: 1.657412778652524e-5
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.189G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.178G>T
  hgvsp: ENSP00000324672.5:p.Asp60Tyr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7220C>A
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.178G>T
  hgvsp: ENSP00000417158.3:p.Asp60Tyr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.178G>T
  hgvsp: ENSP00000420566.2:p.Asp60Tyr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.292G>T
  hgvsp: ENSP00000283478.4:p.Asp98Tyr
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.292G>T
  hgvsp: ENSP00000390402.1:p.Asp98Tyr
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp60Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

16-5115737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115737
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115737
    reference: chr 16
allele count: 3
allele frequency: 2.48554242820925e-5
allele num: 120698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.287A>G
  hgvsp: ENSP00000283478.4:p.Asn96Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.173A>G
  hgvsp: ENSP00000420566.2:p.Asn58Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7215T>C
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.173A>G
  hgvsp: ENSP00000417158.3:p.Asn58Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.173A>G
  hgvsp: ENSP00000324672.5:p.Asn58Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.287A>G
  hgvsp: ENSP00000390402.1:p.Asn96Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.184A>G
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn58Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-5115751-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115751
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115751
    reference: chr 16
allele count: 619
allele frequency: 5.126888417704745e-3
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.273G>T
  hgvsp: ENSP00000390402.1:p.Arg91Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.170G>T
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.273G>T
  hgvsp: ENSP00000283478.4:p.Arg91Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.159G>T
  hgvsp: ENSP00000324672.5:p.Arg53Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.159G>T
  hgvsp: ENSP00000417158.3:p.Arg53Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.159G>T
  hgvsp: ENSP00000420566.2:p.Arg53Ser
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7201C>A
  variant of: http://identifiers.org/hgnc/18294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 19969
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 35182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg53Ser
num of homozygotes: 11
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

16-5115752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5115752
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 5115752
    reference: chr 16
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000417158
  ensembl transcript: ENST00000474471
  gene symbol: C16orf89
  hgvsc: ENST00000474471.3:c.158G>A
  hgvsp: ENSP00000417158.3:p.Arg53Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000390402
  ensembl transcript: ENST00000422873
  gene symbol: C16orf89
  hgvsc: ENST00000422873.1:c.272G>A
  hgvsp: ENSP00000390402.1:p.Arg91Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153446
  ensembl transcript: ENST00000591875
  gene symbol: C16orf89
  hgvsc: ENST00000591875.1:n.169G>A
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000324672
  ensembl transcript: ENST00000315997
  gene symbol: C16orf89
  hgvsc: ENST00000315997.5:c.158G>A
  hgvsp: ENSP00000324672.5:p.Arg53Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033011
  ensembl protein: ENSP00000468118
  ensembl transcript: ENST00000588623
  gene symbol: ALG1
  hgvsc: ENST00000588623.1:c.-125-7200C>T
  variant of: http://identifiers.org/hgnc/18294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000283478
  ensembl transcript: ENST00000350219
  gene symbol: C16orf89
  hgvsc: ENST00000350219.4:c.272G>A
  hgvsp: ENSP00000283478.4:p.Arg91Lys
  variant of: http://identifiers.org/hgnc/28687
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153446
  ensembl protein: ENSP00000420566
  ensembl transcript: ENST00000472572
  gene symbol: C16orf89
  hgvsc: ENST00000472572.3:c.158G>A
  hgvsp: ENSP00000420566.2:p.Arg53Lys
  variant of: http://identifiers.org/hgnc/28687
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg53Lys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6557
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4991
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.017099e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9750
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.535e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.415e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 2.018379e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.386e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.657e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 2.018676e6

QD
type: SiteQuality
SIO_000300: 1.378e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027960526315789e-4
allele num: 9728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 8.612e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

DP
type: SiteQuality
SIO_000300: 2.019514e6

QD
type: SiteQuality
SIO_000300: 2.054e1

VQSLOD
type: SiteQuality
SIO_000300: -8.824e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4991
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

FS
type: SiteQuality
SIO_000300: 1.321e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 2.019748e6

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6554
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505434618974498e-5
allele num: 66426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.02083e6

QD
type: SiteQuality
SIO_000300: 1.175e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 1.273e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.020866e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e0

QD
type: SiteQuality
SIO_000300: 1.412e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 2.021107e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.745e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.871e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 40

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
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African
type: Population
allele count: 38
allele frequency: 3.90223865270076e-3
allele num: 9738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.02281e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.078e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3686
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.142e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.053809817210926e-4
allele num: 9738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

DP
type: SiteQuality
SIO_000300: 2.021044e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
SIO_000300: 4.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.369e1

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 2.021043e6

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.432e0

GenotypeQuality
all individuals: 26975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.325e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.617e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.689e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.91e-1

DP
type: SiteQuality
SIO_000300: 2.018666e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

FS
type: SiteQuality
SIO_000300: 9.949999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.643e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

DP
type: SiteQuality
SIO_000300: 2.018496e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9678
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

DP
type: SiteQuality
SIO_000300: 2.018414e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.282e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.793e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 9.477e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 3668
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variant carriers: 0

GenotypeQuality
all individuals: 586
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variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016409266409266e-5
allele num: 66304
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 2.825e1

VQSLOD
type: SiteQuality
SIO_000300: -1.139e0

DP
type: SiteQuality
SIO_000300: 2.017696e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.795e0

FS
type: SiteQuality
SIO_000300: 3.153e0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 2.016384e6

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 3.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018594542381067e-5
allele num: 66256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 3.184e0

DP
type: SiteQuality
SIO_000300: 2.016384e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.256e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018776791644026e-5
allele num: 66252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.407e0

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.016246e6

QD
type: SiteQuality
SIO_000300: 1.043e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 76

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 74
allele frequency: 7.632013201320132e-3
allele num: 9696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

DP
type: SiteQuality
SIO_000300: 2.019031e6

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.44e0

QD
type: SiteQuality
SIO_000300: 1.29e1

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26779
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224589762429586e-4
allele num: 16332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.034340091021928e-4
allele num: 9668
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

FS
type: SiteQuality
SIO_000300: 1.435e0

DP
type: SiteQuality
SIO_000300: 2.013307e6

QD
type: SiteQuality
SIO_000300: 1.261e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9547
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-5
allele num: 66080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.007658e6

QD
type: SiteQuality
SIO_000300: 1.237e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.138e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.007658e6

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.138e0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 4957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9533
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.082465639316951e-4
allele num: 9604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.291e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.006145e6

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520034048762692e-5
allele num: 65788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16054
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.464e0

MQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.995339e6

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
all individuals: 9443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4941
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.243756243756244e-5
allele num: 16016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.48e-1

QD
type: SiteQuality
SIO_000300: 8.98e0

FS
type: SiteQuality
SIO_000300: 4.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

DP
type: SiteQuality
SIO_000300: 1.993599e6

GenotypeQuality
all individuals: 3593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6481
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 3546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.054629824931449e-4
allele num: 9482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.474031613687685e-4
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.283939338571168e-4
allele num: 65676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

FS
type: SiteQuality
SIO_000300: 1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.407e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

DP
type: SiteQuality
SIO_000300: 1.992573e6

GenotypeQuality
all individuals: 2180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25070
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526950679493052e-5
allele num: 65490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

QD
type: SiteQuality
SIO_000300: 1.539e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQ
type: SiteQuality
SIO_000300: 5.823e1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.98522e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.701e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3539
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.067296484878228e-5
allele num: 65204
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.739432944859976e-4
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 3.103595890410959e-3
allele num: 9344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.905e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

QD
type: SiteQuality
SIO_000300: 1.164e1

DP
type: SiteQuality
SIO_000300: 1.977547e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.50140056022409e-4
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.220819376449369e-4
allele num: 15524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534919416730622e-5
allele num: 65150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.071352046282408e-4
allele num: 9334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 6.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

DP
type: SiteQuality
SIO_000300: 1.9749e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4917
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2299
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.073191672032625e-4
allele num: 9318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65058
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.064e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

DP
type: SiteQuality
SIO_000300: 1.969905e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.559e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

FS
type: SiteQuality
SIO_000300: 1.368e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6444
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538366869731093e-5
allele num: 65004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.239e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 1.968201e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 4918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6444
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 9220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.076856808811765e-4
allele num: 65004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 1.968201e6

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080999476230089e-5
allele num: 64914
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.085e0

FS
type: SiteQuality
SIO_000300: 5.063e0

QD
type: SiteQuality
SIO_000300: 1.176e1

DP
type: SiteQuality
SIO_000300: 1.963158e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6437
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542828931128116e-5
allele num: 64816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.16e-1

DP
type: SiteQuality
SIO_000300: 1.95751e6

FS
type: SiteQuality
SIO_000300: 9.04e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4911
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545021939311538e-5
allele num: 64724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

DP
type: SiteQuality
SIO_000300: 1.954121e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.101e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.398e0

GenotypeQuality
all individuals: 4792
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6436
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4898
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.667226733874731e-5
allele num: 64278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.093374152635032e-4
allele num: 9146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.935584e6

MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

GenotypeQuality
all individuals: 438
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6431
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171783454417624e-4
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 2.955e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.121e0

DP
type: SiteQuality
SIO_000300: 1.93021e6

QD
type: SiteQuality
SIO_000300: 1.161e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 9.75e1
variant carriers: 118

GenotypeQuality
all individuals: 21539
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63884
num of homozygotes: 0

African
type: Population
allele count: 118
allele frequency: 1.301566291639091e-2
allele num: 9066
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.620087336244541e-4
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14010
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.519e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

DP
type: SiteQuality
SIO_000300: 1.922231e6

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 7.5e0
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GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6389
bin: 9.75e1
variant carriers: 52

GenotypeQuality
all individuals: 4881
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63264
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.622377622377622e-4
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 49
allele frequency: 5.535472209670131e-3
allele num: 8852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 1.895727e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5557
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 4879
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63164
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.450454477723141e-5
allele num: 13422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e0

DP
type: SiteQuality
SIO_000300: 1.891711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

QD
type: SiteQuality
SIO_000300: 1.176e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
all individuals: 857
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583180292571718e-5
allele num: 63164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

DP
type: SiteQuality
SIO_000300: 1.891711e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 6342
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2287
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variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.749781277340332e-4
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.378161176132921e-5
allele num: 62714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

QD
type: SiteQuality
SIO_000300: 1.561e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

DP
type: SiteQuality
SIO_000300: 1.865738e6

GenotypeQuality
all individuals: 5577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 1601
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GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 3509
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GenotypeQuality
all individuals: 2287
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variant carriers: 0

GenotypeQuality
all individuals: 4849
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variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17813383600377e-4
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13044
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

DP
type: SiteQuality
SIO_000300: 1.865738e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

QD
type: SiteQuality
SIO_000300: 1.561e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
all individuals: 1479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4791
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6333
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.246742536698004e-5
allele num: 12126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.843e1

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.417e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 9.214e0

VQSLOD
type: SiteQuality
SIO_000300: -1.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 1.812957e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 431
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
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variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648858989579211e-5
allele num: 60648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

DP
type: SiteQuality
SIO_000300: 1.765084e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.192e-1

MQ
type: SiteQuality
SIO_000300: 6.06e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1512
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.837044892188053e-5
allele num: 11316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60648
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8378
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South Asian
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.06e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.78826895565093e-4
allele num: 11184
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.305483028720627e-3
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.225092250922509e-4
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 9.144415256209889e-4
allele num: 60146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.763716e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.1936022917164e-4
allele num: 8378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.436e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.49e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

DP
type: SiteQuality
SIO_000300: 1.756239e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 607
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572772168223711e-5
allele num: 63582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.89e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 5.051e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.695000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.225303e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 2405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4481
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GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572079861656972e-5
allele num: 63610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.616e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

DP
type: SiteQuality
SIO_000300: 1.2344e6

QD
type: SiteQuality
SIO_000300: 7.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

GenotypeQuality
all individuals: 234
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.214056138847225e-4
allele num: 9334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.511e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 6.206e0

DP
type: SiteQuality
SIO_000300: 1.248962e6

GenotypeQuality
all individuals: 302
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.380952380952381e-4
allele num: 8400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.294492e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e0

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.012e1

GenotypeQuality
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3899
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variant carriers: 0

GenotypeQuality
all individuals: 2574
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1179
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563721657544957e-5
allele num: 63950
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.386e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 8.4e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

FS
type: SiteQuality
SIO_000300: 3.074e0

DP
type: SiteQuality
SIO_000300: 1.30194e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

GenotypeQuality
all individuals: 1738
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 5333
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64004
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.716049382716049e-5
allele num: 12960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

QD
type: SiteQuality
SIO_000300: 2.357e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 1.309206e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13098
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.903133903133904e-5
allele num: 11232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556517137253681e-5
allele num: 64246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

DP
type: SiteQuality
SIO_000300: 1.32774e6

QD
type: SiteQuality
SIO_000300: 1.093e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeQuality
all individuals: 1979
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 775
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55337392817199e-5
allele num: 64376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 1.345584e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 2.147e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 138
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528444349341241e-5
allele num: 65426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14666
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -5.998e-1

DP
type: SiteQuality
SIO_000300: 1.41064e6

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.664001066240171e-5
allele num: 15006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 2.775e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.077e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 1.425384e6

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15664
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.540226405956777e-5
allele num: 66076
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444981e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.117e0

QD
type: SiteQuality
SIO_000300: 1.23e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: -3.974e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 1.0021e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513408801985592e-5
allele num: 66076
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.117e0

FS
type: SiteQuality
SIO_000300: 1.0021e1

DP
type: SiteQuality
SIO_000300: 1.444981e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.974e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.332320162107397e-5
allele num: 15792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66152
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.878e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.449106e6

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.301e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

DP
type: SiteQuality
SIO_000300: 1.46582e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.342e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.01087969224296e-5
allele num: 66546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.466272e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

DP
type: SiteQuality
SIO_000300: 1.466272e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502070952638214e-5
allele num: 66636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-1

FS
type: SiteQuality
SIO_000300: 5.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 4.9e0

DP
type: SiteQuality
SIO_000300: 1.470198e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.208e1

FS
type: SiteQuality
SIO_000300: 1.737e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.470565e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.385e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2544e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.102e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.471129e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.75e1
variant carriers: 608

GenotypeQuality
all individuals: 6526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.679343128781331e-3
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 114
allele frequency: 1.724659606656581e-2
allele num: 6610
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.079967360261118e-4
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 463
allele frequency: 6.939448441247002e-3
allele num: 66720
num of homozygotes: 9

Other
type: Population
allele count: 6
allele frequency: 6.681514476614699e-3
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

DP
type: SiteQuality
SIO_000300: 1.499921e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.042e0