17-42398887-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398887
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398887
    reference: chr 17
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.408C>G
  hgvsp: ENST00000588049.1:c.408C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.363C>G
  hgvsp: ENST00000537904.2:c.363C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.408C>G
  hgvsp: ENST00000590194.1:c.408C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.432C>G
  hgvsp: ENST00000377095.5:c.432C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.408C>G
  hgvsp: ENST00000225308.8:c.408C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.36C>G
  hgvsp: ENST00000586016.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467964
  ensembl transcript: ENST00000593166
  gene symbol: SLC25A39
  hgvsc: ENST00000593166.1:c.6C>G
  hgvsp: ENST00000593166.1:c.6C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.540C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.135C>G
  hgvsp: ENST00000588767.1:c.135C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.993C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.387C>G
  hgvsp: ENST00000585636.1:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.519C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala144Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-42398892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398892
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398892
    reference: chr 17
allele count: 3
allele frequency: 2.488593944421402e-5
allele num: 120550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.988A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.535A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.358A>G
  hgvsp: ENSP00000444540.1:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.403A>G
  hgvsp: ENSP00000467681.1:p.Thr135Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.427A>G
  hgvsp: ENSP00000366299.4:p.Thr143Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.31A>G
  hgvsp: ENSP00000466676.1:p.Thr11Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.403A>G
  hgvsp: ENSP00000225308.8:p.Thr135Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467964
  ensembl transcript: ENST00000593166
  gene symbol: SLC25A39
  hgvsc: ENST00000593166.1:c.1A>G
  hgvsp: ENSP00000467964.1:p.Thr1?
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.403A>G
  hgvsp: ENSP00000465182.1:p.Thr135Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.130A>G
  hgvsp: ENSP00000466615.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.382A>G
  hgvsp: ENSP00000465554.1:p.Thr128Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.514A>G
  variant of: http://identifiers.org/hgnc/24279
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1?
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-42398904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398904
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398904
    reference: chr 17
allele count: 3
allele frequency: 2.49012251402769e-5
allele num: 120476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.370G>A
  hgvsp: ENSP00000465554.1:p.Ala124Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.391G>A
  hgvsp: ENSP00000465182.1:p.Ala131Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.118G>A
  hgvsp: ENSP00000466615.1:p.Ala40Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.523G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.976G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.19G>A
  hgvsp: ENSP00000466676.1:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.346G>A
  hgvsp: ENSP00000444540.1:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.391G>A
  hgvsp: ENSP00000225308.8:p.Ala131Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.415G>A
  hgvsp: ENSP00000366299.4:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.391G>A
  hgvsp: ENSP00000467681.1:p.Ala131Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.502G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-42398905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398905
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398905
    reference: chr 17
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.345C>T
  hgvsp: ENST00000537904.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.390C>T
  hgvsp: ENST00000225308.8:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.18C>T
  hgvsp: ENST00000586016.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.522C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.390C>T
  hgvsp: ENST00000588049.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.975C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.390C>T
  hgvsp: ENST00000590194.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.117C>T
  hgvsp: ENST00000588767.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.369C>T
  hgvsp: ENST00000585636.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.414C>T
  hgvsp: ENST00000377095.5:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.501C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr138Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

17-42398906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398906
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398906
    reference: chr 17
allele count: 2
allele frequency: 1.66024704476026e-5
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.389C>T
  hgvsp: ENSP00000465182.1:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.500C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.389C>T
  hgvsp: ENSP00000467681.1:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.344C>T
  hgvsp: ENSP00000444540.1:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.974C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.17C>T
  hgvsp: ENSP00000466676.1:p.Thr6Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.413C>T
  hgvsp: ENSP00000366299.4:p.Thr138Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.368C>T
  hgvsp: ENSP00000465554.1:p.Thr123Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.521C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.116C>T
  hgvsp: ENSP00000466615.1:p.Thr39Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.389C>T
  hgvsp: ENSP00000225308.8:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr138Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

17-42398911-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398911
    reference: chr 17
allele count: 1
allele frequency: 8.300821781356355e-6
allele num: 120470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.339A>G
  hgvsp: ENST00000537904.2:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.495A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.384A>G
  hgvsp: ENST00000588049.1:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.111A>G
  hgvsp: ENST00000588767.1:c.111A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.384A>G
  hgvsp: ENST00000590194.1:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.363A>G
  hgvsp: ENST00000585636.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.408A>G
  hgvsp: ENST00000377095.5:c.408A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.516A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.384A>G
  hgvsp: ENST00000225308.8:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.12A>G
  hgvsp: ENST00000586016.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.969A>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro136Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-42398915-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398915
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398915
    reference: chr 17
allele count: 2
allele frequency: 1.660743348722888e-5
allele num: 120428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.512T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.359T>C
  hgvsp: ENSP00000465554.1:p.Val120Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.380T>C
  hgvsp: ENSP00000467681.1:p.Val127Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.491T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.107T>C
  hgvsp: ENSP00000466615.1:p.Val36Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.965T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.380T>C
  hgvsp: ENSP00000225308.8:p.Val127Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.335T>C
  hgvsp: ENSP00000444540.1:p.Val112Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.404T>C
  hgvsp: ENSP00000366299.4:p.Val135Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.380T>C
  hgvsp: ENSP00000465182.1:p.Val127Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.8T>C
  hgvsp: ENSP00000466676.1:p.Val3Ala
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val135Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-42398916-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398916
    reference: chr 17
allele count: 1
allele frequency: 8.305785810395521e-6
allele num: 120398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.511G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.106G>C
  hgvsp: ENSP00000466615.1:p.Val36Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.7G>C
  hgvsp: ENSP00000466676.1:p.Val3Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.490G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.358G>C
  hgvsp: ENSP00000465554.1:p.Val120Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.379G>C
  hgvsp: ENSP00000467681.1:p.Val127Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.379G>C
  hgvsp: ENSP00000225308.8:p.Val127Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.379G>C
  hgvsp: ENSP00000465182.1:p.Val127Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.334G>C
  hgvsp: ENSP00000444540.1:p.Val112Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.403G>C
  hgvsp: ENSP00000366299.4:p.Val135Leu
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.964G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val135Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-42398917-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398917
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398917
    reference: chr 17
allele count: 2
allele frequency: 1.660715768496222e-5
allele num: 120430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.105T>C
  hgvsp: ENST00000588767.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.489T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.378T>C
  hgvsp: ENST00000588049.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.510T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.963T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.333T>C
  hgvsp: ENST00000537904.2:c.333T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.402T>C
  hgvsp: ENST00000377095.5:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.357T>C
  hgvsp: ENST00000585636.1:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.6T>C
  hgvsp: ENST00000586016.1:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.378T>C
  hgvsp: ENST00000590194.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.378T>C
  hgvsp: ENST00000225308.8:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr134Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-42398918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398918
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398918
    reference: chr 17
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.356C>T
  hgvsp: ENSP00000465554.1:p.Thr119Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.104C>T
  hgvsp: ENSP00000466615.1:p.Thr35Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.377C>T
  hgvsp: ENSP00000465182.1:p.Thr126Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.332C>T
  hgvsp: ENSP00000444540.1:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.509C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.5C>T
  hgvsp: ENSP00000466676.1:p.Thr2Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.377C>T
  hgvsp: ENSP00000225308.8:p.Thr126Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.401C>T
  hgvsp: ENSP00000366299.4:p.Thr134Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.377C>T
  hgvsp: ENSP00000467681.1:p.Thr126Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.488C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.962C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr134Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-42398919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398919
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398919
    reference: chr 17
allele count: 1
allele frequency: 8.304958059961797e-6
allele num: 120410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.400A>G
  hgvsp: ENSP00000366299.4:p.Thr134Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.4A>G
  hgvsp: ENSP00000466676.1:p.Thr2Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.376A>G
  hgvsp: ENSP00000467681.1:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.487A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.103A>G
  hgvsp: ENSP00000466615.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.376A>G
  hgvsp: ENSP00000225308.8:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.376A>G
  hgvsp: ENSP00000465182.1:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.961A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.508A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.331A>G
  hgvsp: ENSP00000444540.1:p.Thr111Ala
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.355A>G
  hgvsp: ENSP00000465554.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11740
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr134Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-42398921-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398921
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398921
    reference: chr 17
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.101T>G
  hgvsp: ENSP00000466615.1:p.Met34Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.2T>G
  hgvsp: ENSP00000466676.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.485T>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.329T>G
  hgvsp: ENSP00000444540.1:p.Met110Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.353T>G
  hgvsp: ENSP00000465554.1:p.Met118Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.374T>G
  hgvsp: ENSP00000225308.8:p.Met125Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.506T>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.374T>G
  hgvsp: ENSP00000467681.1:p.Met125Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.398T>G
  hgvsp: ENSP00000366299.4:p.Met133Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.374T>G
  hgvsp: ENSP00000465182.1:p.Met125Arg
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.959T>G
  variant of: http://identifiers.org/hgnc/24279
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11718
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-42398927-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398927
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398927
    reference: chr 17
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-1G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-1G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
hgvs: c.393-1G>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-42398936-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398936
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398936
    reference: chr 17
allele count: 4
allele frequency: 3.327897766980598e-5
allele num: 120196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-10G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-10G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-42398938-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398938
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398937
    reference: chr 17
allele count: 1
allele frequency: 8.315870006320061e-6
allele num: 120252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-13delT
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-13delT
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: GA
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

17-42398944-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398944
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398944
    reference: chr 17
allele count: 1
allele frequency: 8.322237017310253e-6
allele num: 120160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-18C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-18C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-42398945-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398945
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398945
    reference: chr 17
allele count: 6
allele frequency: 4.992511233150274e-5
allele num: 120180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-19C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-42398952-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398952
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398952
    reference: chr 17
allele count: 2
allele frequency: 1.665556295802798e-5
allele num: 120080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-26C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-26C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-42398954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398954
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398954
    reference: chr 17
allele count: 1
allele frequency: 8.329307501374335e-6
allele num: 120058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-28C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-28C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-42398954-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398954
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398954
    reference: chr 17
allele count: 1
allele frequency: 8.329307501374335e-6
allele num: 120058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-28C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-28C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS

17-42398957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398957
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398957
    reference: chr 17
allele count: 2
allele frequency: 1.666722224074136e-5
allele num: 119996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-31A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-31A>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8760
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-42398965-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398965
    reference: chr 17
allele count: 42
allele frequency: 3.504965367604106e-4
allele num: 119830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-39C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-39C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10029
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-42398966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398966
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398966
    reference: chr 17
allele count: 2
allele frequency: 1.669003271246412e-5
allele num: 119832
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-40C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-40C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10027
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-42398977-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42398977
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42398977
    reference: chr 17
allele count: 1
allele frequency: 8.357430591538938e-6
allele num: 119654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.96-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.393-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.369-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.954-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.480-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.369-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.348-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.324-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.501-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-4-51A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.369-51A>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4301
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-42399024-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399024
    reference: chr 17
allele count: 1
allele frequency: 8.438818565400844e-6
allele num: 118500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+44A>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+44A>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-42399025-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399025
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399025
    reference: chr 17
allele count: 1
allele frequency: 8.447087444249223e-6
allele num: 118384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+43G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+43G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

17-42399028-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399028
    reference: chr 17
allele count: 1
allele frequency: 8.439103429651633e-6
allele num: 118496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+40C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+40C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

17-42399028-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399028
    reference: chr 17
allele count: 1
allele frequency: 8.439103429651633e-6
allele num: 118496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+40C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+40C>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

17-42399034-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399034
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399034
    reference: chr 17
allele count: 1
allele frequency: 8.451370812345762e-6
allele num: 118324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+34G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+34G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-42399044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399044
    reference: chr 17
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+24C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+24C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

17-42399047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399047
    reference: chr 17
allele count: 4
allele frequency: 3.377693710734311e-5
allele num: 118424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+21C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+21C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29371
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-42399056-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399056
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399056
    reference: chr 17
allele count: 2
allele frequency: 1.690274162469152e-5
allele num: 118324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+12G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+12G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-42399057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399057
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399057
    reference: chr 17
allele count: 1
allele frequency: 8.456087537418188e-6
allele num: 118258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+11G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+11G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-42399058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399058
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399058
    reference: chr 17
allele count: 1
allele frequency: 8.449514152936206e-6
allele num: 118350
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.392+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.479+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-5+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.953+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.368+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.500+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.347+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.368+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.323+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.95+10C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.368+10C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

17-42399071-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399071
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399071
    reference: chr 17
allele count: 35
allele frequency: 2.959630638096366e-4
allele num: 118258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.365C>T
  hgvsp: ENSP00000225308.8:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.320C>T
  hgvsp: ENSP00000444540.1:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.92C>T
  hgvsp: ENSP00000466615.1:p.Thr31Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.389C>T
  hgvsp: ENSP00000366299.4:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.344C>T
  hgvsp: ENSP00000465554.1:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.950C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.365C>T
  hgvsp: ENSP00000467681.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.497C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.365C>T
  hgvsp: ENSP00000465182.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.476C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29616
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Thr130Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-42399075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399075
    reference: chr 17
allele count: 1
allele frequency: 8.468547813420954e-6
allele num: 118084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.340G>A
  hgvsp: ENSP00000465554.1:p.Ala114Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.361G>A
  hgvsp: ENSP00000467681.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.88G>A
  hgvsp: ENSP00000466615.1:p.Ala30Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.385G>A
  hgvsp: ENSP00000366299.4:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.316G>A
  hgvsp: ENSP00000444540.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.361G>A
  hgvsp: ENSP00000465182.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.361G>A
  hgvsp: ENSP00000225308.8:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.472G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.493G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.946G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala129Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

17-42399076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399076
    reference: chr 17
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.945C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.360C>T
  hgvsp: ENST00000590194.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.360C>T
  hgvsp: ENST00000225308.8:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.360C>T
  hgvsp: ENST00000588049.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.471C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.87C>T
  hgvsp: ENST00000588767.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.315C>T
  hgvsp: ENST00000537904.2:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.492C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.339C>T
  hgvsp: ENST00000585636.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.384C>T
  hgvsp: ENST00000377095.5:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro128Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-42399076-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399076
    reference: chr 17
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.360C>G
  hgvsp: ENST00000588049.1:c.360C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.360C>G
  hgvsp: ENST00000590194.1:c.360C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.384C>G
  hgvsp: ENST00000377095.5:c.384C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.360C>G
  hgvsp: ENST00000225308.8:c.360C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.471C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.315C>G
  hgvsp: ENST00000537904.2:c.315C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.339C>G
  hgvsp: ENST00000585636.1:c.339C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.945C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-13C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.492C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.87C>G
  hgvsp: ENST00000588767.1:c.87C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro128Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-42399081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399081
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399081
    reference: chr 17
allele count: 2
allele frequency: 1.694427029499975e-5
allele num: 118034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.355C>T
  hgvsp: ENSP00000467681.1:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.940C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.82C>T
  hgvsp: ENSP00000466615.1:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.379C>T
  hgvsp: ENSP00000366299.4:p.Leu127Phe
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.355C>T
  hgvsp: ENSP00000225308.8:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.466C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.355C>T
  hgvsp: ENSP00000465182.1:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.334C>T
  hgvsp: ENSP00000465554.1:p.Leu112Phe
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.487C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.310C>T
  hgvsp: ENSP00000444540.1:p.Leu104Phe
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10834
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu127Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-42399084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399084
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399084
    reference: chr 17
allele count: 3
allele frequency: 2.543191875349689e-5
allele num: 117962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.331G>A
  hgvsp: ENSP00000465554.1:p.Gly111Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.352G>A
  hgvsp: ENSP00000465182.1:p.Gly118Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.79G>A
  hgvsp: ENSP00000466615.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.352G>A
  hgvsp: ENSP00000467681.1:p.Gly118Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.937G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.352G>A
  hgvsp: ENSP00000225308.8:p.Gly118Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.463G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.376G>A
  hgvsp: ENSP00000366299.4:p.Gly126Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.307G>A
  hgvsp: ENSP00000444540.1:p.Gly103Ser
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.484G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly126Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-42399085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399085
    reference: chr 17
allele count: 8
allele frequency: 6.785986936975147e-5
allele num: 117890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.351C>T
  hgvsp: ENST00000225308.8:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.306C>T
  hgvsp: ENST00000537904.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.351C>T
  hgvsp: ENST00000588049.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.78C>T
  hgvsp: ENST00000588767.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.936C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.375C>T
  hgvsp: ENST00000377095.5:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.330C>T
  hgvsp: ENST00000585636.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.351C>T
  hgvsp: ENST00000590194.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.483C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.462C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser125Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-42399092-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399092
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399092
    reference: chr 17
allele count: 1
allele frequency: 8.483779014524229e-6
allele num: 117872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-29T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.323T>C
  hgvsp: ENSP00000465554.1:p.Leu108Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.344T>C
  hgvsp: ENSP00000467681.1:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.476T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.344T>C
  hgvsp: ENSP00000465182.1:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.455T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.71T>C
  hgvsp: ENSP00000466615.1:p.Leu24Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.344T>C
  hgvsp: ENSP00000225308.8:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.299T>C
  hgvsp: ENSP00000444540.1:p.Leu100Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.368T>C
  hgvsp: ENSP00000366299.4:p.Leu123Pro
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.929T>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu123Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

17-42399097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399097
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399097
    reference: chr 17
allele count: 1
allele frequency: 8.496032352891199e-6
allele num: 117702
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.363G>A
  hgvsp: ENST00000377095.5:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-34G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.339G>A
  hgvsp: ENST00000590194.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.471G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.924G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.66G>A
  hgvsp: ENST00000588767.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.294G>A
  hgvsp: ENST00000537904.2:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.339G>A
  hgvsp: ENST00000588049.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.318G>A
  hgvsp: ENST00000585636.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.450G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.339G>A
  hgvsp: ENST00000225308.8:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg121Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

17-42399100-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399100
    reference: chr 17
allele count: 1
allele frequency: 8.508900309723971e-6
allele num: 117524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.315C>T
  hgvsp: ENST00000585636.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.336C>T
  hgvsp: ENST00000225308.8:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.468C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.921C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.291C>T
  hgvsp: ENST00000537904.2:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.447C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.336C>T
  hgvsp: ENST00000588049.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.336C>T
  hgvsp: ENST00000590194.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.360C>T
  hgvsp: ENST00000377095.5:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.63C>T
  hgvsp: ENST00000588767.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-37C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr120Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

17-42399106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399106
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399106
    reference: chr 17
allele count: 1
allele frequency: 8.529657619543152e-6
allele num: 117238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.462G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.330G>A
  hgvsp: ENST00000225308.8:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.330G>A
  hgvsp: ENST00000590194.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.330G>A
  hgvsp: ENST00000588049.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.441G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.309G>A
  hgvsp: ENST00000585636.1:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.354G>A
  hgvsp: ENST00000377095.5:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.285G>A
  hgvsp: ENST00000537904.2:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.915G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.57G>A
  hgvsp: ENST00000588767.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29142
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu118Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-42399108-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399108
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399108
    reference: chr 17
allele count: 1
allele frequency: 8.54686244679578e-6
allele num: 117002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-45G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.352G>A
  hgvsp: ENSP00000366299.4:p.Glu118Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.460G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.328G>A
  hgvsp: ENSP00000467681.1:p.Glu110Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.307G>A
  hgvsp: ENSP00000465554.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.283G>A
  hgvsp: ENSP00000444540.1:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.328G>A
  hgvsp: ENSP00000225308.8:p.Glu110Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.55G>A
  hgvsp: ENSP00000466615.1:p.Glu19Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.328G>A
  hgvsp: ENSP00000465182.1:p.Glu110Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.913G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.439G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu118Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

17-42399113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399113
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399113
    reference: chr 17
allele count: 1
allele frequency: 8.565017044383918e-6
allele num: 116754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.347G>A
  hgvsp: ENSP00000366299.4:p.Arg116Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.908G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.455G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.278G>A
  hgvsp: ENSP00000444540.1:p.Arg93Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.323G>A
  hgvsp: ENSP00000467681.1:p.Arg108Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.323G>A
  hgvsp: ENSP00000225308.8:p.Arg108Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.434G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.50G>A
  hgvsp: ENSP00000466615.1:p.Arg17Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.323G>A
  hgvsp: ENSP00000465182.1:p.Arg108Lys
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.302G>A
  hgvsp: ENSP00000465554.1:p.Arg101Lys
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg116Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

17-42399117-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399117
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399117
    reference: chr 17
allele count: 5
allele frequency: 4.308413469823872e-5
allele num: 116052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.319G>A
  hgvsp: ENSP00000465182.1:p.Val107Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.298G>A
  hgvsp: ENSP00000465554.1:p.Val100Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.343G>A
  hgvsp: ENSP00000366299.4:p.Val115Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.904G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.319G>A
  hgvsp: ENSP00000225308.8:p.Val107Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.430G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-54G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.319G>A
  hgvsp: ENSP00000467681.1:p.Val107Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.274G>A
  hgvsp: ENSP00000444540.1:p.Val92Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.46G>A
  hgvsp: ENSP00000466615.1:p.Val16Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.451G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val115Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-42399118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399118
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399118
    reference: chr 17
allele count: 15
allele frequency: 1.2925908691381e-4
allele num: 116046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.297C>T
  hgvsp: ENST00000585636.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.903C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.318C>T
  hgvsp: ENST00000588049.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.318C>T
  hgvsp: ENST00000225308.8:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.318C>T
  hgvsp: ENST00000590194.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.45C>T
  hgvsp: ENST00000588767.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.429C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.273C>T
  hgvsp: ENST00000537904.2:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.342C>T
  hgvsp: ENST00000377095.5:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.450C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-55C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9796
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28374
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13080
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile114Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-42399119-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399119
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399119
    reference: chr 17
allele count: 1
allele frequency: 8.627234453723514e-6
allele num: 115912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.317T>C
  hgvsp: ENSP00000465182.1:p.Ile106Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.272T>C
  hgvsp: ENSP00000444540.1:p.Ile91Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-56T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.449T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.902T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.296T>C
  hgvsp: ENSP00000465554.1:p.Ile99Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.428T>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.317T>C
  hgvsp: ENSP00000467681.1:p.Ile106Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.317T>C
  hgvsp: ENSP00000225308.8:p.Ile106Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.341T>C
  hgvsp: ENSP00000366299.4:p.Ile114Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.44T>C
  hgvsp: ENSP00000466615.1:p.Ile15Thr
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile114Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

17-42399122-T-TTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399122
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399124
    reference: chr 17
allele count: 2
allele frequency: 1.730403183941859e-5
allele num: 115580
alternate allele: TTC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.312_313dupGA
  hgvsp: ENSP00000465182.1:p.Lys105ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.267_268dupGA
  hgvsp: ENSP00000444540.1:p.Lys90ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-61_-60dupGA
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.291_292dupGA
  hgvsp: ENSP00000465554.1:p.Lys98ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.444_445dupGA
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.39_40dupGA
  hgvsp: ENSP00000466615.1:p.Lys14ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.312_313dupGA
  hgvsp: ENSP00000467681.1:p.Lys105ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.312_313dupGA
  hgvsp: ENSP00000225308.8:p.Lys105ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.336_337dupGA
  hgvsp: ENSP00000366299.4:p.Lys113ArgfsTer4
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.897_898dupGA
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.423_424dupGA
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys113ArgfsTer4
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-42399126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399126
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399126
    reference: chr 17
allele count: 3
allele frequency: 2.617024617478235e-5
allele num: 114634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.310G>A
  hgvsp: ENSP00000225308.8:p.Val104Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.310G>A
  hgvsp: ENSP00000465182.1:p.Val104Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.442G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.895G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.421G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.265G>A
  hgvsp: ENSP00000444540.1:p.Val89Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.289G>A
  hgvsp: ENSP00000465554.1:p.Val97Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.37G>A
  hgvsp: ENSP00000466615.1:p.Val13Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.310G>A
  hgvsp: ENSP00000467681.1:p.Val104Met
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.334G>A
  hgvsp: ENSP00000366299.4:p.Val112Met
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val112Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

17-42399131-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399131
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399131
    reference: chr 17
allele count: 2
allele frequency: 1.758520029543137e-5
allele num: 113732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.305C>G
  hgvsp: ENSP00000225308.8:p.Ala102Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.305C>G
  hgvsp: ENSP00000465182.1:p.Ala102Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.305C>G
  hgvsp: ENSP00000467681.1:p.Ala102Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.260C>G
  hgvsp: ENSP00000444540.1:p.Ala87Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.329C>G
  hgvsp: ENSP00000366299.4:p.Ala110Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.32C>G
  hgvsp: ENSP00000466615.1:p.Ala11Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.437C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-68C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.284C>G
  hgvsp: ENSP00000465554.1:p.Ala95Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.416C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.890C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala110Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-42399132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399132
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399132
    reference: chr 17
allele count: 1
allele frequency: 8.823321804192843e-6
allele num: 113336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.889G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.436G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.304G>A
  hgvsp: ENSP00000465182.1:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.304G>A
  hgvsp: ENSP00000467681.1:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.328G>A
  hgvsp: ENSP00000366299.4:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.415G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.304G>A
  hgvsp: ENSP00000225308.8:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.259G>A
  hgvsp: ENSP00000444540.1:p.Ala87Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.283G>A
  hgvsp: ENSP00000465554.1:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.31G>A
  hgvsp: ENSP00000466615.1:p.Ala11Thr
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala110Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-42399134-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399134
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399134
    reference: chr 17
allele count: 1
allele frequency: 8.837825894829872e-6
allele num: 113150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.887A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.302A>G
  hgvsp: ENSP00000467681.1:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-71A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.257A>G
  hgvsp: ENSP00000444540.1:p.Asp86Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.281A>G
  hgvsp: ENSP00000465554.1:p.Asp94Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.302A>G
  hgvsp: ENSP00000225308.8:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.302A>G
  hgvsp: ENSP00000465182.1:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.413A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.29A>G
  hgvsp: ENSP00000466615.1:p.Asp10Gly
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.434A>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.326A>G
  hgvsp: ENSP00000366299.4:p.Asp109Gly
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp109Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

17-42399140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399140
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399140
    reference: chr 17
allele count: 1
allele frequency: 8.98020762240023e-6
allele num: 111356
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-5G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-5G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.325-5G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-42399149-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399149
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399149
    reference: chr 17
allele count: 1
allele frequency: 9.182399177257034e-6
allele num: 108904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-14G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-14G>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/17-42399151-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399151
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399151
    reference: chr 17
allele count: 219
allele frequency: 2.021563342318059e-3
allele num: 108332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-16G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-16G>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13669
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 18673
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

17-42399154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399154
    reference: chr 17
allele count: 3
allele frequency: 2.792984024131382e-5
allele num: 107412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-19C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-19C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4761
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/17-42399155-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399155
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399155
    reference: chr 17
allele count: 1
allele frequency: 9.346667912889055e-6
allele num: 106990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-20G>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-20G>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

17-42399162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399162
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399162
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 104470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-27C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-27C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-42399170-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399170
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399170
    reference: chr 17
allele count: 1
allele frequency: 9.773451396626205e-6
allele num: 102318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-35C>G
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-35C>G
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13128
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8515
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

17-42399171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399171
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399171
    reference: chr 17
allele count: 4
allele frequency: 3.93941184581142e-5
allele num: 101538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-36C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-36C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20536
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15664
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

17-42399172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399172
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399172
    reference: chr 17
allele count: 1
allele frequency: 9.874397661742633e-6
allele num: 101272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-37C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-37C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15621
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

17-42399179-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399179
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399179
    reference: chr 17
allele count: 2
allele frequency: 2.090606903183994e-5
allele num: 95666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.301-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.28-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.280-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.301-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.325-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.301-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.433-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.412-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.256-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.886-44C>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-44C>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15776
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5923
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

17-42399736-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399736
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399736
    reference: chr 17
allele count: 12
allele frequency: 1.002238332275415e-4
allele num: 119732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.300+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.255+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.885+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.411+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.432+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.279+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.300+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.300+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.324+51G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-601G>C
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.27+51G>C
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9500
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

17-42399736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399736
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399736
    reference: chr 17
allele count: 7
allele frequency: 5.846390271606588e-5
allele num: 119732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-601G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.279+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.300+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.885+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.432+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.411+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.324+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.255+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.300+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.27+51G>A
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.300+51G>A
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9500
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-42399737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42399737
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 42399737
    reference: chr 17
allele count: 2
allele frequency: 1.668752607425949e-5
allele num: 119850
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000366299
  ensembl transcript: ENST00000377095
  gene symbol: SLC25A39
  hgvsc: ENST00000377095.5:c.324+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000591006
  gene symbol: SLC25A39
  hgvsc: ENST00000591006.1:n.885+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000588315
  gene symbol: SLC25A39
  hgvsc: ENST00000588315.1:n.411+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000467681
  ensembl transcript: ENST00000590194
  gene symbol: SLC25A39
  hgvsc: ENST00000590194.1:c.300+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465554
  ensembl transcript: ENST00000585636
  gene symbol: SLC25A39
  hgvsc: ENST00000585636.1:c.279+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000225308
  ensembl transcript: ENST00000225308
  gene symbol: SLC25A39
  hgvsc: ENST00000225308.8:c.300+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466676
  ensembl transcript: ENST00000586016
  gene symbol: SLC25A39
  hgvsc: ENST00000586016.1:c.-72-602C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000444540
  ensembl transcript: ENST00000537904
  gene symbol: SLC25A39
  hgvsc: ENST00000537904.2:c.255+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000465182
  ensembl transcript: ENST00000588049
  gene symbol: SLC25A39
  hgvsc: ENST00000588049.1:c.300+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl protein: ENSP00000466615
  ensembl transcript: ENST00000588767
  gene symbol: SLC25A39
  hgvsc: ENST00000588767.1:c.27+50C>T
  variant of: http://identifiers.org/hgnc/24279
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000013306
  ensembl transcript: ENST00000585695
  gene symbol: SLC25A39
  hgvsc: ENST00000585695.1:n.432+50C>T
  variant of: http://identifiers.org/hgnc/24279
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24841
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 12037
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10738
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512767759893501e-5
allele num: 66104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.795e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

MQ
type: SiteQuality
SIO_000300: 5.885e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.233e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 2.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

DP
type: SiteQuality
SIO_000300: 2.239028e6

GenotypeDepth
all individuals: 3377
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8843
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18321
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6782
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02489488490275e-5
allele num: 66118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.237812e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.006e0

QD
type: SiteQuality
SIO_000300: 1.672e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeDepth
all individuals: 11849
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18318
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
SIO_000300: 4.344e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 2.235416e6

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4598
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66084
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

DP
type: SiteQuality
SIO_000300: 2.235648e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.885e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeDepth
all individuals: 328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
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GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
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GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
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GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18317
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025901718712176e-5
allele num: 66096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.235259e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

FS
type: SiteQuality
SIO_000300: 3.507e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeDepth
all individuals: 6808
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4637
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18317
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

DP
type: SiteQuality
SIO_000300: 2.233078e6

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 5.541e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeDepth
all individuals: 328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 760
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variant carriers: 0

GenotypeQuality
all individuals: 3752
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variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 18316
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 266
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GenotypeQuality
all individuals: 6643
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GenotypeQuality
all individuals: 2515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4629
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026451183342413e-5
allele num: 66084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.475e0

DP
type: SiteQuality
SIO_000300: 2.231271e6

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 6623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 4180
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 4622
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 18316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.231173e6

FS
type: SiteQuality
SIO_000300: 1.271e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.579e0

QD
type: SiteQuality
SIO_000300: 1.617e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

GenotypeDepth
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 4631
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variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219066195294405e-4
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.519e1

FS
type: SiteQuality
SIO_000300: 7.712e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.324e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.231031e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.446e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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ClippingRankSum
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SIO_000300: 1.4e-1

BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.032e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 264
bin: 2.75e1
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GenotypeQuality
all individuals: 4620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18312
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.955e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 7.542e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

DP
type: SiteQuality
SIO_000300: 2.229936e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 853
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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DP
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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SIO_000300: 2.28e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.120700208103807e-5
allele num: 16338
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66036
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Latino
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InbreedingCoeff
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DP
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FS
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -2.117e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.515013786625458e-5
allele num: 66006
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
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Latino
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allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
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South Asian
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allele count: 1
allele frequency: 6.145526057030482e-5
allele num: 16272
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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FS
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514463122822959e-5
allele num: 66030
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

QD
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

South Asian
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 5.201109570041609e-4
allele num: 11536
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

FS
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 3.031405359524676e-5
allele num: 65976
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.841e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

FS
type: SiteQuality
SIO_000300: 1.871e0

QD
type: SiteQuality
SIO_000300: 1.023e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

DP
type: SiteQuality
SIO_000300: 2.19556e6

GenotypeQuality
all individuals: 6263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 12225
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515656734062869e-5
allele num: 65978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.841e1

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

DP
type: SiteQuality
SIO_000300: 2.19556e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

FS
type: SiteQuality
SIO_000300: 1.871e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 2.192188e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.462e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 39

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.4375e-3
allele num: 16000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-5
allele num: 65920
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.214e1

FS
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 2.187646e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.18703e6

VQSLOD
type: SiteQuality
SIO_000300: -2.678e-1

FS
type: SiteQuality
SIO_000300: 9.617000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.226e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.139e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65850
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.658e1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

DP
type: SiteQuality
SIO_000300: 2.187754e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

FS
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SIO_000300: 4.259e0

QD
type: SiteQuality
SIO_000300: 9.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.061e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

BaseQRankSum
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SIO_000300: 2.98e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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QD
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
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SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.634158e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.777082518576456e-5
allele num: 10228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

MQ
type: SiteQuality
SIO_000300: 5.435e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65468
num of homozygotes: 0

East Asian
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allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.19e0

MQ
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SIO_000300: 5.969e1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 4.543e0

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

East Asian
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allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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QD
type: SiteQuality
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ClippingRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

BaseQRankSum
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FS
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SIO_000300: 4.543e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8624
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ClippingRankSum
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SIO_000300: -2.605e0

MQ
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DP
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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FS
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SIO_000300: 1.967e0

ReadPosRankSum
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SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6422
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

MQ
type: SiteQuality
SIO_000300: 5.885e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.635556e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.359e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.587576841912102e-5
allele num: 65394
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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Other
type: Population
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allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 6.35e-1

DP
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SIO_000300: 1.635938e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.959247648902821e-4
allele num: 10208
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65328
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Other
type: Population
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num of homozygotes: 0

Latino
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MQ
type: SiteQuality
SIO_000300: 5.851e1

InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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African
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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allele frequency: 6.490977541217708e-5
allele num: 15406
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MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530643482520051e-5
allele num: 65332
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 8.48e-1

ReadPosRankSum
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SIO_000300: 9.31e-1

DP
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SIO_000300: 1.640279e6

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 6.089074460681977e-4
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 3.985162931853714e-4
allele num: 65242
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Other
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allele num: 864
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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South Asian
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African
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East Asian
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -5.12e-1

VQSLOD
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MQ
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SIO_000300: 5.908e1

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 1.535107918086642e-5
allele num: 65142
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -8.6e-1

ClippingRankSum
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SIO_000300: 1.81e-1

MQRankSum
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InbreedingCoeff
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QD
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MQ
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SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.728e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65142
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Other
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European (Finnish)
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 1.273560876209883e-4
allele num: 15704
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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ClippingRankSum
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DP
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65066
num of homozygotes: 0

South Asian
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allele num: 15710
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European (Finnish)
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Latino
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African
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East Asian
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Other
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InbreedingCoeff
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DP
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MQ
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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allele num: 15700
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.537751806858373e-5
allele num: 65030
num of homozygotes: 0

East Asian
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allele num: 8620
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Other
type: Population
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Latino
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ReadPosRankSum
type: SiteQuality
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538508877196221e-5
allele num: 64998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

DP
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.28e-1

FS
type: SiteQuality
SIO_000300: 3.285e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
all individuals: 2091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.918666931164451e-5
allele num: 10082
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15764
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.630088e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
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SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

QD
type: SiteQuality
SIO_000300: 1.271e1

VQSLOD
type: SiteQuality
SIO_000300: -3.245e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64826
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.924573243350536e-5
allele num: 10076
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.233e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

QD
type: SiteQuality
SIO_000300: 1.564e1

FS
type: SiteQuality
SIO_000300: 2.161e0

MQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

DP
type: SiteQuality
SIO_000300: 1.626577e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.372673973999491e-5
allele num: 15692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619047e6

MQ
type: SiteQuality
SIO_000300: 5.849e1

QD
type: SiteQuality
SIO_000300: 9.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.739e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 835
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variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548419064135518e-5
allele num: 64582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.198e1

ReadPosRankSum
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SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.613035e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.420133538777607e-5
allele num: 15576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.3e-3

BaseQRankSum
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MQ
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ClippingRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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QD
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SIO_000300: 1.278e1

ReadPosRankSum
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SIO_000300: 1.91e-1

VQSLOD
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SIO_000300: 4.6e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15472
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.775252973548731e-4
allele num: 11266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117498519188203e-5
allele num: 64154
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
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MQ
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InbreedingCoeff
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SIO_000300: -1.5e-3

QD
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MQRankSum
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ClippingRankSum
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DP
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SIO_000300: 1.585194e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 213
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.402874333634691e-4
allele num: 64154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.876264867743653e-5
allele num: 11266
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.231226573607341e-4
allele num: 15474
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Other
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allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: 1.3e-3

MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 1.584115e6

BaseQRankSum
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SIO_000300: -1.864e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.560305819940709e-5
allele num: 64090
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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MQRankSum
type: SiteQuality
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.128421711246676e-5
allele num: 63930
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
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MQRankSum
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MQ
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QD
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VQSLOD
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FS
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DP
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BaseQRankSum
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SIO_000300: 1.26e0

ReadPosRankSum
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SIO_000300: 1.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.984725965858041e-5
allele num: 11130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.574456025443209e-5
allele num: 63514
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8484
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South Asian
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allele count: 1
allele frequency: 6.593696426216537e-5
allele num: 15166
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.6e-3

FS
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.314e1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.17047652262135e-5
allele num: 63082
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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MQRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 9.04e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.589269253997012e-5
allele num: 62922
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10998
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South Asian
type: Population
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num of homozygotes: 0

Other
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VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

QD
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MQ
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FS
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 62834
num of homozygotes: 0

African
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East Asian
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European (Finnish)
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South Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 62014
num of homozygotes: 0

Latino
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Other
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South Asian
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -1.294e0

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.645169781521453e-5
allele num: 60784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13940
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.908e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.291e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.331649e6

GenotypeQuality
all individuals: 207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1548
bin: 9.75e1
variant carriers: 220

GenotypeQuality
all individuals: 862
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5128
bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 471
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variant carriers: 0

GenotypeQuality
all individuals: 25504
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 504
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 84
allele frequency: 1.592718998862343e-2
allele num: 5274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.122691572914456e-4
allele num: 9422
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.712082262210797e-3
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 127
allele frequency: 2.098479841374752e-3
allele num: 60520
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 1.302486e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
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variant carriers: 1

GenotypeQuality
all individuals: 3992
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variant carriers: 0

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 1139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.990518015770037e-5
allele num: 60114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.178e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.260196e6

GenotypeQuality
all individuals: 525
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22193
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variant carriers: 0

GenotypeQuality
all individuals: 459
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variant carriers: 0

GenotypeQuality
all individuals: 4820
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.072271070126528e-4
allele num: 9326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.031e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.242773e6

QD
type: SiteQuality
SIO_000300: 1.053e1

MQ
type: SiteQuality
SIO_000300: 5.871e1

GenotypeQuality
all individuals: 14452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
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variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
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variant carriers: 0

GenotypeQuality
all individuals: 1278
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variant carriers: 0

GenotypeQuality
all individuals: 16012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7419
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12986
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

QD
type: SiteQuality
SIO_000300: 5.4e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.469000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 1.109889e6

GenotypeQuality
all individuals: 631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
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variant carriers: 0

GenotypeQuality
all individuals: 840
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variant carriers: 0

GenotypeQuality
all individuals: 5694
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variant carriers: 0

GenotypeQuality
all individuals: 856
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variant carriers: 0

GenotypeQuality
all individuals: 6002
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10857
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variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 356
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variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.733643077563191e-5
allele num: 57682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 1.049582e6

QD
type: SiteQuality
SIO_000300: 7.71e0

GenotypeQuality
all individuals: 1093
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 324
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
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variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 593
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.114827201783724e-4
allele num: 8970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.239625541427972e-5
allele num: 57256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12440
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.033259e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
all individuals: 1052
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2106
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variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
all individuals: 602
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GenotypeQuality
all individuals: 6277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 8.25e1
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GenotypeQuality
all individuals: 1314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.071025020177563e-5
allele num: 12390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57146
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.026725e6

QD
type: SiteQuality
SIO_000300: 5.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.652e0

MQ
type: SiteQuality
SIO_000300: 5.685e1

VQSLOD
type: SiteQuality
SIO_000300: -1.688e0

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3057
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 740
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.682969946965233e-5
allele num: 54304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.52e-1

DP
type: SiteQuality
SIO_000300: 9.80573e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 704
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 12
allele frequency: 1.045478306325144e-3
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.466e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 1.616031e6

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

FS
type: SiteQuality
SIO_000300: 1.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
all individuals: 704
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1888
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.049431281066081e-5
allele num: 65586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.484927687750479e-4
allele num: 11478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

QD
type: SiteQuality
SIO_000300: 1.466e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

DP
type: SiteQuality
SIO_000300: 1.616031e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
all individuals: 34721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 7.75e1
variant carriers: 0