16-1004262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004262
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004262
    reference: chr 16
allele count: 2
allele frequency: 1.200624324648817e-4
allele num: 16658
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16526C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-12C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+95C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+95C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18773
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

16-1004265-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004265
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004265
    reference: chr 16
allele count: 2
allele frequency: 1.140250855188141e-4
allele num: 17540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-15G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+88G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+92G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16523G>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-1004265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004265
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004265
    reference: chr 16
allele count: 1
allele frequency: 5.701254275940707e-5
allele num: 17540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16523G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-15G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+92G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+88G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-1004266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004266
    reference: chr 16
allele count: 7
allele frequency: 3.810560696788242e-4
allele num: 18370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16522C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+87C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-16C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+91C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+91C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23258
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

16-1004268-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004268
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004268
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-18G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16520G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+85G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+89G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+89G>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25096
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-1004273-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004273
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004273
    reference: chr 16
allele count: 2
allele frequency: 9.548362455838824e-5
allele num: 20946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+80G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16515G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-23G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+84G>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+84G>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-1004277-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004277
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004277
    reference: chr 16
allele count: 1
allele frequency: 4.515895953757225e-5
allele num: 22144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+76G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-27G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16511G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+80G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+80G>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30557
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-1004280-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004280
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004280
    reference: chr 16
allele count: 3
allele frequency: 1.274101758260426e-4
allele num: 23546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-30T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16508T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+77T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+73T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+77T>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-1004284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004284
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004284
    reference: chr 16
allele count: 2
allele frequency: 7.996801279488205e-5
allele num: 25010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-34G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16504G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+73G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+69G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

16-1004287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004287
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004287
    reference: chr 16
allele count: 2
allele frequency: 7.456009543692216e-5
allele num: 26824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-37C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+70C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16501C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+66C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33870
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-1004294-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004294
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004294
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 29996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16494A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-44A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+63A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+59A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+63A>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35150
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

16-1004299-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004299
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004299
    reference: chr 16
allele count: 1
allele frequency: 3.02535245356084e-5
allele num: 33054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16489A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+54A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+58A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.506-49A>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-1004307-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004307
    reference: chr 16
allele count: 2
allele frequency: 2.448759703210324e-5
allele num: 81674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16481G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+48G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+50G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+46G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+50G>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18977
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16117
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-1004307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004307
    reference: chr 16
allele count: 2
allele frequency: 2.448759703210324e-5
allele num: 81674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+48G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+46G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+50G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16481G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18977
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

16-1004308-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004308
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004308
    reference: chr 16
allele count: 5
allele frequency: 6.092063259984891e-5
allele num: 82074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16480A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+45A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+47A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+49A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+49A>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18994
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

16-1004310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004310
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004310
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 81890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+45T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16478T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+47T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+47T>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-1004314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004314
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004314
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 82382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+39T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16474T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+41T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+43T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+43T>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

16-1004317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004317
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004317
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 81982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16471C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+36C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+38C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+40C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+40C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16075
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

16-1004321-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004321
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004321
    reference: chr 16
allele count: 2
allele frequency: 2.406912653139818e-5
allele num: 83094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16467C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+34C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+32C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+36C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+36C>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18269
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-1004330-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004330
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004330
    reference: chr 16
allele count: 10
allele frequency: 1.171042461999672e-4
allele num: 85394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+25A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16458A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+23A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+27A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+27A>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12442
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16051
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

16-1004332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004332
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004332
    reference: chr 16
allele count: 78
allele frequency: 9.1006673822747e-4
allele num: 85708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16456G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+23G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+25G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+25G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13197
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15528
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-1004333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004333
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004333
    reference: chr 16
allele count: 14
allele frequency: 1.616180273365349e-4
allele num: 86624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16455C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+24C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+22C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+24C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-1004334-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004334
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004333
    reference: chr 16
allele count: 1
allele frequency: 1.1441647597254e-5
allele num: 87400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+20delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+18delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+22delG
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16453delG
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: AC
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-1004336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004336
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004336
    reference: chr 16
allele count: 2
allele frequency: 2.273398958783277e-5
allele num: 87974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+17G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+19G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16452G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+21G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+21G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-1004337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004337
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004337
    reference: chr 16
allele count: 92
allele frequency: 1.037133903005434e-3
allele num: 88706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16451C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+16C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+18C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+20C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+20C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14519
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16770
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

16-1004347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004347
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004347
    reference: chr 16
allele count: 1
allele frequency: 1.067121972041404e-5
allele num: 93710
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.505+8A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-138+6A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176+10A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16441A>G
  variant of: http://identifiers.org/hgnc/14154
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-138+6A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

16-1004357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004357
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004357
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 98236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.503G>A
  hgvsp: ENSP00000455833.1:p.Trp168Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.505G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.482G>A
  hgvsp: ENSP00000446322.1:p.Trp161Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.486G>A
  hgvsp: ENSP00000456631.1:p.Trp163Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-142G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.176G>A
  hgvsp: ENSP00000454672.1:p.Trp59Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.503G>A
  hgvsp: ENSP00000262301.11:p.Trp168Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.433G>A
  hgvsp: ENSP00000457725.1:p.Trp145Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.503G>A
  hgvsp: ENSP00000382737.2:p.Trp168Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.386G>A
  hgvsp: ENSP00000455715.1:p.Trp129Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.176G>A
  hgvsp: ENSP00000443820.2:p.Trp59Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16431G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp168Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-1004361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004361
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004361
    reference: chr 16
allele count: 1
allele frequency: 1.00076057803931e-5
allele num: 99924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.172G>A
  hgvsp: ENSP00000454672.1:p.Val58Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.429G>A
  hgvsp: ENSP00000457725.1:p.Val144Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.499G>A
  hgvsp: ENSP00000262301.11:p.Val167Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.501G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.382G>A
  hgvsp: ENSP00000455715.1:p.Val128Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.482G>A
  hgvsp: ENSP00000456631.1:p.Val162Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-146G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.499G>A
  hgvsp: ENSP00000382737.2:p.Val167Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.478G>A
  hgvsp: ENSP00000446322.1:p.Val160Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.499G>A
  hgvsp: ENSP00000455833.1:p.Val167Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16427G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.172G>A
  hgvsp: ENSP00000443820.2:p.Val58Ile
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val167Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

16-1004363-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004363
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004363
    reference: chr 16
allele count: 1
allele frequency: 9.931078316483604e-6
allele num: 100694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16425A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.170A>T
  hgvsp: ENSP00000454672.1:p.His57Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.480A>T
  hgvsp: ENSP00000456631.1:p.His161Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.497A>T
  hgvsp: ENSP00000455833.1:p.His166Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.427A>T
  hgvsp: ENSP00000457725.1:p.His143Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.476A>T
  hgvsp: ENSP00000446322.1:p.His159Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.497A>T
  hgvsp: ENSP00000382737.2:p.His166Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.497A>T
  hgvsp: ENSP00000262301.11:p.His166Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.170A>T
  hgvsp: ENSP00000443820.2:p.His57Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-148A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.499A>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.380A>T
  hgvsp: ENSP00000455715.1:p.His127Leu
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His166Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

16-1004369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004369
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004369
    reference: chr 16
allele count: 724
allele frequency: 7.013600960979579e-3
allele num: 103228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.421T>C
  hgvsp: ENSP00000457725.1:p.Val141Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.164T>C
  hgvsp: ENSP00000454672.1:p.Val55Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16419T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.491T>C
  hgvsp: ENSP00000262301.11:p.Val164Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.474T>C
  hgvsp: ENSP00000456631.1:p.Val159Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.493T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.470T>C
  hgvsp: ENSP00000446322.1:p.Val157Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.164T>C
  hgvsp: ENSP00000443820.2:p.Val55Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.491T>C
  hgvsp: ENSP00000455833.1:p.Val164Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.374T>C
  hgvsp: ENSP00000455715.1:p.Val125Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.491T>C
  hgvsp: ENSP00000382737.2:p.Val164Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-154T>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 1.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29388
  bin: 2.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 2.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Val164Ala
num of homozygotes: 28
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

16-1004372-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004372
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004372
    reference: chr 16
allele count: 4
allele frequency: 3.840983291722681e-5
allele num: 104140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.488A>G
  hgvsp: ENSP00000455833.1:p.Asn163Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-157A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.467A>G
  hgvsp: ENSP00000446322.1:p.Asn156Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.488A>G
  hgvsp: ENSP00000262301.11:p.Asn163Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.161A>G
  hgvsp: ENSP00000454672.1:p.Asn54Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.488A>G
  hgvsp: ENSP00000382737.2:p.Asn163Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.418A>G
  hgvsp: ENSP00000457725.1:p.Asn140Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.490A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.161A>G
  hgvsp: ENSP00000443820.2:p.Asn54Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.371A>G
  hgvsp: ENSP00000455715.1:p.Asn124Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16416A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.471A>G
  hgvsp: ENSP00000456631.1:p.Asn158Ser
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30124
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn163Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

16-1004375-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004375
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004375
    reference: chr 16
allele count: 3
allele frequency: 2.853718395068775e-5
allele num: 105126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.464T>C
  hgvsp: ENSP00000446322.1:p.Val155Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.158T>C
  hgvsp: ENSP00000454672.1:p.Val53Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.415T>C
  hgvsp: ENSP00000457725.1:p.Val139Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.485T>C
  hgvsp: ENSP00000382737.2:p.Val162Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.487T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.368T>C
  hgvsp: ENSP00000455715.1:p.Val123Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.485T>C
  hgvsp: ENSP00000262301.11:p.Val162Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.468T>C
  hgvsp: ENSP00000456631.1:p.Val157Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.485T>C
  hgvsp: ENSP00000455833.1:p.Val162Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.158T>C
  hgvsp: ENSP00000443820.2:p.Val53Ala
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-160T>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16413T>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val162Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-1004382-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004382
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004382
    reference: chr 16
allele count: 1
allele frequency: 9.357338024478796e-6
allele num: 106868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.361T>A
  hgvsp: ENSP00000455715.1:p.Ser121Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.457T>A
  hgvsp: ENSP00000446322.1:p.Ser153Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-167T>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.151T>A
  hgvsp: ENSP00000454672.1:p.Ser51Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.461T>A
  hgvsp: ENSP00000456631.1:p.Ser155Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16406T>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.478T>A
  hgvsp: ENSP00000262301.11:p.Ser160Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.480T>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.478T>A
  hgvsp: ENSP00000382737.2:p.Ser160Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.478T>A
  hgvsp: ENSP00000455833.1:p.Ser160Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.408T>A
  hgvsp: ENSP00000457725.1:p.Ser137Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.151T>A
  hgvsp: ENSP00000443820.2:p.Ser51Thr
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser160Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-1004385-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004385
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004385
    reference: chr 16
allele count: 61
allele frequency: 5.676847767416755e-4
allele num: 107454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.148A>G
  hgvsp: ENSP00000443820.2:p.Met50Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.148A>G
  hgvsp: ENSP00000454672.1:p.Met50Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.358A>G
  hgvsp: ENSP00000455715.1:p.Met120Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.475A>G
  hgvsp: ENSP00000455833.1:p.Met159Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.405A>G
  hgvsp: ENSP00000457725.1:p.Met136Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.475A>G
  hgvsp: ENSP00000262301.11:p.Met159Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16403A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.477A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-170A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.454A>G
  hgvsp: ENSP00000446322.1:p.Met152Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.475A>G
  hgvsp: ENSP00000382737.2:p.Met159Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.458A>G
  hgvsp: ENSP00000456631.1:p.Met154Val
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met159Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

16-1004394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004394
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004394
    reference: chr 16
allele count: 1
allele frequency: 9.179701843284131e-6
allele num: 108936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.349G>A
  hgvsp: ENSP00000455715.1:p.Gly117Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.139G>A
  hgvsp: ENSP00000454672.1:p.Gly47Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.449G>A
  hgvsp: ENSP00000456631.1:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.466G>A
  hgvsp: ENSP00000455833.1:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16394G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.466G>A
  hgvsp: ENSP00000382737.2:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.466G>A
  hgvsp: ENSP00000262301.11:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-179G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.445G>A
  hgvsp: ENSP00000446322.1:p.Gly149Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.396G>A
  hgvsp: ENSP00000457725.1:p.Gly133Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.139G>A
  hgvsp: ENSP00000443820.2:p.Gly47Ser
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.468G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly156Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

16-1004400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004400
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004400
    reference: chr 16
allele count: 1
allele frequency: 9.128418592762991e-6
allele num: 109548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.439C>T
  hgvsp: ENST00000539379.1:c.439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.133C>T
  hgvsp: ENST00000570014.1:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.390C>T
  hgvsp: ENST00000567595.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.460C>T
  hgvsp: ENST00000262301.11:c.460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-185C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.460C>T
  hgvsp: ENST00000399843.2:c.460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.443C>T
  hgvsp: ENST00000568964.1:c.443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.460C>T
  hgvsp: ENST00000562226.1:c.460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16388C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.343C>T
  hgvsp: ENST00000562380.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.462C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.133C>T
  hgvsp: ENST00000545827.2:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu154Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-1004400-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004400
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004400
    reference: chr 16
allele count: 1
allele frequency: 9.128418592762991e-6
allele num: 109548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.343C>G
  hgvsp: ENSP00000455715.1:p.Leu115Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.460C>G
  hgvsp: ENSP00000455833.1:p.Leu154Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.460C>G
  hgvsp: ENSP00000262301.11:p.Leu154Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.460C>G
  hgvsp: ENSP00000382737.2:p.Leu154Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.462C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.390C>G
  hgvsp: ENSP00000457725.1:p.Leu131Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.133C>G
  hgvsp: ENSP00000443820.2:p.Leu45Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.439C>G
  hgvsp: ENSP00000446322.1:p.Leu147Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.133C>G
  hgvsp: ENSP00000454672.1:p.Leu45Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-185C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.443C>G
  hgvsp: ENSP00000456631.1:p.Leu149Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16388C>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu154Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-1004401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004401
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004401
    reference: chr 16
allele count: 1
allele frequency: 9.115604091083115e-6
allele num: 109702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.459C>T
  hgvsp: ENST00000399843.2:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.438C>T
  hgvsp: ENST00000539379.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.461C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-186C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.342C>T
  hgvsp: ENST00000562380.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.132C>T
  hgvsp: ENST00000570014.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.442C>T
  hgvsp: ENST00000568964.1:c.442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16387C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.132C>T
  hgvsp: ENST00000545827.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.459C>T
  hgvsp: ENST00000562226.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.459C>T
  hgvsp: ENST00000262301.11:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.389C>T
  hgvsp: ENST00000567595.1:c.389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala153Ala
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-1004402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004402
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004402
    reference: chr 16
allele count: 1
allele frequency: 9.152145262849612e-6
allele num: 109264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.131C>T
  hgvsp: ENSP00000443820.2:p.Ala44Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-187C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.458C>T
  hgvsp: ENSP00000262301.11:p.Ala153Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.458C>T
  hgvsp: ENSP00000382737.2:p.Ala153Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.388C>T
  hgvsp: ENSP00000457725.1:p.Ala130Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.458C>T
  hgvsp: ENSP00000455833.1:p.Ala153Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.131C>T
  hgvsp: ENSP00000454672.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.437C>T
  hgvsp: ENSP00000446322.1:p.Ala146Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16386C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.441C>T
  hgvsp: ENSP00000456631.1:p.Ala148Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.460C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.341C>T
  hgvsp: ENSP00000455715.1:p.Ala114Val
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala153Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

16-1004406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004406
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004406
    reference: chr 16
allele count: 1
allele frequency: 9.081662307468759e-6
allele num: 110112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.454G>A
  hgvsp: ENSP00000262301.11:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.454G>A
  hgvsp: ENSP00000455833.1:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.456G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.384G>A
  hgvsp: ENSP00000457725.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.337G>A
  hgvsp: ENSP00000455715.1:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.454G>A
  hgvsp: ENSP00000382737.2:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.437G>A
  hgvsp: ENSP00000456631.1:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.433G>A
  hgvsp: ENSP00000446322.1:p.Ala145Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.127G>A
  hgvsp: ENSP00000443820.2:p.Ala43Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-191G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.127G>A
  hgvsp: ENSP00000454672.1:p.Ala43Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16382G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala152Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

16-1004415-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004415
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004415
    reference: chr 16
allele count: 1
allele frequency: 9.038812661568777e-6
allele num: 110634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-200C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.445C>G
  hgvsp: ENSP00000455833.1:p.Leu149Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.328C>G
  hgvsp: ENSP00000455715.1:p.Leu110Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.424C>G
  hgvsp: ENSP00000446322.1:p.Leu142Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.447C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.445C>G
  hgvsp: ENSP00000382737.2:p.Leu149Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16373C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.445C>G
  hgvsp: ENSP00000262301.11:p.Leu149Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.118C>G
  hgvsp: ENSP00000454672.1:p.Leu40Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.375C>G
  hgvsp: ENSP00000457725.1:p.Leu126Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.118C>G
  hgvsp: ENSP00000443820.2:p.Leu40Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.428C>G
  hgvsp: ENSP00000456631.1:p.Leu144Val
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu149Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

16-1004416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004416
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004416
    reference: chr 16
allele count: 1
allele frequency: 9.037342298376894e-6
allele num: 110652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.117G>A
  hgvsp: ENSP00000443820.2:p.Met39Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.423G>A
  hgvsp: ENSP00000446322.1:p.Met141Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.444G>A
  hgvsp: ENSP00000262301.11:p.Met148Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.444G>A
  hgvsp: ENSP00000455833.1:p.Met148Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.427G>A
  hgvsp: ENSP00000456631.1:p.Met143Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.446G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.327G>A
  hgvsp: ENSP00000455715.1:p.Met109Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.374G>A
  hgvsp: ENSP00000457725.1:p.Met125Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.444G>A
  hgvsp: ENSP00000382737.2:p.Met148Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.117G>A
  hgvsp: ENSP00000454672.1:p.Met39Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-201G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16372G>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met148Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

16-1004418-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004418
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004418
    reference: chr 16
allele count: 2
allele frequency: 1.805054151624549e-5
allele num: 110800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.421A>G
  hgvsp: ENSP00000446322.1:p.Met141Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-203A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.442A>G
  hgvsp: ENSP00000382737.2:p.Met148Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.372A>G
  hgvsp: ENSP00000457725.1:p.Met125Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.442A>G
  hgvsp: ENSP00000455833.1:p.Met148Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.325A>G
  hgvsp: ENSP00000455715.1:p.Met109Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.115A>G
  hgvsp: ENSP00000454672.1:p.Met39Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.442A>G
  hgvsp: ENSP00000262301.11:p.Met148Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.425A>G
  hgvsp: ENSP00000456631.1:p.Met143Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.444A>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.115A>G
  hgvsp: ENSP00000443820.2:p.Met39Val
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16370A>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28554
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met148Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

16-1004419-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004419
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004419
    reference: chr 16
allele count: 2
allele frequency: 1.804695818519789e-5
allele num: 110822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.114C>G
  hgvsp: ENSP00000454672.1:p.Asn38Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16369C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.441C>G
  hgvsp: ENSP00000262301.11:p.Asn147Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.424C>G
  hgvsp: ENSP00000456631.1:p.Asn142Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.441C>G
  hgvsp: ENSP00000382737.2:p.Asn147Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.420C>G
  hgvsp: ENSP00000446322.1:p.Asn140Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.441C>G
  hgvsp: ENSP00000455833.1:p.Asn147Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.324C>G
  hgvsp: ENSP00000455715.1:p.Asn108Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-204C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.371C>G
  hgvsp: ENSP00000457725.1:p.Asn124Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.114C>G
  hgvsp: ENSP00000443820.2:p.Asn38Lys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.443C>G
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn147Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-1004424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004424
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004424
    reference: chr 16
allele count: 1
allele frequency: 9.027715085311908e-6
allele num: 110770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.436G>A
  hgvsp: ENSP00000455833.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.438G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-209G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.366G>A
  hgvsp: ENSP00000457725.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.436G>A
  hgvsp: ENSP00000382737.2:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.415G>A
  hgvsp: ENSP00000446322.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.436G>A
  hgvsp: ENSP00000262301.11:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.109G>A
  hgvsp: ENSP00000454672.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.419G>A
  hgvsp: ENSP00000456631.1:p.Ala141Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16364G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.109G>A
  hgvsp: ENSP00000443820.2:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.319G>A
  hgvsp: ENSP00000455715.1:p.Ala107Thr
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27528
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala146Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

16-1004425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004425
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004425
    reference: chr 16
allele count: 26
allele frequency: 2.349454203715752e-4
allele num: 110664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-210C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.435C>T
  hgvsp: ENST00000562226.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.318C>T
  hgvsp: ENST00000562380.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16363C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.108C>T
  hgvsp: ENST00000570014.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.435C>T
  hgvsp: ENST00000399843.2:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.435C>T
  hgvsp: ENST00000262301.11:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.414C>T
  hgvsp: ENST00000539379.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.418C>T
  hgvsp: ENST00000568964.1:c.418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.365C>T
  hgvsp: ENST00000567595.1:c.365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.437C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.108C>T
  hgvsp: ENST00000545827.2:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27221
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys145Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

16-1004426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004426
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004426
    reference: chr 16
allele count: 2
allele frequency: 1.8001800180018e-5
allele num: 111100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.413G>A
  hgvsp: ENSP00000446322.1:p.Cys138Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-211G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.434G>A
  hgvsp: ENSP00000382737.2:p.Cys145Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.317G>A
  hgvsp: ENSP00000455715.1:p.Cys106Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.434G>A
  hgvsp: ENSP00000455833.1:p.Cys145Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.107G>A
  hgvsp: ENSP00000443820.2:p.Cys36Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.436G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.417G>A
  hgvsp: ENSP00000456631.1:p.Cys140Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.107G>A
  hgvsp: ENSP00000454672.1:p.Cys36Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.434G>A
  hgvsp: ENSP00000262301.11:p.Cys145Tyr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16362G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.364G>A
  hgvsp: ENSP00000457725.1:p.Cys122Tyr
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys145Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-1004431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004431
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004431
    reference: chr 16
allele count: 7
allele frequency: 6.295530173576761e-5
allele num: 111190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.429G>A
  hgvsp: ENST00000562226.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.359G>A
  hgvsp: ENST00000567595.1:c.359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16357G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.408G>A
  hgvsp: ENST00000539379.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.429G>A
  hgvsp: ENST00000262301.11:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-216G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.431G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.412G>A
  hgvsp: ENST00000568964.1:c.412G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.429G>A
  hgvsp: ENST00000399843.2:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.102G>A
  hgvsp: ENST00000570014.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.102G>A
  hgvsp: ENST00000545827.2:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.312G>A
  hgvsp: ENST00000562380.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10529
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26725
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr143Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

16-1004432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004432
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004432
    reference: chr 16
allele count: 21
allele frequency: 1.886758548813139e-4
allele num: 111302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.428C>T
  hgvsp: ENSP00000382737.2:p.Thr143Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.430C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.428C>T
  hgvsp: ENSP00000262301.11:p.Thr143Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.101C>T
  hgvsp: ENSP00000454672.1:p.Thr34Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.311C>T
  hgvsp: ENSP00000455715.1:p.Thr104Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16356C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-217C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.411C>T
  hgvsp: ENSP00000456631.1:p.Thr138Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.428C>T
  hgvsp: ENSP00000455833.1:p.Thr143Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.407C>T
  hgvsp: ENSP00000446322.1:p.Thr136Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.358C>T
  hgvsp: ENSP00000457725.1:p.Thr120Met
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.101C>T
  hgvsp: ENSP00000443820.2:p.Thr34Met
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10621
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26616
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr143Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-1004434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004434
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004434
    reference: chr 16
allele count: 1
allele frequency: 8.974404996948703e-6
allele num: 111428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.309C>T
  hgvsp: ENST00000562380.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.409C>T
  hgvsp: ENST00000568964.1:c.409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.356C>T
  hgvsp: ENST00000567595.1:c.356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.405C>T
  hgvsp: ENST00000539379.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.426C>T
  hgvsp: ENST00000262301.11:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.99C>T
  hgvsp: ENST00000545827.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.428C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.426C>T
  hgvsp: ENST00000399843.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.426C>T
  hgvsp: ENST00000562226.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.99C>T
  hgvsp: ENST00000570014.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16354C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-219C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile142Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

16-1004437-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004437
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004437
    reference: chr 16
allele count: 2
allele frequency: 1.793850679869408e-5
allele num: 111492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-222G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.423G>C
  hgvsp: ENST00000262301.11:c.423G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.402G>C
  hgvsp: ENST00000539379.1:c.402G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.96G>C
  hgvsp: ENST00000570014.1:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.406G>C
  hgvsp: ENST00000568964.1:c.406G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.423G>C
  hgvsp: ENST00000399843.2:c.423G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.353G>C
  hgvsp: ENST00000567595.1:c.353G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.306G>C
  hgvsp: ENST00000562380.1:c.306G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.423G>C
  hgvsp: ENST00000562226.1:c.423G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16351G>C
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.96G>C
  hgvsp: ENST00000545827.2:c.96G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.425G>C
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu141Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-1004438-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004438
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004438
    reference: chr 16
allele count: 1
allele frequency: 8.961858330943504e-6
allele num: 111584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16350T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.305T>G
  hgvsp: ENSP00000455715.1:p.Leu102Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.424T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.95T>G
  hgvsp: ENSP00000443820.2:p.Leu32Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.401T>G
  hgvsp: ENSP00000446322.1:p.Leu134Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.422T>G
  hgvsp: ENSP00000455833.1:p.Leu141Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.95T>G
  hgvsp: ENSP00000454672.1:p.Leu32Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.422T>G
  hgvsp: ENSP00000262301.11:p.Leu141Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.422T>G
  hgvsp: ENSP00000382737.2:p.Leu141Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-223T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.352T>G
  hgvsp: ENSP00000457725.1:p.Leu118Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.405T>G
  hgvsp: ENSP00000456631.1:p.Leu136Arg
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu141Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

16-1004439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004439
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004439
    reference: chr 16
allele count: 1
allele frequency: 8.962661551974475e-6
allele num: 111574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.94C>T
  hgvsp: ENST00000545827.2:c.94C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.404C>T
  hgvsp: ENST00000568964.1:c.404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.94C>T
  hgvsp: ENST00000570014.1:c.94C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-224C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.351C>T
  hgvsp: ENST00000567595.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.421C>T
  hgvsp: ENST00000399843.2:c.421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.400C>T
  hgvsp: ENST00000539379.1:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.421C>T
  hgvsp: ENST00000262301.11:c.421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16349C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.423C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.304C>T
  hgvsp: ENST00000562380.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.421C>T
  hgvsp: ENST00000562226.1:c.421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu141Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

16-1004442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004442
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004442
    reference: chr 16
allele count: 1
allele frequency: 8.961858330943504e-6
allele num: 111584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.420G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.418G>A
  hgvsp: ENSP00000382737.2:p.Val140Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.418G>A
  hgvsp: ENSP00000262301.11:p.Val140Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.301G>A
  hgvsp: ENSP00000455715.1:p.Val101Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16346G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.397G>A
  hgvsp: ENSP00000446322.1:p.Val133Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-227G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.348G>A
  hgvsp: ENSP00000457725.1:p.Val117Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.401G>A
  hgvsp: ENSP00000456631.1:p.Val135Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.91G>A
  hgvsp: ENSP00000454672.1:p.Val31Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.91G>A
  hgvsp: ENSP00000443820.2:p.Val31Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.418G>A
  hgvsp: ENSP00000455833.1:p.Val140Ile
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val140Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-1004443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004443
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004443
    reference: chr 16
allele count: 38
allele frequency: 3.405262025951681e-4
allele num: 111592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.90C>T
  hgvsp: ENST00000570014.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.396C>T
  hgvsp: ENST00000539379.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.300C>T
  hgvsp: ENST00000562380.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-228C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.417C>T
  hgvsp: ENST00000399843.2:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16345C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.400C>T
  hgvsp: ENST00000568964.1:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.90C>T
  hgvsp: ENST00000545827.2:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.347C>T
  hgvsp: ENST00000567595.1:c.347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.419C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.417C>T
  hgvsp: ENST00000562226.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.417C>T
  hgvsp: ENST00000262301.11:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24648
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Phe139Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

16-1004447-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004447
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004447
    reference: chr 16
allele count: 48
allele frequency: 4.292075755137078e-4
allele num: 111834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16341C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.413C>G
  hgvsp: ENSP00000382737.2:p.Ser138Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.413C>G
  hgvsp: ENSP00000455833.1:p.Ser138Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-232C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.296C>G
  hgvsp: ENSP00000455715.1:p.Ser99Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.86C>G
  hgvsp: ENSP00000443820.2:p.Ser29Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.343C>G
  hgvsp: ENSP00000457725.1:p.Ser115Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.86C>G
  hgvsp: ENSP00000454672.1:p.Ser29Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.415C>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.392C>G
  hgvsp: ENSP00000446322.1:p.Ser131Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.413C>G
  hgvsp: ENSP00000262301.11:p.Ser138Cys
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.396C>G
  hgvsp: ENSP00000456631.1:p.Ser133Cys
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24646
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser138Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-1004449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004449
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004449
    reference: chr 16
allele count: 1479
allele frequency: 1.321810317091481e-2
allele num: 111892
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.411G>A
  hgvsp: ENST00000262301.11:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.411G>A
  hgvsp: ENST00000562226.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.390G>A
  hgvsp: ENST00000539379.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.413G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.84G>A
  hgvsp: ENST00000570014.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.84G>A
  hgvsp: ENST00000545827.2:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.411G>A
  hgvsp: ENST00000399843.2:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.294G>A
  hgvsp: ENST00000562380.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.394G>A
  hgvsp: ENST00000568964.1:c.394G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-234G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16339G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.341G>A
  hgvsp: ENST00000567595.1:c.341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10647
  bin: 2.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 1.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 3.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 1.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
hgvs: p.Ser137Ser
num of homozygotes: 13
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-1004450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004450
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004450
    reference: chr 16
allele count: 3
allele frequency: 2.680629769287131e-5
allele num: 111914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.410C>T
  hgvsp: ENSP00000382737.2:p.Ser137Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.410C>T
  hgvsp: ENSP00000455833.1:p.Ser137Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.412C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.83C>T
  hgvsp: ENSP00000454672.1:p.Ser28Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.389C>T
  hgvsp: ENSP00000446322.1:p.Ser130Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.410C>T
  hgvsp: ENSP00000262301.11:p.Ser137Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.293C>T
  hgvsp: ENSP00000455715.1:p.Ser98Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.83C>T
  hgvsp: ENSP00000443820.2:p.Ser28Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-235C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.340C>T
  hgvsp: ENSP00000457725.1:p.Ser114Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.393C>T
  hgvsp: ENSP00000456631.1:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16338C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23944
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser137Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-1004450-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004450
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004450
    reference: chr 16
allele count: 1
allele frequency: 8.935432564290437e-6
allele num: 111914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.293C>A
  hgvsp: ENSP00000455715.1:p.Ser98Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.410C>A
  hgvsp: ENSP00000455833.1:p.Ser137Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.83C>A
  hgvsp: ENSP00000454672.1:p.Ser28Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.83C>A
  hgvsp: ENSP00000443820.2:p.Ser28Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.410C>A
  hgvsp: ENSP00000262301.11:p.Ser137Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.393C>A
  hgvsp: ENSP00000456631.1:p.Ser132Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.389C>A
  hgvsp: ENSP00000446322.1:p.Ser130Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-235C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16338C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.412C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.410C>A
  hgvsp: ENSP00000382737.2:p.Ser137Ter
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.340C>A
  hgvsp: ENSP00000457725.1:p.Ser114Ter
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser137Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-1004452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004452
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004452
    reference: chr 16
allele count: 1
allele frequency: 8.919651776794634e-6
allele num: 112112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.408C>T
  hgvsp: ENST00000562226.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.408C>T
  hgvsp: ENST00000399843.2:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.391C>T
  hgvsp: ENST00000568964.1:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16336C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.291C>T
  hgvsp: ENST00000562380.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.408C>T
  hgvsp: ENST00000262301.11:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.81C>T
  hgvsp: ENST00000570014.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.81C>T
  hgvsp: ENST00000545827.2:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.410C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.387C>T
  hgvsp: ENST00000539379.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.338C>T
  hgvsp: ENST00000567595.1:c.338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-237C>T
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10688
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile136Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

16-1004455-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004455
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004455
    reference: chr 16
allele count: 1
allele frequency: 8.928730870194111e-6
allele num: 111998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.78C>A
  hgvsp: ENST00000570014.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.388C>A
  hgvsp: ENST00000568964.1:c.388C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.405C>A
  hgvsp: ENST00000562226.1:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.405C>A
  hgvsp: ENST00000262301.11:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.405C>A
  hgvsp: ENST00000399843.2:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.78C>A
  hgvsp: ENST00000545827.2:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.407C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.335C>A
  hgvsp: ENST00000567595.1:c.335C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.384C>A
  hgvsp: ENST00000539379.1:c.384C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16333C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.288C>A
  hgvsp: ENST00000562380.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-240C>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly135Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-1004459-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004459
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004459
    reference: chr 16
allele count: 1
allele frequency: 8.903133903133903e-6
allele num: 112320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.380T>G
  hgvsp: ENSP00000446322.1:p.Leu127Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16329T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.401T>G
  hgvsp: ENSP00000262301.11:p.Leu134Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.74T>G
  hgvsp: ENSP00000443820.2:p.Leu25Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.401T>G
  hgvsp: ENSP00000455833.1:p.Leu134Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.401T>G
  hgvsp: ENSP00000382737.2:p.Leu134Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.384T>G
  hgvsp: ENSP00000456631.1:p.Leu129Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-244T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.74T>G
  hgvsp: ENSP00000454672.1:p.Leu25Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.403T>G
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.284T>G
  hgvsp: ENSP00000455715.1:p.Leu95Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.331T>G
  hgvsp: ENSP00000457725.1:p.Leu111Arg
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu134Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

16-1004463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004463
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004463
    reference: chr 16
allele count: 1
allele frequency: 8.922835320151331e-6
allele num: 112072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.70G>A
  hgvsp: ENSP00000443820.2:p.Gly24Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.397G>A
  hgvsp: ENSP00000262301.11:p.Gly133Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.380G>A
  hgvsp: ENSP00000456631.1:p.Gly128Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.376G>A
  hgvsp: ENSP00000446322.1:p.Gly126Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.399G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-248G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.70G>A
  hgvsp: ENSP00000454672.1:p.Gly24Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.280G>A
  hgvsp: ENSP00000455715.1:p.Gly94Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.397G>A
  hgvsp: ENSP00000455833.1:p.Gly133Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.397G>A
  hgvsp: ENSP00000382737.2:p.Gly133Arg
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16325G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.327G>A
  hgvsp: ENSP00000457725.1:p.Gly110Arg
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22573
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly133Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-1004464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004464
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004464
    reference: chr 16
allele count: 11
allele frequency: 9.805319831705056e-5
allele num: 112184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.396C>T
  hgvsp: ENST00000562226.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.69C>T
  hgvsp: ENST00000570014.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.379C>T
  hgvsp: ENST00000568964.1:c.379C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.69C>T
  hgvsp: ENST00000545827.2:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.326C>T
  hgvsp: ENST00000567595.1:c.326C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-249C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.396C>T
  hgvsp: ENST00000262301.11:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.375C>T
  hgvsp: ENST00000539379.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16324C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.398C>T
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.279C>T
  hgvsp: ENST00000562380.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.396C>T
  hgvsp: ENST00000399843.2:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22758
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Leu132Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

16-1004469-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004469
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004469
    reference: chr 16
allele count: 1
allele frequency: 8.883992821733801e-6
allele num: 112562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.391C>A
  hgvsp: ENSP00000455833.1:p.Leu131Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.64C>A
  hgvsp: ENSP00000454672.1:p.Leu22Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.391C>A
  hgvsp: ENSP00000262301.11:p.Leu131Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.393C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.391C>A
  hgvsp: ENSP00000382737.2:p.Leu131Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.64C>A
  hgvsp: ENSP00000443820.2:p.Leu22Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-254C>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.274C>A
  hgvsp: ENSP00000455715.1:p.Leu92Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.374C>A
  hgvsp: ENSP00000456631.1:p.Leu126Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.370C>A
  hgvsp: ENSP00000446322.1:p.Leu124Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.321C>A
  hgvsp: ENSP00000457725.1:p.Leu108Ile
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16319C>A
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22890
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu131Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-1004472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004472
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004472
    reference: chr 16
allele count: 1
allele frequency: 8.890943684762701e-6
allele num: 112474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16316G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.271G>A
  hgvsp: ENSP00000455715.1:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.318G>A
  hgvsp: ENSP00000457725.1:p.Ala107Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.367G>A
  hgvsp: ENSP00000446322.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.388G>A
  hgvsp: ENSP00000455833.1:p.Ala130Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.371G>A
  hgvsp: ENSP00000456631.1:p.Ala125Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.390G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.388G>A
  hgvsp: ENSP00000262301.11:p.Ala130Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-257G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.388G>A
  hgvsp: ENSP00000382737.2:p.Ala130Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.61G>A
  hgvsp: ENSP00000443820.2:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.61G>A
  hgvsp: ENSP00000454672.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala130Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

16-1004473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1004473
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1004473
    reference: chr 16
allele count: 1
allele frequency: 8.884466398948079e-6
allele num: 112556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103227
  ensembl transcript: ENST00000566609
  gene symbol: LMF1
  hgvsc: ENST00000566609.1:n.389G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455715
  ensembl transcript: ENST00000562380
  gene symbol: LMF1
  hgvsc: ENST00000562380.1:c.270G>A
  hgvsp: ENST00000562380.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000382737
  ensembl transcript: ENST00000399843
  gene symbol: LMF1
  hgvsc: ENST00000399843.2:c.387G>A
  hgvsp: ENST00000399843.2:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000457725
  ensembl transcript: ENST00000567595
  gene symbol: LMF1
  hgvsc: ENST00000567595.1:c.317G>A
  hgvsp: ENST00000567595.1:c.317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000262301
  ensembl transcript: ENST00000262301
  gene symbol: LMF1
  hgvsc: ENST00000262301.11:c.387G>A
  hgvsp: ENST00000262301.11:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000458135
  ensembl transcript: ENST00000568897
  gene symbol: LMF1
  hgvsc: ENST00000568897.1:c.-258G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000446322
  ensembl transcript: ENST00000539379
  gene symbol: LMF1
  hgvsc: ENST00000539379.1:c.366G>A
  hgvsp: ENST00000539379.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000454672
  ensembl transcript: ENST00000570014
  gene symbol: LMF1
  hgvsc: ENST00000570014.1:c.60G>A
  hgvsp: ENST00000570014.1:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000437418
  ensembl transcript: ENST00000543238
  gene symbol: LMF1
  hgvsc: ENST00000543238.1:c.-49+16315G>A
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000455833
  ensembl transcript: ENST00000562226
  gene symbol: LMF1
  hgvsc: ENST00000562226.1:c.387G>A
  hgvsp: ENST00000562226.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000456631
  ensembl transcript: ENST00000568964
  gene symbol: LMF1
  hgvsc: ENST00000568964.1:c.370G>A
  hgvsp: ENST00000568964.1:c.370G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103227
  ensembl protein: ENSP00000443820
  ensembl transcript: ENST00000545827
  gene symbol: LMF1
  hgvsc: ENST00000545827.2:c.60G>A
  hgvsp: ENST00000545827.2:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14154
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu129Leu
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1179
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 8.237232289950577e-4
allele num: 1214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.717391304347826e-3
allele num: 368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.94e-2

QD
type: SiteQuality
SIO_000300: 1.134e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.47192e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26947
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.169572107765452e-4
allele num: 6310
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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FS
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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SIO_000300: 8.37e-1

MQRankSum
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QD
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ReadPosRankSum
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SIO_000300: -2.78e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.584786053882726e-4
allele num: 6310
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.537e0

QD
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 4.18e-2

BaseQRankSum
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SIO_000300: -2.78e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 7966
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.5e0

ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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DP
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FS
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.38e0

QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -4.65e-2

FS
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ReadPosRankSum
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SIO_000300: -7.2e-1

DP
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -7.2e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.196172248803828e-4
allele num: 8360
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele num: 1792
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East Asian
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Other
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num of homozygotes: 0

FS
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SIO_000300: 1.128e0

BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

African
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allele num: 1882
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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FS
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MQ
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MQRankSum
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 2040
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Other
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East Asian
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.858390633711206e-4
allele num: 10762
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -7.17e-1

QD
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BaseQRankSum
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MQ
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VQSLOD
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DP
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FS
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InbreedingCoeff
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MQRankSum
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SIO_000300: -1.43e-1

ReadPosRankSum
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SIO_000300: 3.87e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
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allele count: 2
allele frequency: 8.488964346349745e-4
allele num: 2356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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SIO_000300: 7.13957e5

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13834
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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Latino
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ReadPosRankSum
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SIO_000300: 1.68e0

BaseQRankSum
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SIO_000300: 5.73e-1

MQ
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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MQRankSum
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DP
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SIO_000300: 7.44893e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.148897058823529e-4
allele num: 8704
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.455e0

DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.967e1

MQRankSum
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InbreedingCoeff
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SIO_000300: -1.85e-2

QD
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SIO_000300: 1.231e1

VQSLOD
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SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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East Asian
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allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.434393153296971e-5
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num of homozygotes: 0

African
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Other
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South Asian
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European (Finnish)
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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East Asian
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Latino
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allele num: 7906
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African
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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East Asian
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Latino
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DP
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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num of homozygotes: 0

Other
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FS
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QD
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MQRankSum
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5344
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45314
num of homozygotes: 0

Latino
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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FS
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 5460
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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FS
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.691045911896508e-4
allele num: 47308
num of homozygotes: 0

Other
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African
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Latino
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European (Finnish)
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South Asian
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
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African
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allele frequency: 1.081165778752742e-2
allele num: 6382
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European (Finnish)
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East Asian
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South Asian
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allele frequency: 4.916420845624386e-4
allele num: 12204
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Latino
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allele frequency: 2.386634844868735e-4
allele num: 8380
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QD
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MQRankSum
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FS
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

East Asian
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allele num: 5822
num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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African
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Other
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MQ
type: SiteQuality
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DP
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QD
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5959
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48456
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.693193362682018e-4
allele num: 5906
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Latino
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allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.129e1

InbreedingCoeff
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MQ
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SIO_000300: 5.954e1

VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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DP
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SIO_000300: 1.20723e6

ReadPosRankSum
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SIO_000300: 1.37e0

ClippingRankSum
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SIO_000300: -9.1e-2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 1
allele frequency: 8.076239702794379e-5
allele num: 12382
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.049432307250891e-5
allele num: 48794
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VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

ReadPosRankSum
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DP
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MQ
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MQRankSum
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -4.2e-3

ClippingRankSum
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SIO_000300: 2.54e-1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.608492842206852e-4
allele num: 12434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5024
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 78
allele frequency: 1.176115802171291e-2
allele num: 6632
num of homozygotes: 1

European (Non-Finnish)
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allele count: 12
allele frequency: 2.440512507626602e-4
allele num: 49170
num of homozygotes: 0

Other
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allele count: 0
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ClippingRankSum
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SIO_000300: -1.81e-1

MQRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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SIO_000300: 1.368e1

BaseQRankSum
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SIO_000300: 1.9e0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.917692632224907e-5
allele num: 52146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6960
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -2.275e0

BaseQRankSum
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.51e0

DP
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QD
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MQ
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SIO_000300: 5.919e1

InbreedingCoeff
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VQSLOD
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MQRankSum
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SIO_000300: 1.58e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54754
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.794430089003733e-5
allele num: 55728
num of homozygotes: 0

Latino
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South Asian
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East Asian
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Other
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 13

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1984
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1075
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 4881
bin: 9.75e1
variant carriers: 653

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3326
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 9476
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1950
bin: 3.25e1
variant carriers: 2

Latino
type: Population
allele count: 36
allele frequency: 3.550996251726179e-3
allele num: 10138
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.31578947368421e-3
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.483470930435086e-5
allele num: 57414
num of homozygotes: 0

African
type: Population
allele count: 683
allele frequency: 8.649949341438704e-2
allele num: 7896
num of homozygotes: 28

South Asian
type: Population
allele count: 2
allele frequency: 1.446759259259259e-4
allele num: 13824
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

FS
type: SiteQuality
SIO_000300: 1.188e0

DP
type: SiteQuality
SIO_000300: 1.444787e6

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeDepth
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.450417500517563e-5
allele num: 57964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.50385423966363e-4
allele num: 5708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.484e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.4e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.45239e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeDepth
all individuals: 195
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2209
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4757
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
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variant carriers: 0

GenotypeQuality
all individuals: 33456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8644
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4301
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 464
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.132065143013548e-5
allele num: 58456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 1.707e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.465085e6

QD
type: SiteQuality
SIO_000300: 1.053e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

GenotypeDepth
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8472
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
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variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
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variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 7811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.285347043701799e-3
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 1.176e1

DP
type: SiteQuality
SIO_000300: 1.487039e6

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: -9.018e-1

FS
type: SiteQuality
SIO_000300: 3.284e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.581e0

GenotypeDepth
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 433
bin: 4.25e1
variant carriers: 4

GenotypeDepth
all individuals: 409
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 31965
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7523
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
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GenotypeQuality
all individuals: 4354
bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 864
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

East Asian
type: Population
allele count: 53
allele frequency: 6.671701913393756e-3
allele num: 7944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.544774050457444e-4
allele num: 14428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.494816e6

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeDepth
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31889
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6889
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 931
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60544
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.198465963566635e-4
allele num: 8344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.683e0

DP
type: SiteQuality
SIO_000300: 1.513843e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

QD
type: SiteQuality
SIO_000300: 1.562e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30742
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variant carriers: 0

GenotypeDepth
all individuals: 296
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variant carriers: 0

GenotypeQuality
all individuals: 323
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GenotypeQuality
all individuals: 1033
bin: 5.25e1
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GenotypeQuality
all individuals: 3885
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
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GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 568
bin: 8.25e1
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GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34422
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.191327138432213e-4
allele num: 8394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60914
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 2.136e0

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.518744e6

ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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QD
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 9.42151874882231e-5
allele num: 10614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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East Asian
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allele num: 8092
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African
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South Asian
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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African
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 61180
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South Asian
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ClippingRankSum
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DP
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MQ
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 14886
num of homozygotes: 0

East Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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European (Finnish)
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8182
num of homozygotes: 0

Latino
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Other
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 61572
num of homozygotes: 0

Latino
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East Asian
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South Asian
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MQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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Latino
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allele num: 10656
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African
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QD
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 61544
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 9.391435011269723e-5
allele num: 10648
num of homozygotes: 0

South Asian
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allele frequency: 1.408639656560236e-3
allele num: 14908
num of homozygotes: 0

Other
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African
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allele num: 8480
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.87757291971515e-5
allele num: 61506
num of homozygotes: 0

European (Finnish)
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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allele num: 8520
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South Asian
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East Asian
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European (Non-Finnish)
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allele num: 61716
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Other
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VQSLOD
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QD
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MQ
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DP
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQ
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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Other
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East Asian
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South Asian
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European (Finnish)
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FS
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MQ
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DP
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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African
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Other
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Latino
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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QD
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.613215461056979e-5
allele num: 61988
num of homozygotes: 0

Latino
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South Asian
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African
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European (Finnish)
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Other
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East Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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BaseQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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South Asian
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Other
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East Asian
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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African
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South Asian
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Latino
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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QD
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InbreedingCoeff
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DP
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FS
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 10

GenotypeQuality
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bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 383
bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 5

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1423

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27521
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1240
bin: 5.25e1
variant carriers: 2

South Asian
type: Population
allele count: 84
allele frequency: 5.554086220576567e-3
allele num: 15124
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 3.174010455563854e-3
allele num: 10712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 3.97196261682243e-3
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1282
allele frequency: 2.062286854127791e-2
allele num: 62164
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 38
allele frequency: 6.08e-3
allele num: 6250
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.557457212713936e-3
allele num: 818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
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SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.517464e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeDepth
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2846
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GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4307
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607303587501607e-5
allele num: 62216
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.20889748549323e-4
allele num: 8272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -2.102e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
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SIO_000300: -1.15e-1

FS
type: SiteQuality
SIO_000300: 1.5444e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.492931e6

GenotypeDepth
all individuals: 260
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variant carriers: 0

GenotypeDepth
all individuals: 264
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1868
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GenotypeQuality
all individuals: 1073
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GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
all individuals: 1280
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variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607303587501607e-5
allele num: 62216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 1.324e1

VQSLOD
type: SiteQuality
SIO_000300: -2.102e0

FS
type: SiteQuality
SIO_000300: 1.5444e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 1.492931e6

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 304
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variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 280
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variant carriers: 0

GenotypeQuality
all individuals: 533
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variant carriers: 0

GenotypeQuality
all individuals: 27873
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variant carriers: 0

GenotypeQuality
all individuals: 2821
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variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 1251
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GenotypeQuality
all individuals: 3881
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variant carriers: 0

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 1080
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GenotypeQuality
all individuals: 1772
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variant carriers: 0

GenotypeQuality
all individuals: 3155
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variant carriers: 0

GenotypeQuality
all individuals: 1185
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variant carriers: 0

GenotypeQuality
all individuals: 6889
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variant carriers: 0

GenotypeQuality
all individuals: 390
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GenotypeQuality
all individuals: 2547
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GenotypeQuality
all individuals: 4304
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variant carriers: 1

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 1264
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GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604827320580306e-5
allele num: 62312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.4926e6

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 2.641e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.195e0

QD
type: SiteQuality
SIO_000300: 1.158e1

GenotypeDepth
all individuals: 775
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23327
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variant carriers: 0

GenotypeDepth
all individuals: 315
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variant carriers: 0

GenotypeDepth
all individuals: 217
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GenotypeQuality
all individuals: 259
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6824
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variant carriers: 0

GenotypeQuality
all individuals: 759
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variant carriers: 0

GenotypeQuality
all individuals: 339
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GenotypeQuality
all individuals: 1721
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variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 26086
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variant carriers: 0

GenotypeQuality
all individuals: 3011
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GenotypeQuality
all individuals: 612
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variant carriers: 0

GenotypeQuality
all individuals: 1087
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variant carriers: 0

GenotypeQuality
all individuals: 2083
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GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 391
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GenotypeQuality
all individuals: 4304
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3881
bin: 6.75e1
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GenotypeQuality
all individuals: 1433
bin: 4.25e1
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GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 1188
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62222
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.204819277108434e-4
allele num: 8300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.542e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 3.81e0

DP
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SIO_000300: 1.488737e6

ClippingRankSum
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SIO_000300: -1.452e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

GenotypeDepth
all individuals: 315
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
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variant carriers: 0

GenotypeDepth
all individuals: 303
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GenotypeDepth
all individuals: 261
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GenotypeQuality
all individuals: 2736
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GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 1964
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GenotypeQuality
all individuals: 1216
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GenotypeQuality
all individuals: 2203
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GenotypeQuality
all individuals: 382
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GenotypeQuality
all individuals: 3424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
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variant carriers: 0

GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 986
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GenotypeQuality
all individuals: 1125
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GenotypeQuality
all individuals: 1488
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 6839
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GenotypeQuality
all individuals: 3958
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GenotypeQuality
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GenotypeQuality
all individuals: 622
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GenotypeQuality
all individuals: 4305
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GenotypeQuality
all individuals: 252
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variant carriers: 0

GenotypeQuality
all individuals: 25066
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.579813133307015e-5
allele num: 15198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

FS
type: SiteQuality
SIO_000300: 3.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

DP
type: SiteQuality
SIO_000300: 1.487338e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.867e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 224
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 3174
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GenotypeQuality
all individuals: 1210
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GenotypeQuality
all individuals: 250
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GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 300
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variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 620
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GenotypeQuality
all individuals: 1556
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1110
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4306
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GenotypeQuality
all individuals: 1908
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GenotypeQuality
all individuals: 3927
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GenotypeQuality
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GenotypeQuality
all individuals: 2721
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GenotypeQuality
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GenotypeQuality
all individuals: 25089
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GenotypeQuality
all individuals: 821
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.584145377929945e-5
allele num: 15188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 2.188e0

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

DP
type: SiteQuality
SIO_000300: 1.488425e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

GenotypeDepth
all individuals: 211
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variant carriers: 0

GenotypeDepth
all individuals: 303
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variant carriers: 0

GenotypeDepth
all individuals: 218
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variant carriers: 0

GenotypeDepth
all individuals: 315
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4315
bin: 9.75e1
variant carriers: 11

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6747
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.578081831337982e-5
allele num: 15202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.025682182985554e-5
allele num: 62300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.820438659918053e-4
allele num: 8298
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.162e1

DP
type: SiteQuality
SIO_000300: 1.491236e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 1.744e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.598567683355713e-5
allele num: 62556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.488885e6

MQ
type: SiteQuality
SIO_000300: 5.805e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.086e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

GenotypeDepth
all individuals: 2847
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variant carriers: 0

GenotypeDepth
all individuals: 224
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variant carriers: 0

GenotypeDepth
all individuals: 218
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variant carriers: 0

GenotypeDepth
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2710
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2332
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variant carriers: 0

GenotypeQuality
all individuals: 1519
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.561679790026247e-5
allele num: 15240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 3.916e0

QD
type: SiteQuality
SIO_000300: 9.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.488994e6

VQSLOD
type: SiteQuality
SIO_000300: -1.761e0

GenotypeDepth
all individuals: 280
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variant carriers: 0

GenotypeDepth
all individuals: 335
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variant carriers: 0

GenotypeDepth
all individuals: 805
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variant carriers: 0

GenotypeDepth
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 6473
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variant carriers: 0

GenotypeQuality
all individuals: 1079
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GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 3126
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GenotypeQuality
all individuals: 24772
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2698
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variant carriers: 0

GenotypeQuality
all individuals: 3490
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variant carriers: 0

GenotypeQuality
all individuals: 2164
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GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 4.25e1
variant carriers: 0