17-15619773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619773
    reference: chr 17
allele count: 3
allele frequency: 2.514163118903154e-5
allele num: 119324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.735T>C
  hgvsp: ENST00000421016.1:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8212T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.735T>C
  hgvsp: ENST00000464847.2:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.705T>C
  hgvsp: ENST00000593105.1:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.735T>C
  hgvsp: ENST00000413242.2:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8212T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.735T>C
  hgvsp: ENST00000583566.1:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*443T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000461982
  ensembl transcript: ENST00000472486
  gene symbol: ZNF286A
  hgvsc: ENST00000472486.1:c.*443T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.705T>C
  hgvsp: ENST00000412988.2:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Cys245Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-15619776-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619776
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619776
    reference: chr 17
allele count: 1
allele frequency: 8.354916868577158e-6
allele num: 119690
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.738T>C
  hgvsp: ENST00000464847.2:c.738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.738T>C
  hgvsp: ENST00000421016.1:c.738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8215T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.738T>C
  hgvsp: ENST00000413242.2:c.738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000461982
  ensembl transcript: ENST00000472486
  gene symbol: ZNF286A
  hgvsc: ENST00000472486.1:c.*446T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.738T>C
  hgvsp: ENST00000583566.1:c.738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.708T>C
  hgvsp: ENST00000412988.2:c.708T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.708T>C
  hgvsp: ENST00000593105.1:c.708T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*446T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8215T>C
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn246Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-15619782-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619782
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619782
    reference: chr 17
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.744T>G
  hgvsp: ENSP00000458062.1:p.Cys248Trp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.714T>G
  hgvsp: ENSP00000408168.2:p.Cys238Trp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.714T>G
  hgvsp: ENSP00000466154.1:p.Cys238Trp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.744T>G
  hgvsp: ENSP00000464063.1:p.Cys248Trp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.744T>G
  hgvsp: ENSP00000397163.1:p.Cys248Trp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000461982
  ensembl transcript: ENST00000472486
  gene symbol: ZNF286A
  hgvsc: ENST00000472486.1:c.*452T>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.744T>G
  hgvsp: ENSP00000464218.1:p.Cys248Trp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8221T>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8221T>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*452T>G
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys248Trp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

17-15619798-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619798
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619798
    reference: chr 17
allele count: 2
allele frequency: 1.65953068472236e-5
allele num: 120516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.760T>C
  hgvsp: ENSP00000464218.1:p.Tyr254His
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8237T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.760T>C
  hgvsp: ENSP00000397163.1:p.Tyr254His
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.730T>C
  hgvsp: ENSP00000408168.2:p.Tyr244His
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000461982
  ensembl transcript: ENST00000472486
  gene symbol: ZNF286A
  hgvsc: ENST00000472486.1:c.*468T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.760T>C
  hgvsp: ENSP00000464063.1:p.Tyr254His
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.760T>C
  hgvsp: ENSP00000458062.1:p.Tyr254His
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.730T>C
  hgvsp: ENSP00000466154.1:p.Tyr244His
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8237T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*468T>C
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Tyr254His
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-15619815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619815
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619815
    reference: chr 17
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.777T>C
  hgvsp: ENST00000583566.1:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.777T>C
  hgvsp: ENST00000413242.2:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.747T>C
  hgvsp: ENST00000412988.2:c.747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8254T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*485T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8254T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.777T>C
  hgvsp: ENST00000421016.1:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.747T>C
  hgvsp: ENST00000593105.1:c.747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.777T>C
  hgvsp: ENST00000464847.2:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile259Ile
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

17-15619816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619816
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619816
    reference: chr 17
allele count: 5
allele frequency: 4.146555870693802e-5
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.778C>T
  hgvsp: ENSP00000458062.1:p.Arg260Ter
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.748C>T
  hgvsp: ENSP00000408168.2:p.Arg250Ter
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.748C>T
  hgvsp: ENSP00000466154.1:p.Arg250Ter
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.778C>T
  hgvsp: ENSP00000464063.1:p.Arg260Ter
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.778C>T
  hgvsp: ENSP00000397163.1:p.Arg260Ter
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*486C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8255C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8255C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.778C>T
  hgvsp: ENSP00000464218.1:p.Arg260Ter
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg260Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-15619817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619817
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619817
    reference: chr 17
allele count: 6
allele frequency: 4.975949577044286e-5
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.779G>A
  hgvsp: ENSP00000464218.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.779G>A
  hgvsp: ENSP00000464063.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8256G>A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8256G>A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.779G>A
  hgvsp: ENSP00000458062.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.779G>A
  hgvsp: ENSP00000397163.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.749G>A
  hgvsp: ENSP00000466154.1:p.Arg250Gln
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.749G>A
  hgvsp: ENSP00000408168.2:p.Arg250Gln
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*487G>A
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg260Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

17-15619824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619824
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619824
    reference: chr 17
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.786G>A
  hgvsp: ENST00000583566.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.786G>A
  hgvsp: ENST00000413242.2:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8263G>A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.756G>A
  hgvsp: ENST00000412988.2:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.786G>A
  hgvsp: ENST00000464847.2:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*494G>A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.756G>A
  hgvsp: ENST00000593105.1:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.786G>A
  hgvsp: ENST00000421016.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8263G>A
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln262Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-15619827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619827
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619827
    reference: chr 17
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.759A>G
  hgvsp: ENST00000593105.1:c.759A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8266A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.789A>G
  hgvsp: ENST00000421016.1:c.789A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.789A>G
  hgvsp: ENST00000583566.1:c.789A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*497A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8266A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.789A>G
  hgvsp: ENST00000413242.2:c.789A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.759A>G
  hgvsp: ENST00000412988.2:c.759A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.789A>G
  hgvsp: ENST00000464847.2:c.789A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg263Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-15619830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619830
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619830
    reference: chr 17
allele count: 1
allele frequency: 8.29476268683953e-6
allele num: 120558
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.792C>A
  hgvsp: ENST00000464847.2:c.792C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8269C>A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.792C>A
  hgvsp: ENST00000583566.1:c.792C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.792C>A
  hgvsp: ENST00000421016.1:c.792C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.762C>A
  hgvsp: ENST00000593105.1:c.762C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.762C>A
  hgvsp: ENST00000412988.2:c.762C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.792C>A
  hgvsp: ENST00000413242.2:c.792C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8269C>A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*500C>A
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53487
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val264Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-15619836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619836
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619836
    reference: chr 17
allele count: 2
allele frequency: 1.659062629614268e-5
allele num: 120550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.768T>G
  hgvsp: ENST00000412988.2:c.768T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.798T>G
  hgvsp: ENST00000413242.2:c.798T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8275T>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.798T>G
  hgvsp: ENST00000464847.2:c.798T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8275T>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*506T>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.798T>G
  hgvsp: ENST00000421016.1:c.798T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.768T>G
  hgvsp: ENST00000593105.1:c.768T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.798T>G
  hgvsp: ENST00000583566.1:c.798T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr266Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-15619845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619845
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619845
    reference: chr 17
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.807A>G
  hgvsp: ENST00000464847.2:c.807A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8284A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.807A>G
  hgvsp: ENST00000413242.2:c.807A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.777A>G
  hgvsp: ENST00000412988.2:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.777A>G
  hgvsp: ENST00000593105.1:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.807A>G
  hgvsp: ENST00000421016.1:c.807A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.807A>G
  hgvsp: ENST00000583566.1:c.807A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*515A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8284A>G
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys269Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-15619848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619848
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619848
    reference: chr 17
allele count: 465
allele frequency: 3.861484803188839e-3
allele num: 120420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.810C>T
  hgvsp: ENST00000413242.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8287C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.780C>T
  hgvsp: ENST00000593105.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.810C>T
  hgvsp: ENST00000421016.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8287C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.810C>T
  hgvsp: ENST00000583566.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*518C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.780C>T
  hgvsp: ENST00000412988.2:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.810C>T
  hgvsp: ENST00000464847.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13933
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 40978
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro270Pro
num of homozygotes: 6
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

17-15619854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619854
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619854
    reference: chr 17
allele count: 1
allele frequency: 8.308684236764266e-6
allele num: 120356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8293C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.786C>T
  hgvsp: ENST00000412988.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*524C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.816C>T
  hgvsp: ENST00000421016.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.816C>T
  hgvsp: ENST00000583566.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.786C>T
  hgvsp: ENST00000593105.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.816C>T
  hgvsp: ENST00000464847.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8293C>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.816C>T
  hgvsp: ENST00000413242.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr272Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-15619856-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619856
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619856
    reference: chr 17
allele count: 1
allele frequency: 8.311584686736373e-6
allele num: 120314
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.818G>T
  hgvsp: ENSP00000464218.1:p.Cys273Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.818G>T
  hgvsp: ENSP00000458062.1:p.Cys273Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.788G>T
  hgvsp: ENSP00000408168.2:p.Cys263Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.788G>T
  hgvsp: ENSP00000466154.1:p.Cys263Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8295G>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.818G>T
  hgvsp: ENSP00000397163.1:p.Cys273Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.818G>T
  hgvsp: ENSP00000464063.1:p.Cys273Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8295G>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*526G>T
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys273Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

17-15619863-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619863
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619863
    reference: chr 17
allele count: 3
allele frequency: 2.494761001896018e-5
allele num: 120252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.795A>T
  hgvsp: ENSP00000408168.2:p.Glu265Asp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.825A>T
  hgvsp: ENSP00000458062.1:p.Glu275Asp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.825A>T
  hgvsp: ENSP00000397163.1:p.Glu275Asp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.825A>T
  hgvsp: ENSP00000464218.1:p.Glu275Asp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8302A>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8302A>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*533A>T
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.825A>T
  hgvsp: ENSP00000464063.1:p.Glu275Asp
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.795A>T
  hgvsp: ENSP00000466154.1:p.Glu265Asp
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu275Asp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-15619872-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619872
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619872
    reference: chr 17
allele count: 1
allele frequency: 8.316561600771776e-6
allele num: 120242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.834A>G
  hgvsp: ENST00000583566.1:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.834A>G
  hgvsp: ENST00000421016.1:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8311A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.804A>G
  hgvsp: ENST00000412988.2:c.804A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.834A>G
  hgvsp: ENST00000413242.2:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.804A>G
  hgvsp: ENST00000593105.1:c.804A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*542A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.834A>G
  hgvsp: ENST00000464847.2:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8311A>G
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys278Lys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-15619873-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619873
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619872
    reference: chr 17
allele count: 2
allele frequency: 1.66333998669328e-5
allele num: 120240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.806delC
  hgvsp: ENSP00000466154.1:p.Ser269PhefsTer8
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.836delC
  hgvsp: ENSP00000397163.1:p.Ser279PhefsTer8
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8313delC
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.836delC
  hgvsp: ENSP00000464218.1:p.Ser279PhefsTer8
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.836delC
  hgvsp: ENSP00000464063.1:p.Ser279PhefsTer8
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.806delC
  hgvsp: ENSP00000408168.2:p.Ser269PhefsTer8
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*544delC
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.836delC
  hgvsp: ENSP00000458062.1:p.Ser279PhefsTer8
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8313delC
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser279PhefsTer8
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TC
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-15619896-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619896
    reference: chr 17
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.858A>C
  hgvsp: ENSP00000458062.1:p.Leu286Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8335A>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.828A>C
  hgvsp: ENSP00000408168.2:p.Leu276Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*566A>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.858A>C
  hgvsp: ENSP00000397163.1:p.Leu286Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.828A>C
  hgvsp: ENSP00000466154.1:p.Leu276Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.858A>C
  hgvsp: ENSP00000464063.1:p.Leu286Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.858A>C
  hgvsp: ENSP00000464218.1:p.Leu286Phe
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8335A>C
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu286Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-15619912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619912
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619912
    reference: chr 17
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8351A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.844A>G
  hgvsp: ENSP00000408168.2:p.Thr282Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.874A>G
  hgvsp: ENSP00000397163.1:p.Thr292Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*582A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.874A>G
  hgvsp: ENSP00000464063.1:p.Thr292Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.874A>G
  hgvsp: ENSP00000464218.1:p.Thr292Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8351A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.874A>G
  hgvsp: ENSP00000458062.1:p.Thr292Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.844A>G
  hgvsp: ENSP00000466154.1:p.Thr282Ala
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr292Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

17-15619916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619916
    reference: chr 17
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.848A>G
  hgvsp: ENSP00000408168.2:p.His283Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.878A>G
  hgvsp: ENSP00000458062.1:p.His293Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.878A>G
  hgvsp: ENSP00000397163.1:p.His293Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8355A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.878A>G
  hgvsp: ENSP00000464063.1:p.His293Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.848A>G
  hgvsp: ENSP00000466154.1:p.His283Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.878A>G
  hgvsp: ENSP00000464218.1:p.His293Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*586A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8355A>G
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His293Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-15619927-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619927
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619927
    reference: chr 17
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.889C>G
  hgvsp: ENSP00000464218.1:p.Leu297Val
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.889C>G
  hgvsp: ENSP00000464063.1:p.Leu297Val
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*597C>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.889C>G
  hgvsp: ENSP00000458062.1:p.Leu297Val
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.859C>G
  hgvsp: ENSP00000466154.1:p.Leu287Val
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.859C>G
  hgvsp: ENSP00000408168.2:p.Leu287Val
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.889C>G
  hgvsp: ENSP00000397163.1:p.Leu297Val
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8366C>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8366C>G
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu297Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-15619939-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619939
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619939
    reference: chr 17
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.901A>C
  hgvsp: ENSP00000458062.1:p.Ser301Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8378A>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.901A>C
  hgvsp: ENSP00000464063.1:p.Ser301Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.901A>C
  hgvsp: ENSP00000464218.1:p.Ser301Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*609A>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.901A>C
  hgvsp: ENSP00000397163.1:p.Ser301Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.871A>C
  hgvsp: ENSP00000408168.2:p.Ser291Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.871A>C
  hgvsp: ENSP00000466154.1:p.Ser291Arg
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8378A>C
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser301Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-15619954-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619954
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619954
    reference: chr 17
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.916A>G
  hgvsp: ENSP00000458062.1:p.Thr306Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*624A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8393A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8393A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.886A>G
  hgvsp: ENSP00000408168.2:p.Thr296Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.916A>G
  hgvsp: ENSP00000397163.1:p.Thr306Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.886A>G
  hgvsp: ENSP00000466154.1:p.Thr296Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.916A>G
  hgvsp: ENSP00000464063.1:p.Thr306Ala
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.916A>G
  hgvsp: ENSP00000464218.1:p.Thr306Ala
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr306Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-15619960-ACAGAAAGCTCATCCCTTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619960
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619942
    reference: chr 17
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsp: ENSP00000458062.1:p.Glu309_Ala314del
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsp: ENSP00000397163.1:p.Glu309_Ala314del
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsp: ENSP00000408168.2:p.Glu299_Ala304del
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsp: ENSP00000466154.1:p.Glu299_Ala304del
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsp: ENSP00000464063.1:p.Glu309_Ala314del
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsp: ENSP00000464218.1:p.Glu309_Ala314del
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu309_Ala314del
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: ACAGAAAGCTCATCCCTTG
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-15619966-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619966
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619966
    reference: chr 17
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.928A>G
  hgvsp: ENSP00000397163.1:p.Ser310Gly
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.928A>G
  hgvsp: ENSP00000464063.1:p.Ser310Gly
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.928A>G
  hgvsp: ENSP00000458062.1:p.Ser310Gly
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.928A>G
  hgvsp: ENSP00000464218.1:p.Ser310Gly
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.898A>G
  hgvsp: ENSP00000408168.2:p.Ser300Gly
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*636A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.898A>G
  hgvsp: ENSP00000466154.1:p.Ser300Gly
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8405A>G
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8405A>G
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser310Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

17-15619995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15619995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 15619995
    reference: chr 17
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000583675
  gene symbol: ZNF286A
  hgvsc: ENST00000583675.1:n.455+8434T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000397163
  ensembl transcript: ENST00000421016
  gene symbol: ZNF286A
  hgvsc: ENST00000421016.1:c.957T>C
  hgvsp: ENST00000421016.1:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464063
  ensembl transcript: ENST00000583566
  gene symbol: ZNF286A
  hgvsc: ENST00000583566.1:c.957T>C
  hgvsp: ENST00000583566.1:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000379231
  ensembl transcript: ENST00000395894
  gene symbol: ZNF286A
  hgvsc: ENST00000395894.2:c.*665T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000466154
  ensembl transcript: ENST00000593105
  gene symbol: ZNF286A
  hgvsc: ENST00000593105.1:c.927T>C
  hgvsp: ENST00000593105.1:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000458062
  ensembl transcript: ENST00000413242
  gene symbol: ZNF286A
  hgvsc: ENST00000413242.2:c.957T>C
  hgvsp: ENST00000413242.2:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255104
  ensembl transcript: ENST00000585171
  gene symbol: ZNF286A
  hgvsc: ENST00000585171.1:n.549+8434T>C
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000255104
  ensembl protein: ENSP00000408168
  ensembl transcript: ENST00000412988
  gene symbol: ZNF286A
  hgvsc: ENST00000412988.2:c.927T>C
  hgvsp: ENST00000412988.2:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187607
  ensembl protein: ENSP00000464218
  ensembl transcript: ENST00000464847
  gene symbol: ZNF286A
  hgvsc: ENST00000464847.2:c.957T>C
  hgvsp: ENST00000464847.2:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile319Ile
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

18-30825335-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825335
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825335
    reference: chr 18
allele count: 6
allele frequency: 6.523582751647205e-5
allele num: 91974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1467A>T
  hgvsp: ENSP00000300227.8:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124679A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1467A>T
  hgvsp: ENSP00000385867.2:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1467A>T
  hgvsp: ENSP00000385591.1:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1467A>T
  hgvsp: ENSP00000372576.3:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1467A>T
  hgvsp: ENSP00000462370.1:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.108A>T
  hgvsp: ENSP00000462651.1:p.Leu36Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1467A>T
  hgvsp: ENSP00000463254.1:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1467A>T
  hgvsp: ENSP00000385234.1:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13213
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14177
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26009
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu489Phe
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

18-30825338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825338
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825338
    reference: chr 18
allele count: 1
allele frequency: 1.117118727378346e-5
allele num: 89516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1464G>A
  hgvsp: ENST00000583930.1:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1464G>A
  hgvsp: ENST00000300227.8:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1464G>A
  hgvsp: ENST00000403303.1:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124676G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.105G>A
  hgvsp: ENST00000581524.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1464G>A
  hgvsp: ENST00000406524.2:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1464G>A
  hgvsp: ENST00000579947.1:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1464G>A
  hgvsp: ENST00000402325.1:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1464G>A
  hgvsp: ENST00000383096.3:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys488Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

18-30825346-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825346
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825346
    reference: chr 18
allele count: 2
allele frequency: 2.481328006749212e-5
allele num: 80602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124668A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1456A>G
  hgvsp: ENSP00000385867.2:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1456A>G
  hgvsp: ENSP00000300227.8:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1456A>G
  hgvsp: ENSP00000463254.1:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1456A>G
  hgvsp: ENSP00000385591.1:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1456A>G
  hgvsp: ENSP00000462370.1:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1456A>G
  hgvsp: ENSP00000385234.1:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.97A>G
  hgvsp: ENSP00000462651.1:p.Ile33Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1456A>G
  hgvsp: ENSP00000372576.3:p.Ile486Val
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13336
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile486Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

18-30825359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825359
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825359
    reference: chr 18
allele count: 1
allele frequency: 1.438186734165564e-5
allele num: 69532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1443A>G
  hgvsp: ENSP00000385867.2:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1443A>G
  hgvsp: ENSP00000462370.1:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1443A>G
  hgvsp: ENSP00000372576.3:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.84A>G
  hgvsp: ENSP00000462651.1:p.Ile28Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1443A>G
  hgvsp: ENSP00000385234.1:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1443A>G
  hgvsp: ENSP00000385591.1:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1443A>G
  hgvsp: ENSP00000463254.1:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124655A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1443A>G
  hgvsp: ENSP00000300227.8:p.Ile481Met
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3974
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile481Met
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

18-30825366-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825366
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825366
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 63474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1436C>A
  hgvsp: ENSP00000385234.1:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1436C>A
  hgvsp: ENSP00000372576.3:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.77C>A
  hgvsp: ENSP00000462651.1:p.Ser26Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1436C>A
  hgvsp: ENSP00000463254.1:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1436C>A
  hgvsp: ENSP00000462370.1:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1436C>A
  hgvsp: ENSP00000300227.8:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124648C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1436C>A
  hgvsp: ENSP00000385867.2:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1436C>A
  hgvsp: ENSP00000385591.1:p.Ser479Tyr
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23006
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5591
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser479Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

18-30825370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825370
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825370
    reference: chr 18
allele count: 1
allele frequency: 1.66433659543306e-5
allele num: 60084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1432G>A
  hgvsp: ENSP00000462370.1:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.73G>A
  hgvsp: ENSP00000462651.1:p.Glu25Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124644G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1432G>A
  hgvsp: ENSP00000372576.3:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1432G>A
  hgvsp: ENSP00000385867.2:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1432G>A
  hgvsp: ENSP00000463254.1:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1432G>A
  hgvsp: ENSP00000385591.1:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1432G>A
  hgvsp: ENSP00000385234.1:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1432G>A
  hgvsp: ENSP00000300227.8:p.Glu478Lys
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14360
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32800
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu478Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

18-30825371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825371
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825371
    reference: chr 18
allele count: 4
allele frequency: 6.757441632597898e-5
allele num: 59194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.72C>T
  hgvsp: ENST00000581524.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1431C>T
  hgvsp: ENST00000300227.8:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1431C>T
  hgvsp: ENST00000383096.3:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124643C>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1431C>T
  hgvsp: ENST00000403303.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1431C>T
  hgvsp: ENST00000402325.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1431C>T
  hgvsp: ENST00000583930.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1431C>T
  hgvsp: ENST00000579947.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1431C>T
  hgvsp: ENST00000406524.2:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr477Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

18-30825378-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825378
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825378
    reference: chr 18
allele count: 1
allele frequency: 1.854255516410161e-5
allele num: 53930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1424C>G
  hgvsp: ENSP00000385591.1:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1424C>G
  hgvsp: ENSP00000300227.8:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1424C>G
  hgvsp: ENSP00000385867.2:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1424C>G
  hgvsp: ENSP00000385234.1:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1424C>G
  hgvsp: ENSP00000463254.1:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1424C>G
  hgvsp: ENSP00000462370.1:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124636C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.65C>G
  hgvsp: ENSP00000462651.1:p.Ser22Ter
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1424C>G
  hgvsp: ENSP00000372576.3:p.Ser475Ter
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9647
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser475Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

18-30825387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825387
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825387
    reference: chr 18
allele count: 1
allele frequency: 2.120980741494867e-5
allele num: 47148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1415G>A
  hgvsp: ENSP00000385867.2:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1415G>A
  hgvsp: ENSP00000300227.8:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1415G>A
  hgvsp: ENSP00000372576.3:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124627G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1415G>A
  hgvsp: ENSP00000463254.1:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1415G>A
  hgvsp: ENSP00000462370.1:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1415G>A
  hgvsp: ENSP00000385234.1:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1415G>A
  hgvsp: ENSP00000385591.1:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.56G>A
  hgvsp: ENSP00000462651.1:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg472Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

18-30825388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825388
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825388
    reference: chr 18
allele count: 65
allele frequency: 1.414273281114012e-3
allele num: 45960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.55C>T
  hgvsp: ENSP00000462651.1:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1414C>T
  hgvsp: ENSP00000462370.1:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1414C>T
  hgvsp: ENSP00000385234.1:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1414C>T
  hgvsp: ENSP00000372576.3:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1414C>T
  hgvsp: ENSP00000385867.2:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1414C>T
  hgvsp: ENSP00000300227.8:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1414C>T
  hgvsp: ENSP00000385591.1:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124626C>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1414C>T
  hgvsp: ENSP00000463254.1:p.Arg472Trp
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13093
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22957
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30756
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 2
hgvs: p.Arg472Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

18-30825388-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825388
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825388
    reference: chr 18
allele count: 5
allele frequency: 1.087902523933855e-4
allele num: 45960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1414C>G
  hgvsp: ENSP00000385591.1:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1414C>G
  hgvsp: ENSP00000462370.1:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1414C>G
  hgvsp: ENSP00000385234.1:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1414C>G
  hgvsp: ENSP00000372576.3:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1414C>G
  hgvsp: ENSP00000300227.8:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1414C>G
  hgvsp: ENSP00000463254.1:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124626C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1414C>G
  hgvsp: ENSP00000385867.2:p.Arg472Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.55C>G
  hgvsp: ENSP00000462651.1:p.Arg19Gly
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13093
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22957
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg472Gly
num of homozygotes: 1
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

18-30825396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825396
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825396
    reference: chr 18
allele count: 216
allele frequency: 5.474730065392609e-3
allele num: 39454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124618A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-4A>G
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18082
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21266
  bin: 7.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 11658
  bin: 1.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 18809
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 3
hgvs: c.1410-4A>G
num of homozygotes: 7
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

18-30825397-AAAAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825397
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825392
    reference: chr 18
allele count: 1
allele frequency: 2.587991718426501e-5
allele num: 38640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-10_51-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-10_1410-6delACTTT
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18866
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1410-10_1410-6delACTTT
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AAAAGT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

18-30825402-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825402
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825402
    reference: chr 18
allele count: 1
allele frequency: 2.917663535041139e-5
allele num: 34274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124612A>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-10A>T
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

18-30825412-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825412
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825411
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 26914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124601delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-21delA
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16047
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: AT
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

18-30825416-ATAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825416
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825413
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 25552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-27_51-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124595_348+124597delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-27_1410-25delATA
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15365
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: ATAT
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

18-30825426-GTATA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825426
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825422
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 19882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-38_51-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-38_1410-35delTATA
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30943
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: GTATA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

18-30825431-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30825431
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30825431
    reference: chr 18
allele count: 1
allele frequency: 5.526693931690063e-5
allele num: 18094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.51-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+124583A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1410-39A>G
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

18-30846836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846836
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846836
    reference: chr 18
allele count: 1
allele frequency: 1.177967299627762e-5
allele num: 84892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103178A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+44A>G
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6235
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

18-30846842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846842
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846842
    reference: chr 18
allele count: 2
allele frequency: 2.343347237193607e-5
allele num: 85348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103172T>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4767
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

18-30846846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846846
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846846
    reference: chr 18
allele count: 1
allele frequency: 1.167351512887561e-5
allele num: 85664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103168A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+34A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+34A>G
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-30846856-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846856
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846856
    reference: chr 18
allele count: 5
allele frequency: 5.781015146259683e-5
allele num: 86490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103158C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+24C>A
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-30846857-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846857
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846857
    reference: chr 18
allele count: 5
allele frequency: 5.745937622101174e-5
allele num: 87018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103157T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+23T>A
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13951
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

18-30846859-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846859
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846859
    reference: chr 18
allele count: 104
allele frequency: 1.194112108756057e-3
allele num: 87094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103155C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+21C>G
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13345
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/18-30846871-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846871
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846871
    reference: chr 18
allele count: 1
allele frequency: 1.116993945892813e-5
allele num: 89526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103143G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+9G>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+9G>T
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

18-30846871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846871
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846871
    reference: chr 18
allele count: 3
allele frequency: 3.35098183767844e-5
allele num: 89526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103143G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+9G>A
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-30846878-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846878
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846877
    reference: chr 18
allele count: 1
allele frequency: 1.088139281828074e-5
allele num: 91900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.50+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103135delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1409+1delG
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18861
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14216
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1409+1delG
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: AC
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

18-30846881-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846881
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846881
    reference: chr 18
allele count: 1
allele frequency: 1.068581564830843e-5
allele num: 93582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1408A>C
  hgvsp: ENSP00000385591.1:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.49A>C
  hgvsp: ENSP00000462651.1:p.Ser17Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1408A>C
  hgvsp: ENSP00000463254.1:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1408A>C
  hgvsp: ENSP00000385234.1:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1408A>C
  hgvsp: ENSP00000462370.1:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1408A>C
  hgvsp: ENSP00000372576.3:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1408A>C
  hgvsp: ENSP00000385867.2:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1408A>C
  hgvsp: ENSP00000300227.8:p.Ser470Arg
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103133A>C
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9565
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser470Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

18-30846889-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846889
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846890
    reference: chr 18
allele count: 1
allele frequency: 1.037107714007177e-5
allele num: 96422
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1399dupA
  hgvsp: ENSP00000385234.1:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.40dupA
  hgvsp: ENSP00000462651.1:p.Thr14AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1399dupA
  hgvsp: ENSP00000300227.8:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1399dupA
  hgvsp: ENSP00000462370.1:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103124dupA
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1399dupA
  hgvsp: ENSP00000385591.1:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1399dupA
  hgvsp: ENSP00000463254.1:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1399dupA
  hgvsp: ENSP00000372576.3:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1399dupA
  hgvsp: ENSP00000385867.2:p.Thr467AsnfsTer3
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr467AsnfsTer3
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-30846889-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846889
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846889
    reference: chr 18
allele count: 12
allele frequency: 1.244529256808612e-4
allele num: 96422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1400C>A
  hgvsp: ENSP00000385867.2:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1400C>A
  hgvsp: ENSP00000385234.1:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1400C>A
  hgvsp: ENSP00000463254.1:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1400C>A
  hgvsp: ENSP00000372576.3:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1400C>A
  hgvsp: ENSP00000462370.1:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1400C>A
  hgvsp: ENSP00000300227.8:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1400C>A
  hgvsp: ENSP00000385591.1:p.Thr467Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.41C>A
  hgvsp: ENSP00000462651.1:p.Thr14Asn
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103125C>A
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11494
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21394
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12032
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr467Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

18-30846894-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846894
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846893
    reference: chr 18
allele count: 1
allele frequency: 1.017480311755968e-5
allele num: 98282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1394delT
  hgvsp: ENSP00000462370.1:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1394delT
  hgvsp: ENSP00000385591.1:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1394delT
  hgvsp: ENSP00000463254.1:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1394delT
  hgvsp: ENSP00000385867.2:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1394delT
  hgvsp: ENSP00000372576.3:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.35delT
  hgvsp: ENSP00000462651.1:p.Val12GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1394delT
  hgvsp: ENSP00000385234.1:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1394delT
  hgvsp: ENSP00000300227.8:p.Val465GlufsTer17
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103119delT
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22173
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val465GlufsTer17
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: TA
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

18-30846895-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846895
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846895
    reference: chr 18
allele count: 109224
allele frequency: 9.397876477775292e-1
allele num: 116222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1394T>A
  hgvsp: ENSP00000385234.1:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1394T>A
  hgvsp: ENSP00000385867.2:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1394T>A
  hgvsp: ENSP00000372576.3:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1394T>A
  hgvsp: ENSP00000463254.1:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1394T>A
  hgvsp: ENSP00000462370.1:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1394T>A
  hgvsp: ENSP00000300227.8:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.35T>A
  hgvsp: ENSP00000462651.1:p.Val12Glu
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103119T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1394T>A
  hgvsp: ENSP00000385591.1:p.Val465Glu
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 2.25e1
  variant carriers: 10350
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 1985
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 1120
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 5.25e1
  variant carriers: 1668
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.75e1
  variant carriers: 4194
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 4.25e1
  variant carriers: 2998
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 1.75e1
  variant carriers: 9887
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 6.25e1
  variant carriers: 789
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 1.25e1
  variant carriers: 6054
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.25e1
  variant carriers: 5782
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 2.75e1
  variant carriers: 8169
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.25e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 4.75e1
  variant carriers: 2106
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 9.75e1
  variant carriers: 2726
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 572
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 449
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.25e1
  variant carriers: 824
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 5.25e1
  variant carriers: 3786
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 6.75e1
  variant carriers: 3704
hgvs: p.Val465Glu
num of homozygotes: 51369
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-30846908-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846908
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846908
    reference: chr 18
allele count: 3
allele frequency: 2.615199539724881e-5
allele num: 114714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1381A>C
  hgvsp: ENSP00000462370.1:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.22A>C
  hgvsp: ENSP00000462651.1:p.Asn8His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1381A>C
  hgvsp: ENSP00000385867.2:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1381A>C
  hgvsp: ENSP00000372576.3:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1381A>C
  hgvsp: ENSP00000385591.1:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1381A>C
  hgvsp: ENSP00000463254.1:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1381A>C
  hgvsp: ENSP00000300227.8:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103106A>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1381A>C
  hgvsp: ENSP00000385234.1:p.Asn461His
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn461His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

18-30846911-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846911
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846911
    reference: chr 18
allele count: 4
allele frequency: 3.48559577545792e-5
allele num: 114758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1378A>G
  hgvsp: ENSP00000385591.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.19A>G
  hgvsp: ENSP00000462651.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1378A>G
  hgvsp: ENSP00000463254.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1378A>G
  hgvsp: ENSP00000372576.3:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1378A>G
  hgvsp: ENSP00000462370.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1378A>G
  hgvsp: ENSP00000385234.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1378A>G
  hgvsp: ENSP00000385867.2:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103103A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1378A>G
  hgvsp: ENSP00000300227.8:p.Ile460Val
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13232
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile460Val
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

18-30846913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846913
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846913
    reference: chr 18
allele count: 5
allele frequency: 4.355097205769633e-5
allele num: 114808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1376A>G
  hgvsp: ENSP00000385867.2:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1376A>G
  hgvsp: ENSP00000463254.1:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1376A>G
  hgvsp: ENSP00000385234.1:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1376A>G
  hgvsp: ENSP00000462370.1:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1376A>G
  hgvsp: ENSP00000385591.1:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.17A>G
  hgvsp: ENSP00000462651.1:p.Asp6Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1376A>G
  hgvsp: ENSP00000300227.8:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1376A>G
  hgvsp: ENSP00000372576.3:p.Asp459Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103101A>G
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp459Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

18-30846913-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846913
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846913
    reference: chr 18
allele count: 1
allele frequency: 8.710194411539265e-6
allele num: 114808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1376A>C
  hgvsp: ENSP00000385234.1:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.17A>C
  hgvsp: ENSP00000462651.1:p.Asp6Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1376A>C
  hgvsp: ENSP00000462370.1:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1376A>C
  hgvsp: ENSP00000300227.8:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1376A>C
  hgvsp: ENSP00000385591.1:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1376A>C
  hgvsp: ENSP00000385867.2:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1376A>C
  hgvsp: ENSP00000372576.3:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103101A>C
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1376A>C
  hgvsp: ENSP00000463254.1:p.Asp459Ala
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp459Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

18-30846919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846919
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846919
    reference: chr 18
allele count: 1
allele frequency: 8.70958751393534e-6
allele num: 114816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1370A>G
  hgvsp: ENSP00000385234.1:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1370A>G
  hgvsp: ENSP00000463254.1:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1370A>G
  hgvsp: ENSP00000300227.8:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1370A>G
  hgvsp: ENSP00000385591.1:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103095A>G
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.11A>G
  hgvsp: ENSP00000462651.1:p.Glu4Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1370A>G
  hgvsp: ENSP00000385867.2:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1370A>G
  hgvsp: ENSP00000462370.1:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1370A>G
  hgvsp: ENSP00000372576.3:p.Glu457Gly
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu457Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

18-30846922-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846922
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846922
    reference: chr 18
allele count: 11
allele frequency: 9.576876197109525e-5
allele num: 114860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103092T>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1367T>A
  hgvsp: ENSP00000372576.3:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1367T>A
  hgvsp: ENSP00000300227.8:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1367T>A
  hgvsp: ENSP00000462370.1:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1367T>A
  hgvsp: ENSP00000463254.1:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.8T>A
  hgvsp: ENSP00000462651.1:p.Leu3His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1367T>A
  hgvsp: ENSP00000385867.2:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1367T>A
  hgvsp: ENSP00000385234.1:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1367T>A
  hgvsp: ENSP00000385591.1:p.Leu456His
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17977
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu456His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS

18-30846923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846923
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846923
    reference: chr 18
allele count: 1
allele frequency: 8.706554294072578e-6
allele num: 114856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1366C>T
  hgvsp: ENSP00000385234.1:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1366C>T
  hgvsp: ENSP00000463254.1:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1366C>T
  hgvsp: ENSP00000385867.2:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.7C>T
  hgvsp: ENSP00000462651.1:p.Leu3Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1366C>T
  hgvsp: ENSP00000462370.1:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1366C>T
  hgvsp: ENSP00000300227.8:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1366C>T
  hgvsp: ENSP00000372576.3:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1366C>T
  hgvsp: ENSP00000385591.1:p.Leu456Phe
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103091C>T
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6831
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu456Phe
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

18-30846923-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846923
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846922
    reference: chr 18
allele count: 1
allele frequency: 8.706554294072578e-6
allele num: 114856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462651
  ensembl transcript: ENST00000581524
  gene symbol: CCDC178
  hgvsc: ENST00000581524.1:c.6delA
  hgvsp: ENSP00000462651.1:p.Lys2AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1365delA
  hgvsp: ENSP00000385234.1:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1365delA
  hgvsp: ENSP00000463254.1:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1365delA
  hgvsp: ENSP00000300227.8:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1365delA
  hgvsp: ENSP00000385591.1:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1365delA
  hgvsp: ENSP00000372576.3:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1365delA
  hgvsp: ENSP00000385867.2:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1365delA
  hgvsp: ENSP00000462370.1:p.Lys455AsnfsTer9
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103090delA
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5140
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys455AsnfsTer9
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: GT
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

18-30846933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846933
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846933
    reference: chr 18
allele count: 1
allele frequency: 8.680555555555556e-6
allele num: 115200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1356C>T
  hgvsp: ENST00000383096.3:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103081C>T
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1356C>T
  hgvsp: ENST00000300227.8:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1356C>T
  hgvsp: ENST00000406524.2:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1356C>T
  hgvsp: ENST00000579947.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1356C>T
  hgvsp: ENST00000583930.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1356C>T
  hgvsp: ENST00000402325.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1356C>T
  hgvsp: ENST00000403303.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp452Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

18-30846939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846939
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846939
    reference: chr 18
allele count: 19
allele frequency: 1.644195988161789e-4
allele num: 115558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1350G>A
  hgvsp: ENST00000403303.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1350G>A
  hgvsp: ENST00000579947.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103075G>A
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1350G>A
  hgvsp: ENST00000300227.8:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1350G>A
  hgvsp: ENST00000406524.2:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1350G>A
  hgvsp: ENST00000383096.3:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1350G>A
  hgvsp: ENST00000583930.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1350G>A
  hgvsp: ENST00000402325.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21766
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14809
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Thr450Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

18-30846940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30846940
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 30846940
    reference: chr 18
allele count: 1
allele frequency: 8.644985044175873e-6
allele num: 115674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385234
  ensembl transcript: ENST00000402325
  gene symbol: CCDC178
  hgvsc: ENST00000402325.1:c.1349C>T
  hgvsp: ENSP00000385234.1:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462370
  ensembl transcript: ENST00000579947
  gene symbol: CCDC178
  hgvsc: ENST00000579947.1:c.1349C>T
  hgvsp: ENSP00000462370.1:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385591
  ensembl transcript: ENST00000403303
  gene symbol: CCDC178
  hgvsc: ENST00000403303.1:c.1349C>T
  hgvsp: ENSP00000385591.1:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000372576
  ensembl transcript: ENST00000383096
  gene symbol: CCDC178
  hgvsc: ENST00000383096.3:c.1349C>T
  hgvsp: ENSP00000372576.3:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000385867
  ensembl transcript: ENST00000406524
  gene symbol: CCDC178
  hgvsc: ENST00000406524.2:c.1349C>T
  hgvsp: ENSP00000385867.2:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000300227
  ensembl transcript: ENST00000300227
  gene symbol: CCDC178
  hgvsc: ENST00000300227.8:c.1349C>T
  hgvsp: ENSP00000300227.8:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000463254
  ensembl transcript: ENST00000583930
  gene symbol: CCDC178
  hgvsc: ENST00000583930.1:c.1349C>T
  hgvsp: ENSP00000463254.1:p.Thr450Met
  variant of: http://identifiers.org/hgnc/29588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166960
  ensembl protein: ENSP00000462153
  ensembl transcript: ENST00000579916
  gene symbol: CCDC178
  hgvsc: ENST00000579916.1:c.348+103074C>T
  variant of: http://identifiers.org/hgnc/29588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr450Met
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65532
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.821936110773715e-4
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.311e0

FS
type: SiteQuality
SIO_000300: 1.283e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.299e0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 4.219e1

DP
type: SiteQuality
SIO_000300: 1.457455e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52077376969402e-5
allele num: 65756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.461388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.301e1

QD
type: SiteQuality
SIO_000300: 1.418e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 4.644e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.349e0

GenotypeQuality
all individuals: 53598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515748628247491e-5
allele num: 65974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.697e1

FS
type: SiteQuality
SIO_000300: 7.964e0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.211e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.466412e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.003e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 4.881e1

DP
type: SiteQuality
SIO_000300: 1.47145e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.471674e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

QD
type: SiteQuality
SIO_000300: 1.41e1

VQSLOD
type: SiteQuality
SIO_000300: -9.897e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 4.59e-1

MQ
type: SiteQuality
SIO_000300: 5.311e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.035913686434284e-5
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 4.819e1

FS
type: SiteQuality
SIO_000300: 1.736e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.501e0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.403e0

DP
type: SiteQuality
SIO_000300: 1.471899e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.054143779803223e-5
allele num: 66268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

QD
type: SiteQuality
SIO_000300: 1.022e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 4.55e1

MQRankSum
type: SiteQuality
SIO_000300: -3.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

DP
type: SiteQuality
SIO_000300: 1.471777e6

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.932e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508978421608571e-5
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 4.817e1

QD
type: SiteQuality
SIO_000300: 3.98e0

DP
type: SiteQuality
SIO_000300: 1.470388e6

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.662e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.536e0

DP
type: SiteQuality
SIO_000300: 1.469688e6

QD
type: SiteQuality
SIO_000300: 1.224e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.930486593843098e-5
allele num: 10070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.469542e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.657e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele num: 904
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South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.578e1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.465585e6

BaseQRankSum
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SIO_000300: 4.13e0

ReadPosRankSum
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SIO_000300: 2.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 456

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 34
allele frequency: 2.941176470588235e-3
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.099780043991202e-3
allele num: 10002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 231
allele frequency: 3.490375026442235e-3
allele num: 66182
num of homozygotes: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 187
allele frequency: 1.13278410467652e-2
allele num: 16508
num of homozygotes: 4

MQ
type: SiteQuality
SIO_000300: 4.528e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.656e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
type: SiteQuality
SIO_000300: 1.484699e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 1.465663e6

VQSLOD
type: SiteQuality
SIO_000300: -2.17e0

FS
type: SiteQuality
SIO_000300: 9.842000000000001e0

MQ
type: SiteQuality
SIO_000300: 4.654e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512081531436175e-5
allele num: 66134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.087e1

MQRankSum
type: SiteQuality
SIO_000300: -1.436e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.378e0

DP
type: SiteQuality
SIO_000300: 1.465103e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.739e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

FS
type: SiteQuality
SIO_000300: 5.709e0

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66094
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 4.211e1

FS
type: SiteQuality
SIO_000300: 2.549e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.119e0

DP
type: SiteQuality
SIO_000300: 1.464388e6

VQSLOD
type: SiteQuality
SIO_000300: -2.577e0

QD
type: SiteQuality
SIO_000300: 1.025e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512950859356088e-5
allele num: 66096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 2.066e0

VQSLOD
type: SiteQuality
SIO_000300: -2.918e0

QD
type: SiteQuality
SIO_000300: 1.173e1

DP
type: SiteQuality
SIO_000300: 1.464502e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

MQ
type: SiteQuality
SIO_000300: 4.294e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 3404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 52742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025810160670519e-5
allele num: 66098
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.789e0

DP
type: SiteQuality
SIO_000300: 1.46451e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 1.605e1

MQ
type: SiteQuality
SIO_000300: 4.934e1

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 9.784000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
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GenotypeQuality
all individuals: 53100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
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GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.468827e6

MQ
type: SiteQuality
SIO_000300: 4.503e1

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53741
bin: 6.25e1
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GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

FS
type: SiteQuality
SIO_000300: 1.1886e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.64e0

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 4.274e1

DP
type: SiteQuality
SIO_000300: 1.477864e6

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
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GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.832841691248771e-5
allele num: 10170
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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SIO_000300: -5.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

South Asian
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
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MQ
type: SiteQuality
SIO_000300: 5.053e1

VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.502e1

ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 9.0e-4

VQSLOD
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QD
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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ReadPosRankSum
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VQSLOD
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FS
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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East Asian
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MQ
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.108103550046378e-5
allele num: 47436
num of homozygotes: 0

Latino
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.711647191858274e-5
allele num: 42448
num of homozygotes: 0

African
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.764263600176913e-5
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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DP
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.17e-2

QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 31058
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 2.862049227246708e-4
allele num: 3494
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Other
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allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 9736
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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DP
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.4e-2

BaseQRankSum
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SIO_000300: 2.23e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 3.275681341719078e-5
allele num: 30528
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African
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allele frequency: 4.533091568449683e-4
allele num: 6618
num of homozygotes: 0

European (Finnish)
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Latino
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VQSLOD
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DP
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QD
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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Other
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Other
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European (Finnish)
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FS
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MQ
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.022494887525562e-3
allele num: 2934
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 1.66197903349527e-3
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African
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allele frequency: 3.712871287128713e-3
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Other
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European (Finnish)
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South Asian
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MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.031e0

DP
type: SiteQuality
SIO_000300: 7.5482e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeQuality
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5543
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 793
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13942
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.356186395286556e-4
allele num: 7468
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.768033946251768e-4
allele num: 5656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 7.5482e5

FS
type: SiteQuality
SIO_000300: 1.031e0

QD
type: SiteQuality
SIO_000300: 1.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
all individuals: 874
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 674
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1154
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28010
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 885
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 9.75e1
variant carriers: 217

Other
type: Population
allele count: 2
allele frequency: 5.434782608695652e-3
allele num: 368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2962
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 3.800675675675676e-3
allele num: 2368
num of homozygotes: 0

African
type: Population
allele count: 203
allele frequency: 4.03739061256961e-2
allele num: 5028
num of homozygotes: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.919650828290844e-5
allele num: 20162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

QD
type: SiteQuality
SIO_000300: 1.599e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 6.84308e5

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19624
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.049484952534841e-5
allele num: 19804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.70276e5

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeQuality
all individuals: 22530
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
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variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24817
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variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
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variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.232142857142857e-4
allele num: 4480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17474
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

DP
type: SiteQuality
SIO_000300: 6.33094e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: -4.07e0

GenotypeQuality
all individuals: 1601
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28557
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 5.55889e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1746
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.4179e5

MQ
type: SiteQuality
SIO_000300: 5.395e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.27e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
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GenotypeQuality
all individuals: 592
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10403
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 4.331e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

DP
type: SiteQuality
SIO_000300: 4.85337e5

QD
type: SiteQuality
SIO_000300: 1.691e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3748
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.389830508474576e-4
allele num: 2950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.364e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.38e-2

DP
type: SiteQuality
SIO_000300: 4.65839e5

MQRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.783e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 2552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6610
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.172024326672459e-5
allele num: 46040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.220884e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
all individuals: 13514
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5430
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1021
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.979737783075089e-4
allele num: 6712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.86e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 4.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 1.233846e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5431
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2205
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GenotypeQuality
all individuals: 1798
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.158428663932657e-5
allele num: 46330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 1.243776e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 916
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 5445
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1015
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.425633995887594e-5
allele num: 46688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.370791844476055e-4
allele num: 8436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.476e0

FS
type: SiteQuality
SIO_000300: 1.6446e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.447e1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 1.278103e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

GenotypeQuality
all individuals: 1115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1032
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.395497569710924e-5
allele num: 46908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.355712603062426e-4
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

DP
type: SiteQuality
SIO_000300: 1.282043e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 1.4599e1

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

GenotypeQuality
all individuals: 1038
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 681
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 988
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 1104
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variant carriers: 1

GenotypeQuality
all individuals: 641
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variant carriers: 0

GenotypeQuality
all individuals: 629
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variant carriers: 0

GenotypeQuality
all individuals: 5897
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variant carriers: 0

GenotypeQuality
all individuals: 5536
bin: 9.75e1
variant carriers: 100

GenotypeQuality
all individuals: 12455
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GenotypeQuality
all individuals: 508
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variant carriers: 2

GenotypeQuality
all individuals: 2447
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1438
bin: 7.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.384333603100907e-3
allele num: 46954
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.881844380403458e-3
allele num: 694
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.338526596928556e-4
allele num: 8986
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 2.773037542662116e-3
allele num: 9376
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 7.06547338671691e-4
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.451846738004832e-4
allele num: 5794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 7.548e0

DP
type: SiteQuality
SIO_000300: 1.291198e6

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4955
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variant carriers: 0

GenotypeQuality
all individuals: 635
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variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2700
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variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5464
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1163
bin: 7.25e1
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GenotypeQuality
all individuals: 534
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GenotypeQuality
all individuals: 814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
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GenotypeQuality
all individuals: 3793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
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variant carriers: 0

GenotypeQuality
all individuals: 15723
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084462417142619e-5
allele num: 47974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.405e-1

FS
type: SiteQuality
SIO_000300: 4.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.34277e6

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.5e0
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GenotypeQuality
all individuals: 2700
bin: 3.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
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GenotypeQuality
all individuals: 15723
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 699
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GenotypeQuality
all individuals: 1531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6904
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.919992213354098e-4
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.33e0

DP
type: SiteQuality
SIO_000300: 1.34277e6

VQSLOD
type: SiteQuality
SIO_000300: -1.405e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

GenotypeQuality
all individuals: 5466
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 726
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
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GenotypeQuality
all individuals: 17498
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variant carriers: 0

GenotypeQuality
all individuals: 995
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GenotypeQuality
all individuals: 1221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 3.75e1
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GenotypeQuality
all individuals: 455
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GenotypeQuality
all individuals: 891
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.852691218130312e-5
allele num: 11296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.378911e6

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.045e1

GenotypeQuality
all individuals: 1127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.108647450110865e-4
allele num: 9020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 1.14e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

DP
type: SiteQuality
SIO_000300: 1.398613e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

GenotypeQuality
all individuals: 1054
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 7.5e0
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GenotypeQuality
all individuals: 2039
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.966955153422502e-5
allele num: 50840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12994
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.443414e6

QD
type: SiteQuality
SIO_000300: 9.5e0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.491e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
all individuals: 2884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5493
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 18053
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 1

Latino
type: Population
allele count: 2
allele frequency: 2.1654395842356e-4
allele num: 9236
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.336898395721925e-3
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.180173092053501e-4
allele num: 50840
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.395089285714286e-4
allele num: 7168
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.539171925504079e-4
allele num: 12994
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.443414e6

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

FS
type: SiteQuality
SIO_000300: 2.491e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeQuality
all individuals: 442
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5488
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
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variant carriers: 0

GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.380073800738008e-5
allele num: 13550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.468431e6

QD
type: SiteQuality
SIO_000300: 1.746e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3924
bin: 6.25e1
variant carriers: 3792

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 166

GenotypeQuality
all individuals: 1369
bin: 8.75e1
variant carriers: 1368

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 118

GenotypeQuality
all individuals: 2408
bin: 3.75e1
variant carriers: 2404

GenotypeQuality
all individuals: 2859
bin: 8.25e1
variant carriers: 2853

GenotypeQuality
all individuals: 1776
bin: 7.25e1
variant carriers: 1769

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 39

GenotypeQuality
all individuals: 24406
bin: 9.75e1
variant carriers: 24371

GenotypeQuality
all individuals: 702
bin: 2.75e1
variant carriers: 696

GenotypeQuality
all individuals: 1888
bin: 5.75e1
variant carriers: 1886

GenotypeQuality
all individuals: 1500
bin: 4.25e1
variant carriers: 1496

GenotypeQuality
all individuals: 1705
bin: 3.25e1
variant carriers: 1697

GenotypeQuality
all individuals: 3273
bin: 4.75e1
variant carriers: 3270

GenotypeQuality
all individuals: 2347
bin: 9.25e1
variant carriers: 2340

GenotypeQuality
all individuals: 3168
bin: 7.75e1
variant carriers: 3157

European (Finnish)
type: Population
allele count: 6099
allele frequency: 9.397534668721109e-1
allele num: 6490
num of homozygotes: 2862

African
type: Population
allele count: 8708
allele frequency: 8.574241827491138e-1
allele num: 10156
num of homozygotes: 3726

European (Non-Finnish)
type: Population
allele count: 58866
allele frequency: 9.317778903381031e-1
allele num: 63176
num of homozygotes: 27415

Latino
type: Population
allele count: 10553
allele frequency: 9.572750362844702e-1
allele num: 11024
num of homozygotes: 5052

South Asian
type: Population
allele count: 15820
allele frequency: 9.798092406788059e-1
allele num: 16146
num of homozygotes: 7749

East Asian
type: Population
allele count: 8367
allele frequency: 9.998804971319312e-1
allele num: 8368
num of homozygotes: 4183

Other
type: Population
allele count: 811
allele frequency: 9.408352668213457e-1
allele num: 862
num of homozygotes: 382

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.09e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

QD
type: SiteQuality
SIO_000300: 3.167e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

FS
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 2.180214e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6838
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.827497425334706e-5
allele num: 62144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
SIO_000300: 1.806e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.301e-1

FS
type: SiteQuality
SIO_000300: 3.616e0

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.617545e6

GenotypeQuality
all individuals: 5114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6838
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 761
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
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GenotypeQuality
all individuals: 3880
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variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 5.25e1
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GenotypeQuality
all individuals: 1539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
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GenotypeQuality
all individuals: 2102
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variant carriers: 0

GenotypeQuality
all individuals: 22283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.82439212659205e-5
allele num: 62184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.483e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.62165e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 1644
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6835
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.959333465582226e-4
allele num: 10082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.624714e6

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.607355257659048e-5
allele num: 62214
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.624714e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10092
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.607458607940846e-5
allele num: 62210
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: -1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.2707e1

DP
type: SiteQuality
SIO_000300: 1.637349e6

VQSLOD
type: SiteQuality
SIO_000300: -2.689e0

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62224
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.145783793671118e-5
allele num: 10934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.235191420376606e-4
allele num: 16038
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.24e-1

DP
type: SiteQuality
SIO_000300: 1.644804e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.607717041800643e-5
allele num: 62200
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.901e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.646292e6

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.607717041800643e-5
allele num: 62200
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10094
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East Asian
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 10104
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 62448
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Other
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MQ
type: SiteQuality
SIO_000300: 5.89e1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.219679064560268e-5
allele num: 16078
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 17
allele frequency: 2.71080494961092e-4
allele num: 62712
num of homozygotes: 0

Latino
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allele num: 10974
num of homozygotes: 0

East Asian
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allele frequency: 1.201634222542658e-4
allele num: 8322
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Other
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allele num: 868
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6484
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
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